当前位置： SCI文献检索 > Nature Communications期刊下所有文献 > Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes.

Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes.

Abstract：

:Viruses provide top-down control on microbial communities, yet their direct study in natural environments was hindered by culture limitations. The advance of bioinformatics enables cultivation-independent study of viruses. Many studies assemble new viral genomes and study viral diversity using marker genes from free viruses. Here we use cellular metatranscriptomics to study active community-wide viral infections. Recruitment to viral contigs allows tracking infection dynamics over time and space. Our assemblies represent viral populations, but appear biased towards low diversity viral taxa. Tracking relatives of published T4-like cyanophages and pelagiphages reveals high genomic continuity. We determine potential hosts by matching dynamics of infection with abundance of particular microbial taxa. Finally, we quantify the relative contribution of cyanobacteria and viruses to photosystem-II psbA (reaction center) expression in our study sites. We show sometimes >50% of all cyanobacterial+viral psbA expression is of viral origin, highlighting the contribution of viruses to photosynthesis and oxygen production.

journal_name

Nat Commun

journal_title

Nature communications

authors

Sieradzki ET,Ignacio-Espinoza JC,Needham DM,Fichot EB,Fuhrman JA

doi

10.1038/s41467-019-09106-z

subject

Has Abstract

pub_date

2019-03-12 00:00:00

pages

1169

issue

1

issn

2041-1723

pii

10.1038/s41467-019-09106-z

journal_volume

10

pub_type

杂志文章

相关文献

Nature Communications文献大全
  • Isotope analysis in the transmission electron microscope.

    abstract：:The Ångström-sized probe of the scanning transmission electron microscope can visualize and collect spectra from single atoms. This can unambiguously resolve the chemical structure of materials, but not their isotopic composition. Here we differentiate between two isotopes of the same element by quantifying how likely...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms13040

    authors： Susi T,Hofer C,Argentero G,Leuthner GT,Pennycook TJ,Mangler C,Meyer JC,Kotakoski J

    更新日期：2016-10-10 00:00:00

  • STAT3 serine phosphorylation is required for TLR4 metabolic reprogramming and IL-1β expression.

    abstract：:Detection of microbial components such as lipopolysaccharide (LPS) by Toll-like receptor 4 (TLR4) on macrophages induces a robust pro-inflammatory response that is dependent on metabolic reprogramming. These innate metabolic changes have been compared to aerobic glycolysis in tumour cells. However, the mechanisms by w...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-020-17669-5

    authors： Balic JJ,Albargy H,Luu K,Kirby FJ,Jayasekara WSN,Mansell F,Garama DJ,De Nardo D,Baschuk N,Louis C,Humphries F,Fitzgerald K,Latz E,Gough DJ,Mansell A

    更新日期：2020-07-30 00:00:00

  • Sensory overamplification in layer 5 auditory corticofugal projection neurons following cochlear nerve synaptic damage.

    abstract：:Layer 5 (L5) cortical projection neurons innervate far-ranging brain areas to coordinate integrative sensory processing and adaptive behaviors. Here, we characterize a plasticity in L5 auditory cortex (ACtx) neurons that innervate the inferior colliculus (IC), thalamus, lateral amygdala and striatum. We track daily ch...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-018-04852-y

    authors： Asokan MM,Williamson RS,Hancock KE,Polley DB

    更新日期：2018-06-25 00:00:00

  • European land CO2 sink influenced by NAO and East-Atlantic Pattern coupling.

    abstract：:Large-scale climate patterns control variability in the global carbon sink. In Europe, the North-Atlantic Oscillation (NAO) influences vegetation activity, however the East-Atlantic (EA) pattern is known to modulate NAO strength and location. Using observation-driven and modelled data sets, we show that multi-annual v...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms10315

    authors： Bastos A,Janssens IA,Gouveia CM,Trigo RM,Ciais P,Chevallier F,Peñuelas J,Rödenbeck C,Piao S,Friedlingstein P,Running SW

    更新日期：2016-01-18 00:00:00

  • Ammonia as a case study for the spontaneous ionization of a simple hydrogen-bonded compound.

    abstract：:Modern ab initio calculations predict ionic and superionic states in highly compressed water and ammonia. The prediction apparently contradicts state-of-the-art experimentally established phase diagrams overwhelmingly dominated by molecular phases. Here we present experimental evidence that the threshold pressure of ~...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms4460

    authors： Palasyuk T,Troyan I,Eremets M,Drozd V,Medvedev S,Zaleski-Ejgierd P,Magos-Palasyuk E,Wang H,Bonev SA,Dudenko D,Naumov P

    更新日期：2014-03-24 00:00:00

  • A novel thiol-reductase activity of Arabidopsis YUC6 confers drought tolerance independently of auxin biosynthesis.

    abstract：:YUCCA (YUC) proteins constitute a family of flavin monooxygenases (FMOs), with an important role in auxin (IAA) biosynthesis. Here we report that Arabidopsis plants overexpressing YUC6 display enhanced IAA-related phenotypes and exhibit improved drought stress tolerance, low rate of water loss and controlled ROS accum...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms9041

    authors： Cha JY,Kim WY,Kang SB,Kim JI,Baek D,Jung IJ,Kim MR,Li N,Kim HJ,Nakajima M,Asami T,Sabir JS,Park HC,Lee SY,Bohnert HJ,Bressan RA,Pardo JM,Yun DJ

    更新日期：2015-08-28 00:00:00

  • Mutualism supports biodiversity when the direct competition is weak.

    abstract：:A key question of theoretical ecology is which properties of ecosystems favour their stability and help maintaining biodiversity. This question recently reconsidered mutualistic systems, generating intense controversy about the role of mutualistic interactions and their network architecture. Here we show analytically ...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms14326

    authors： Pascual-García A,Bastolla U

    更新日期：2017-02-24 00:00:00

  • Experimental observation of anomalous topological edge modes in a slowly driven photonic lattice.

    abstract：:Topological quantum matter can be realized by subjecting engineered systems to time-periodic modulations. In analogy with static systems, periodically driven quantum matter can be topologically classified by topological invariants, whose non-zero value guarantees the presence of robust edge modes. In the high-frequenc...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms13918

    authors： Mukherjee S,Spracklen A,Valiente M,Andersson E,Öhberg P,Goldman N,Thomson RR

    更新日期：2017-01-04 00:00:00

  • Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis.

    abstract：:Bacteria release membrane vesicles (MVs) that play important roles in various biological processes. However, the mechanisms of MV formation in Gram-positive bacteria are unclear, as these cells possess a single cytoplasmic membrane that is surrounded by a thick cell wall. Here we use live cell imaging and electron cry...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-017-00492-w

    authors： Toyofuku M,Cárcamo-Oyarce G,Yamamoto T,Eisenstein F,Hsiao CC,Kurosawa M,Gademann K,Pilhofer M,Nomura N,Eberl L

    更新日期：2017-09-07 00:00:00

  • Identification of recurrent FHL2-GLI2 oncogenic fusion in sclerosing stromal tumors of the ovary.

    abstract：:Sclerosing stromal tumor (SST) of the ovary is a rare type of sex cord-stromal tumor (SCST), whose genetic underpinning is currently unknown. Here, using whole-exome, targeted capture and RNA-sequencing, we report recurrent FHL2-GLI2 fusion genes in 65% (17/26) of SSTs and other GLI2 rearrangements in additional 15% (...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-019-13806-x

    authors： Kim SH,Da Cruz Paula A,Basili T,Dopeso H,Bi R,Pareja F,da Silva EM,Gularte-Mérida R,Sun Z,Fujisawa S,Smith CG,Ferrando L,Martins Sebastião AP,Bykov Y,Li A,Silveira C,Ashley CW,Stylianou A,Selenica P,Samore WR,Jung

    更新日期：2020-01-02 00:00:00

  • Multiple novel gene-by-environment interactions modify the effect of FTO variants on body mass index.

    abstract：:Genetic studies have shown that obesity risk is heritable and that, of the many common variants now associated with body mass index, those in an intron of the fat mass and obesity-associated (FTO) gene have the largest effect. The size of the UK Biobank, and its joint measurement of genetic, anthropometric and lifesty...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms12724

    authors： Young AI,Wauthier F,Donnelly P

    更新日期：2016-09-06 00:00:00

  • Two sequential cleavage reactions on cruciform DNA structures cause palindrome-mediated chromosomal translocations.

    abstract：:Gross chromosomal rearrangements (GCRs), such as translocations, deletions or inversions, are often generated by illegitimate repair between two DNA breakages at regions with nucleotide sequences that might potentially adopt a non-B DNA conformation. We previously established a plasmid-based model system that recapitu...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms2595

    authors： Inagaki H,Ohye T,Kogo H,Tsutsumi M,Kato T,Tong M,Emanuel BS,Kurahashi H

    更新日期：2013-01-01 00:00:00

  • GWAS for Interleukin-1β levels in gingival crevicular fluid identifies IL37 variants in periodontal inflammation.

    abstract：:There is no agnostic GWAS evidence for the genetic control of IL-1β expression in periodontal disease. Here we report a GWAS for "high" gingival crevicular fluid IL-1β expression among 4910 European-American adults and identify association signals in the IL37 locus. rs3811046 at this locus (p = 3.3 × 10-22) is associa...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-018-05940-9

    authors： Offenbacher S,Jiao Y,Kim SJ,Marchesan J,Moss KL,Jing L,Divaris K,Bencharit S,Agler CS,Morelli T,Zhang S,Sun L,Seaman WT,Cowley D,Barros SP,Beck JD,Munz M,Schaefer AS,North KE

    更新日期：2018-09-11 00:00:00

  • Integrated genetic and epigenetic analysis of myxofibrosarcoma.

    abstract：:Myxofibrosarcoma (MFS) is a common adult soft tissue sarcoma characterized by an infiltrative growth pattern and a high local recurrence rate. Here we report the genetic and epigenetic landscape of MFS based on the results of whole-exome sequencing (N = 41), RNA sequencing (N = 29), and methylation analysis (N = 41), ...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-018-03891-9

    authors： Ogura K,Hosoda F,Arai Y,Nakamura H,Hama N,Totoki Y,Yoshida A,Nagai M,Kato M,Arakawa E,Mukai W,Rokutan H,Kawai A,Tanaka S,Shibata T

    更新日期：2018-07-17 00:00:00

  • Spiracular air breathing in polypterid fishes and its implications for aerial respiration in stem tetrapods.

    abstract：:The polypterids (bichirs and ropefish) are extant basal actinopterygian (ray-finned) fishes that breathe air and share similarities with extant lobe-finned sarcopterygians (lungfishes and tetrapods) in lung structure. They are also similar to some fossil sarcopterygians, including stem tetrapods, in having large paire...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms4022

    authors： Graham JB,Wegner NC,Miller LA,Jew CJ,Lai NC,Berquist RM,Frank LR,Long JA

    更新日期：2014-01-01 00:00:00

  • Thermotropic phase boundaries in classic ferroelectrics.

    abstract：:High-performance piezoelectrics are lead-based solid solutions that exhibit a so-called morphotropic phase boundary, which separates two competing phases as a function of chemical composition; as a consequence, an intermediate low-symmetry phase with a strong piezoelectric effect arises. In search for environmentally ...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms4172

    authors： Lummen TT,Gu Y,Wang J,Lei S,Xue F,Kumar A,Barnes AT,Barnes E,Denev S,Belianinov A,Holt M,Morozovska AN,Kalinin SV,Chen LQ,Gopalan V

    更新日期：2014-01-01 00:00:00

  • A neural circuit model of decision uncertainty and change-of-mind.

    abstract：:Decision-making is often accompanied by a degree of confidence on whether a choice is correct. Decision uncertainty, or lack in confidence, may lead to change-of-mind. Studies have identified the behavioural characteristics associated with decision confidence or change-of-mind, and their neural correlates. Although se...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-019-10316-8

    authors： Atiya NAA,Rañó I,Prasad G,Wong-Lin K

    更新日期：2019-05-23 00:00:00

  • X-ray structure of a carpet-like antimicrobial defensin-phospholipid membrane disruption complex.

    abstract：:Defensins are cationic antimicrobial peptides expressed throughout the plant and animal kingdoms as a first line of defense against pathogens. Membrane targeting and disruption is a crucial function of many defensins, however the precise mechanism remains unclear. Certain plant defensins form dimers that specifically ...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-018-04434-y

    authors： Järvå M,Lay FT,Phan TK,Humble C,Poon IKH,Bleackley MR,Anderson MA,Hulett MD,Kvansakul M

    更新日期：2018-05-17 00:00:00

  • Hybrid multiphoton volumetric functional imaging of large-scale bioengineered neuronal networks.

    abstract：:Planar neural networks and interfaces serve as versatile in vitro models of central nervous system physiology, but adaptations of related methods to three dimensions (3D) have met with limited success. Here, we demonstrate for the first time volumetric functional imaging in a bioengineered neural tissue growing in a t...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms4997

    authors： Dana H,Marom A,Paluch S,Dvorkin R,Brosh I,Shoham S

    更新日期：2014-06-05 00:00:00

  • Towards fully integrated photonic displacement sensors.

    abstract：:The field of optical metrology with its high precision position, rotation and wavefront sensors represents the basis for lithography and high resolution microscopy. However, the on-chip integration-a task highly relevant for future nanotechnological devices-necessitates the reduction of the spatial footprint of sensin...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-020-16739-y

    authors： Bag A,Neugebauer M,Mick U,Christiansen S,Schulz SA,Banzer P

    更新日期：2020-06-09 00:00:00

  • Chemically induced Jahn-Teller ordering on manganite surfaces.

    abstract：:Physical and electrochemical phenomena at the surfaces of transition metal oxides and their coupling to local functionality remains one of the enigmas of condensed matter physics. Understanding the emergent physical phenomena at surfaces requires the capability to probe the local composition, map order parameter field...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms5528

    authors： Gai Z,Lin W,Burton JD,Fuchigami K,Snijders PC,Ward TZ,Tsymbal EY,Shen J,Jesse S,Kalinin SV,Baddorf AP

    更新日期：2014-07-24 00:00:00

  • Botulinum toxin A complex exploits intestinal M cells to enter the host and exert neurotoxicity.

    abstract：:To cause food-borne botulism, botulinum neurotoxin (BoNT) in the gastrointestinal lumen must traverse the intestinal epithelial barrier. However, the mechanism by which BoNT crosses the intestinal epithelial barrier remains unclear. BoNTs are produced along with one or more non-toxic components, with which they form p...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms7255

    authors： Matsumura T,Sugawara Y,Yutani M,Amatsu S,Yagita H,Kohda T,Fukuoka S,Nakamura Y,Fukuda S,Hase K,Ohno H,Fujinaga Y

    更新日期：2015-02-17 00:00:00

  • PARP3 is a promoter of chromosomal rearrangements and limits G4 DNA.

    abstract：:Chromosomal rearrangements are essential events in the pathogenesis of both malignant and nonmalignant disorders, yet the factors affecting their formation are incompletely understood. Here we develop a zinc-finger nuclease translocation reporter and screen for factors that modulate rearrangements in human cells. We i...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms15110

    authors： Day TA,Layer JV,Cleary JP,Guha S,Stevenson KE,Tivey T,Kim S,Schinzel AC,Izzo F,Doench J,Root DE,Hahn WC,Price BD,Weinstock DM

    更新日期：2017-04-27 00:00:00

  • Overcoming evanescent field decay using 3D-tapered nanocavities for on-chip targeted molecular analysis.

    abstract：:Enhancement of optical emission on plasmonic nanostructures is intrinsically limited by the distance between the emitter and nanostructure surface, owing to a tightly-confined and exponentially-decaying electromagnetic field. This fundamental limitation prevents efficient application of plasmonic fluorescence enhancem...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-020-16813-5

    authors： Kumar S,Park H,Cho H,Siddique RH,Narasimhan V,Yang D,Choo H

    更新日期：2020-06-10 00:00:00

  • Amino acid-dependent cMyc expression is essential for NK cell metabolic and functional responses in mice.

    abstract：:Natural killer (NK) cells are lymphocytes with important anti-tumour functions. Cytokine activation of NK cell glycolysis and oxidative phosphorylation (OXPHOS) are essential for robust NK cell responses. However, the mechanisms leading to this metabolic phenotype are unclear. Here we show that the transcription facto...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-018-04719-2

    authors： Loftus RM,Assmann N,Kedia-Mehta N,O'Brien KL,Garcia A,Gillespie C,Hukelmann JL,Oefner PJ,Lamond AI,Gardiner CM,Dettmer K,Cantrell DA,Sinclair LV,Finlay DK

    更新日期：2018-06-14 00:00:00

  • Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.

    abstract：:A new paradigm for cellulose depolymerization by fungi focuses on an oxidative mechanism involving cellobiose dehydrogenases (CDH) and copper-dependent lytic polysaccharide monooxygenases (LPMO); however, mechanistic studies have been hampered by the lack of structural information regarding CDH. CDH contains a haem-bi...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms8542

    authors： Tan TC,Kracher D,Gandini R,Sygmund C,Kittl R,Haltrich D,Hällberg BM,Ludwig R,Divne C

    更新日期：2015-07-07 00:00:00

  • A gas-to-particle conversion mechanism helps to explain atmospheric particle formation through clustering of iodine oxides.

    abstract：:Emitted from the oceans, iodine-bearing molecules are ubiquitous in the atmosphere and a source of new atmospheric aerosol particles of potentially global significance. However, its inclusion in atmospheric models is hindered by a lack of understanding of the first steps of the photochemical gas-to-particle conversion...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-020-18252-8

    authors： Gómez Martín JC,Lewis TR,Blitz MA,Plane JMC,Kumar M,Francisco JS,Saiz-Lopez A

    更新日期：2020-09-09 00:00:00

  • Stiff filamentous virus translocations through solid-state nanopores.

    abstract：:The ionic conductance through a nanometer-sized pore in a membrane changes when a biopolymer slides through it, making nanopores sensitive to single molecules in solution. Their possible use for sequencing has motivated numerous studies on how DNA, a semi-flexible polymer, translocates nanopores. Here we study voltage...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms5171

    authors： McMullen A,de Haan HW,Tang JX,Stein D

    更新日期：2014-06-16 00:00:00

  • CD91-dependent programming of T-helper cell responses following heat shock protein immunization.

    abstract：:The immunogenic heat shock proteins (HSPs) gp96, hsp70 and calreticulin (CRT) bind to CD91 on antigen-presenting cells (APCs) for cross-presentation of the HSP-chaperoned peptides. This event leads to priming of T-cell responses. Here we show that CD91 serves as a signalling receptor for these HSPs, allowing for the m...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/ncomms1524

    authors： Pawaria S,Binder RJ

    更新日期：2011-11-01 00:00:00

  • Electrophysiological mechanisms of human memory consolidation.

    abstract：:Consolidation stabilizes memory traces after initial encoding. Rodent studies suggest that memory consolidation depends on replay of stimulus-specific activity patterns during fast hippocampal "ripple" oscillations. Here, we measured replay in intracranial electroencephalography recordings in human epilepsy patients, ...

    journal_title：Nature communications

    pub_type： 杂志文章

    doi：10.1038/s41467-018-06553-y

    authors： Zhang H,Fell J,Axmacher N

    更新日期：2018-10-05 00:00:00