Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history.

Abstract:

:A central paradigm in conservation biology is that population bottlenecks reduce genetic diversity and population viability. In an era of biodiversity loss and climate change, understanding the determinants and consequences of bottlenecks is therefore an important challenge. However, as most studies focus on single species, the multitude of potential drivers and the consequences of bottlenecks remain elusive. Here, we combined genetic data from over 11,000 individuals of 30 pinniped species with demographic, ecological and life history data to evaluate the consequences of commercial exploitation by 18th and 19th century sealers. We show that around one third of these species exhibit strong signatures of recent population declines. Bottleneck strength is associated with breeding habitat and mating system variation, and together with global abundance explains much of the variation in genetic diversity across species. Overall, bottleneck intensity is unrelated to IUCN status, although the three most heavily bottlenecked species are endangered. Our study reveals an unforeseen interplay between human exploitation, animal biology, demographic declines and genetic diversity.

journal_name

Nat Commun

journal_title

Nature communications

authors

Stoffel MA,Humble E,Paijmans AJ,Acevedo-Whitehouse K,Chilvers BL,Dickerson B,Galimberti F,Gemmell NJ,Goldsworthy SD,Nichols HJ,Krüger O,Negro S,Osborne A,Pastor T,Robertson BC,Sanvito S,Schultz JK,Shafer ABA,Wolf JBW

doi

10.1038/s41467-018-06695-z

subject

Has Abstract

pub_date

2018-11-16 00:00:00

pages

4836

issue

1

issn

2041-1723

pii

10.1038/s41467-018-06695-z

journal_volume

9

pub_type

历史文章,杂志文章
  • Voltage tunability of single-spin states in a quantum dot.

    abstract::Single spins in the solid state offer a unique opportunity to store and manipulate quantum information, and to perform quantum-enhanced sensing of local fields and charges. Optical control of these systems using techniques developed in atomic physics has yet to exploit all the advantages of the solid state. Here we de...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2519

    authors: Bennett AJ,Pooley MA,Cao Y,Sköld N,Farrer I,Ritchie DA,Shields AJ

    更新日期:2013-01-01 00:00:00

  • Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes.

    abstract::Viruses provide top-down control on microbial communities, yet their direct study in natural environments was hindered by culture limitations. The advance of bioinformatics enables cultivation-independent study of viruses. Many studies assemble new viral genomes and study viral diversity using marker genes from free v...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09106-z

    authors: Sieradzki ET,Ignacio-Espinoza JC,Needham DM,Fichot EB,Fuhrman JA

    更新日期:2019-03-12 00:00:00

  • Macrophages are exploited from an innate wound healing response to facilitate cancer metastasis.

    abstract::Tumour-associated macrophages (TAMs) play an important role in tumour progression, which is facilitated by their ability to respond to environmental cues. Here we report, using murine models of breast cancer, that TAMs expressing fibroblast activation protein alpha (FAP) and haem oxygenase-1 (HO-1), which are also fou...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05346-7

    authors: Muliaditan T,Caron J,Okesola M,Opzoomer JW,Kosti P,Georgouli M,Gordon P,Lall S,Kuzeva DM,Pedro L,Shields JD,Gillett CE,Diebold SS,Sanz-Moreno V,Ng T,Hoste E,Arnold JN

    更新日期:2018-07-27 00:00:00

  • Imaging local electronic corrugations and doped regions in graphene.

    abstract::Electronic structure heterogeneities are ubiquitous in two-dimensional graphene and profoundly impact the transport properties of this material. Here we show the mapping of discrete electronic domains within a single graphene sheet using scanning transmission X-ray microscopy in conjunction with ab initio density func...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1376

    authors: Schultz BJ,Patridge CJ,Lee V,Jaye C,Lysaght PS,Smith C,Barnett J,Fischer DA,Prendergast D,Banerjee S

    更新日期:2011-06-28 00:00:00

  • Small RNA zippers lock miRNA molecules and block miRNA function in mammalian cells.

    abstract::MicroRNAs (miRNAs) loss-of-function phenotypes are mainly induced by chemically modified antisense oligonucleotides. Here we develop an alternative inhibitor for miRNAs, termed 'small RNA zipper'. It is designed to connect miRNA molecules end to end, forming a DNA-RNA duplex through a complementary interaction with hi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13964

    authors: Meng L,Liu C,Lü J,Zhao Q,Deng S,Wang G,Qiao J,Zhang C,Zhen L,Lu Y,Li W,Zhang Y,Pestell RG,Fan H,Chen YH,Liu Z,Yu Z

    更新日期:2017-01-03 00:00:00

  • Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway.

    abstract::Pupylation is a posttranslational protein modification occurring in mycobacteria and other actinobacteria that is functionally analogous to ubiquitination. Here we report the crystal structures of the modification enzymes involved in this pathway, the prokaryotic ubiquitin-like protein (Pup) ligase PafA and the depupy...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2009

    authors: Özcelik D,Barandun J,Schmitz N,Sutter M,Guth E,Damberger FF,Allain FH,Ban N,Weber-Ban E

    更新日期:2012-01-01 00:00:00

  • Photosynthesis-dependent H2O2 transfer from chloroplasts to nuclei provides a high-light signalling mechanism.

    abstract::Chloroplasts communicate information by signalling to nuclei during acclimation to fluctuating light. Several potential operating signals originating from chloroplasts have been proposed, but none have been shown to move to nuclei to modulate gene expression. One proposed signal is hydrogen peroxide (H2O2) produced by...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00074-w

    authors: Exposito-Rodriguez M,Laissue PP,Yvon-Durocher G,Smirnoff N,Mullineaux PM

    更新日期:2017-06-29 00:00:00

  • MCM8IP activates the MCM8-9 helicase to promote DNA synthesis and homologous recombination upon DNA damage.

    abstract::Homologous recombination (HR) mediates the error-free repair of DNA double-strand breaks to maintain genomic stability. Here we characterize C17orf53/MCM8IP, an OB-fold containing protein that binds ssDNA, as a DNA repair factor involved in HR. MCM8IP-deficient cells exhibit HR defects, especially in long-tract gene c...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16718-3

    authors: Huang JW,Acharya A,Taglialatela A,Nambiar TS,Cuella-Martin R,Leuzzi G,Hayward SB,Joseph SA,Brunette GJ,Anand R,Soni RK,Clark NL,Bernstein KA,Cejka P,Ciccia A

    更新日期:2020-06-11 00:00:00

  • Senescent tumor cells lead the collective invasion in thyroid cancer.

    abstract::Cellular senescence has been perceived as a barrier against carcinogenesis. However, the senescence-associated secretory phenotype (SASP) of senescent cells can promote tumorigenesis. Here, we show senescent tumour cells are frequently present in the front region of collective invasion of papillary thyroid carcinoma (...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15208

    authors: Kim YH,Choi YW,Lee J,Soh EY,Kim JH,Park TJ

    更新日期:2017-05-10 00:00:00

  • Crystalline TiO2 protective layer with graded oxygen defects for efficient and stable silicon-based photocathode.

    abstract::The trade-offs between photoelectrode efficiency and stability significantly hinder the practical application of silicon-based photoelectrochemical devices. Here, we report a facile approach to decouple the trade-offs of silicon-based photocathodes by employing crystalline TiO2 with graded oxygen defects as protection...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05580-z

    authors: Zheng J,Lyu Y,Wang R,Xie C,Zhou H,Jiang SP,Wang S

    更新日期:2018-09-03 00:00:00

  • Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons.

    abstract::In the Drosophila antenna, different subtypes of olfactory receptor neurons (ORNs) housed in the same sensory hair (sensillum) can inhibit each other non-synaptically. However, the mechanisms underlying this underexplored form of lateral inhibition remain unclear. Here we use recordings from pairs of sensilla impaled ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09346-z

    authors: Zhang Y,Tsang TK,Bushong EA,Chu LA,Chiang AS,Ellisman MH,Reingruber J,Su CY

    更新日期:2019-04-05 00:00:00

  • Promoted cobalt metal catalysts suitable for the production of lower olefins from natural gas.

    abstract::Due to the surge of natural gas production, feedstocks for chemicals shift towards lighter hydrocarbons, particularly methane. The success of a Gas-to-Chemicals process via synthesis gas (CO and H2) depends on the ability of catalysts to suppress methane and carbon dioxide formation. We designed a Co/Mn/Na/S catalyst,...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08019-7

    authors: Xie J,Paalanen PP,van Deelen TW,Weckhuysen BM,Louwerse MJ,de Jong KP

    更新日期:2019-01-11 00:00:00

  • Dynamics of soliton self-injection locking in optical microresonators.

    abstract::Soliton microcombs constitute chip-scale optical frequency combs, and have the potential to impact a myriad of applications from frequency synthesis and telecommunications to astronomy. The demonstration of soliton formation via self-injection locking of the pump laser to the microresonator has significantly relaxed t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20196-y

    authors: Voloshin AS,Kondratiev NM,Lihachev GV,Liu J,Lobanov VE,Dmitriev NY,Weng W,Kippenberg TJ,Bilenko IA

    更新日期:2021-01-11 00:00:00

  • Societal decisions about climate mitigation will have dramatic impacts on eutrophication in the 21st century.

    abstract::Excessive nitrogen runoff leads to degraded water quality, harming human and ecosystem health. We examine the impact of changes in land use and land management for six combinations of socioeconomic pathways and climate outcomes, and find that societal choices will substantially impact riverine total nitrogen loading (...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08884-w

    authors: Sinha E,Michalak AM,Calvin KV,Lawrence PJ

    更新日期:2019-02-26 00:00:00

  • Direct binding of CEP85 to STIL ensures robust PLK4 activation and efficient centriole assembly.

    abstract::Centrosomes are required for faithful chromosome segregation during mitosis. They are composed of a centriole pair that recruits and organizes the microtubule-nucleating pericentriolar material. Centriole duplication is tightly controlled in vivo and aberrations in this process are associated with several human diseas...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04122-x

    authors: Liu Y,Gupta GD,Barnabas DD,Agircan FG,Mehmood S,Wu D,Coyaud E,Johnson CM,McLaughlin SH,Andreeva A,Freund SMV,Robinson CV,Cheung SWT,Raught B,Pelletier L,van Breugel M

    更新日期:2018-04-30 00:00:00

  • Motional Fock states for quantum-enhanced amplitude and phase measurements with trapped ions.

    abstract::The quantum noise of the vacuum limits the achievable sensitivity of quantum sensors. In non-classical measurement schemes the noise can be reduced to overcome this limitation. However, schemes based on squeezed or Schrödinger cat states require alignment of the relative phase between the measured interaction and the ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10576-4

    authors: Wolf F,Shi C,Heip JC,Gessner M,Pezzè L,Smerzi A,Schulte M,Hammerer K,Schmidt PO

    更新日期:2019-07-02 00:00:00

  • Observational evidence for cloud cover enhancement over western European forests.

    abstract::Forests impact regional hydrology and climate directly by regulating water and heat fluxes. Indirect effects through cloud formation and precipitation can be important in facilitating continental-scale moisture recycling but are poorly understood at regional scales. In particular, the impact of temperate forest on clo...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14065

    authors: Teuling AJ,Taylor CM,Meirink JF,Melsen LA,Miralles DG,van Heerwaarden CC,Vautard R,Stegehuis AI,Nabuurs GJ,de Arellano JV

    更新日期:2017-01-11 00:00:00

  • A fluoroxalate cathode material for potassium-ion batteries with ultra-long cyclability.

    abstract::Potassium-ion batteries are a compelling technology for large scale energy storage due to their low-cost and good rate performance. However, the development of potassium-ion batteries remains in its infancy, mainly hindered by the lack of suitable cathode materials. Here we show that a previously known frustrated magn...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15044-y

    authors: Ji B,Yao W,Zheng Y,Kidkhunthod P,Zhou X,Tunmee S,Sattayaporn S,Cheng HM,He H,Tang Y

    更新日期:2020-03-06 00:00:00

  • A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts.

    abstract::Biocatalytic cyclization is highly desirable for efficient synthesis of biologically derived chemical substances, such as the commodity chemicals ε-caprolactam and δ-valerolactam. To identify biocatalysts in lactam biosynthesis, we develop a caprolactam-detecting genetic enzyme screening system (CL-GESS). The Alcalige...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07488-0

    authors: Yeom SJ,Kim M,Kwon KK,Fu Y,Rha E,Park SH,Lee H,Kim H,Lee DH,Kim DM,Lee SG

    更新日期:2018-11-29 00:00:00

  • Single cell transcriptomics of human epidermis identifies basal stem cell transition states.

    abstract::How stem cells give rise to epidermis is unclear despite the crucial role the epidermis plays in barrier and appendage formation. Here we use single cell-RNA sequencing to interrogate basal stem cell heterogeneity of human interfollicular epidermis and find four spatially distinct stem cell populations at the top and ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18075-7

    authors: Wang S,Drummond ML,Guerrero-Juarez CF,Tarapore E,MacLean AL,Stabell AR,Wu SC,Gutierrez G,That BT,Benavente CA,Nie Q,Atwood SX

    更新日期:2020-08-25 00:00:00

  • MyD88 promotes myoblast fusion in a cell-autonomous manner.

    abstract::Myoblast fusion is an indispensable step for skeletal muscle development, postnatal growth, and regeneration. Myeloid differentiation primary response gene 88 (MyD88) is an adaptor protein that mediates Toll-like receptors and interleukin-1 receptor signaling. Here we report a cell-autonomous role of MyD88 in the regu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01866-w

    authors: Hindi SM,Shin J,Gallot YS,Straughn AR,Simionescu-Bankston A,Hindi L,Xiong G,Friedland RP,Kumar A

    更新日期:2017-11-20 00:00:00

  • Active and dynamic mitochondrial S-depalmitoylation revealed by targeted fluorescent probes.

    abstract::The reversible modification of cysteine residues by thioester formation with palmitate (S-palmitoylation) is an abundant lipid post-translational modification (PTM) in mammalian systems. S-palmitoylation has been observed on mitochondrial proteins, providing an intriguing potential connection between metabolic lipids ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02655-1

    authors: Kathayat RS,Cao Y,Elvira PD,Sandoz PA,Zaballa ME,Springer MZ,Drake LE,Macleod KF,van der Goot FG,Dickinson BC

    更新日期:2018-01-23 00:00:00

  • The higher order auditory cortex is involved in the assignment of affective value to sensory stimuli.

    abstract::The sensory cortex participates in emotional memory but its role is poorly understood. Here we show that inactivation of the higher order auditory cortex Te2 in rats during early memory consolidation impairs remote first- and second-order fear memories but not the association between two neutral cues. Furthermore, Te2...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9886

    authors: Grosso A,Cambiaghi M,Renna A,Milano L,Roberto Merlo G,Sacco T,Sacchetti B

    更新日期:2015-12-01 00:00:00

  • Hepatic Ago2-mediated RNA silencing controls energy metabolism linked to AMPK activation and obesity-associated pathophysiology.

    abstract::RNA silencing inhibits mRNA translation. While mRNA translation accounts for the majority of cellular energy expenditure, it is unclear if RNA silencing regulates energy homeostasis. Here, we report that hepatic Argonaute 2 (Ago2)-mediated RNA silencing regulates both intrinsic energy production and consumption and di...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05870-6

    authors: Zhang C,Seo J,Murakami K,Salem ESB,Bernhard E,Borra VJ,Choi K,Yuan CL,Chan CC,Chen X,Huang T,Weirauch MT,Divanovic S,Qi NR,Thomas HE,Mercer CA,Siomi H,Nakamura T

    更新日期:2018-09-10 00:00:00

  • Phototrophic purple bacteria as optoacoustic in vivo reporters of macrophage activity.

    abstract::Τhe morphology, physiology and immunology, of solid tumors exhibit spatial heterogeneity which complicates our understanding of cancer progression and therapy response. Understanding spatial heterogeneity necessitates high resolution in vivo imaging of anatomical and pathophysiological tumor information. We introduce ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09081-5

    authors: Peters L,Weidenfeld I,Klemm U,Loeschcke A,Weihmann R,Jaeger KE,Drepper T,Ntziachristos V,Stiel AC

    更新日期:2019-03-13 00:00:00

  • Crystal structure of a lipin/Pah phosphatidic acid phosphatase.

    abstract::Lipin/Pah phosphatidic acid phosphatases (PAPs) generate diacylglycerol to regulate triglyceride synthesis and cellular signaling. Inactivating mutations cause rhabdomyolysis, autoinflammatory disease, and aberrant fat storage. Disease-mutations cluster within the conserved N-Lip and C-Lip regions that are separated b...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15124-z

    authors: Khayyo VI,Hoffmann RM,Wang H,Bell JA,Burke JE,Reue K,Airola MV

    更新日期:2020-03-11 00:00:00

  • Ultrathin rhodium nanosheets.

    abstract::Despite significant advances in the fabrication and applications of graphene-like materials, it remains a challenge to prepare single-layered metallic materials, which have great potential applications in physics, chemistry and material science. Here we report the fabrication of poly(vinylpyrrolidone)-supported single...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4093

    authors: Duan H,Yan N,Yu R,Chang CR,Zhou G,Hu HS,Rong H,Niu Z,Mao J,Asakura H,Tanaka T,Dyson PJ,Li J,Li Y

    更新日期:2014-01-01 00:00:00

  • Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers.

    abstract::Non-pial neocortical astrocytes have historically been thought to comprise largely a nondiverse population of protoplasmic astrocytes. Here we show that astrocytes of the mouse somatosensory cortex manifest layer-specific morphological and molecular differences. Two- and three-dimensional observations revealed that as...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03940-3

    authors: Lanjakornsiripan D,Pior BJ,Kawaguchi D,Furutachi S,Tahara T,Katsuyama Y,Suzuki Y,Fukazawa Y,Gotoh Y

    更新日期:2018-04-24 00:00:00

  • Disinhibition of olfactory bulb granule cells accelerates odour discrimination in mice.

    abstract::Granule cells are the dominant cell type of the olfactory bulb inhibiting mitral and tufted cells via dendrodendritic synapses; yet the factors regulating the strength of their inhibitory output, and, therefore, their impact on odour discrimination, remain unknown. Here we show that GABAAR β3-subunits are distributed ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9950

    authors: Nunes D,Kuner T

    更新日期:2015-11-23 00:00:00

  • Nonequilibrium self-assembly dynamics of icosahedral viral capsids packaging genome or polyelectrolyte.

    abstract::The survival of viruses partly relies on their ability to self-assemble inside host cells. Although coarse-grained simulations have identified different pathways leading to assembled virions from their components, experimental evidence is severely lacking. Here, we use time-resolved small-angle X-ray scattering to unc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05426-8

    authors: Chevreuil M,Law-Hine D,Chen J,Bressanelli S,Combet S,Constantin D,Degrouard J,Möller J,Zeghal M,Tresset G

    更新日期:2018-08-06 00:00:00