PARP3 is a promoter of chromosomal rearrangements and limits G4 DNA.

Abstract:

:Chromosomal rearrangements are essential events in the pathogenesis of both malignant and nonmalignant disorders, yet the factors affecting their formation are incompletely understood. Here we develop a zinc-finger nuclease translocation reporter and screen for factors that modulate rearrangements in human cells. We identify UBC9 and RAD50 as suppressors and 53BP1, DDB1 and poly(ADP)ribose polymerase 3 (PARP3) as promoters of chromosomal rearrangements across human cell types. We focus on PARP3 as it is dispensable for murine viability and has druggable catalytic activity. We find that PARP3 regulates G quadruplex (G4) DNA in response to DNA damage, which suppresses repair by nonhomologous end-joining and homologous recombination. Chemical stabilization of G4 DNA in PARP3-/- cells leads to widespread DNA double-strand breaks and synthetic lethality. We propose a model in which PARP3 suppresses G4 DNA and facilitates DNA repair by multiple pathways.

journal_name

Nat Commun

journal_title

Nature communications

authors

Day TA,Layer JV,Cleary JP,Guha S,Stevenson KE,Tivey T,Kim S,Schinzel AC,Izzo F,Doench J,Root DE,Hahn WC,Price BD,Weinstock DM

doi

10.1038/ncomms15110

subject

Has Abstract

pub_date

2017-04-27 00:00:00

pages

15110

issn

2041-1723

pii

ncomms15110

journal_volume

8

pub_type

杂志文章
  • A comprehensive, mechanistically detailed, and executable model of the cell division cycle in Saccharomyces cerevisiae.

    abstract::Understanding how cellular functions emerge from the underlying molecular mechanisms is a key challenge in biology. This will require computational models, whose predictive power is expected to increase with coverage and precision of formulation. Genome-scale models revolutionised the metabolic field and made the firs...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08903-w

    authors: Münzner U,Klipp E,Krantz M

    更新日期:2019-03-21 00:00:00

  • 4D Visualization of replication foci in mammalian cells corresponding to individual replicons.

    abstract::Since the pioneering proposal of the replicon model of DNA replication 50 years ago, the predicted replicons have not been identified and quantified at the cellular level. Here, we combine conventional and super-resolution microscopy of replication sites in live and fixed cells with computational image analysis. We co...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11231

    authors: Chagin VO,Casas-Delucchi CS,Reinhart M,Schermelleh L,Markaki Y,Maiser A,Bolius JJ,Bensimon A,Fillies M,Domaing P,Rozanov YM,Leonhardt H,Cardoso MC

    更新日期:2016-04-07 00:00:00

  • Hyperpolarized nanodiamond with long spin-relaxation times.

    abstract::The use of hyperpolarized agents in magnetic resonance, such as (13)C-labelled compounds, enables powerful new imaging and detection modalities that stem from a 10,000-fold boost in signal. A major challenge for the future of the hyperpolarization technique is the inherently short spin-relaxation times, typically <60 ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9459

    authors: Rej E,Gaebel T,Boele T,Waddington DE,Reilly DJ

    更新日期:2015-10-09 00:00:00

  • Reconciling glacial Antarctic water stable isotopes with ice sheet topography and the isotopic paleothermometer.

    abstract::Stable water isotope records from Antarctica are key for our understanding of Quaternary climate variations. However, the exact quantitative interpretation of these important climate proxy records in terms of surface temperature, ice sheet height and other climatic changes is still a matter of debate. Here we report r...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05430-y

    authors: Werner M,Jouzel J,Masson-Delmotte V,Lohmann G

    更新日期:2018-08-30 00:00:00

  • Cytomembrane nanovaccines show therapeutic effects by mimicking tumor cells and antigen presenting cells.

    abstract::Most cancer vaccines are unsuccessful in eliciting clinically relevant effects. Without using exogenous antigens and adoptive cells, we show a concept of utilizing biologically reprogrammed cytomembranes of the fused cells (FCs) derived from dendritic cells (DCs) and cancer cells as tumor vaccines. The fusion of immun...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11157-1

    authors: Liu WL,Zou MZ,Liu T,Zeng JY,Li X,Yu WY,Li CX,Ye JJ,Song W,Feng J,Zhang XZ

    更新日期:2019-07-19 00:00:00

  • Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs.

    abstract::Deep subsurface formations (for example, high-temperature oil reservoirs) are candidate sites for carbon capture and storage technology. However, very little is known about how the subsurface microbial community would respond to an increase in CO2 pressure resulting from carbon capture and storage. Here we construct m...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2998

    authors: Mayumi D,Dolfing J,Sakata S,Maeda H,Miyagawa Y,Ikarashi M,Tamaki H,Takeuchi M,Nakatsu CH,Kamagata Y

    更新日期:2013-01-01 00:00:00

  • Membrane tension controls the assembly of curvature-generating proteins.

    abstract::Proteins containing a Bin/Amphiphysin/Rvs (BAR) domain regulate membrane curvature in the cell. Recent simulations have revealed that BAR proteins assemble into linear aggregates, strongly affecting membrane curvature and its in-plane stress profile. Here, we explore the opposite question: do mechanical properties of ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8219

    authors: Simunovic M,Voth GA

    更新日期:2015-05-26 00:00:00

  • PKA antagonizes CLASP-dependent microtubule stabilization to re-localize Pom1 and buffer cell size upon glucose limitation.

    abstract::Cells couple growth with division and regulate size in response to nutrient availability. In rod-shaped fission yeast, cell-size control occurs at mitotic commitment. An important regulator is the DYRK-family kinase Pom1, which forms gradients from cell poles and inhibits the mitotic activator Cdr2, itself localized a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9445

    authors: Kelkar M,Martin SG

    更新日期:2015-10-07 00:00:00

  • Nanoelectromechanical coupling in fullerene peapods probed by resonant electrical transport experiments.

    abstract::Fullerene peapods, which are carbon nanotubes encapsulating fullerene molecules, can offer enhanced functionality with respect to empty nanotubes. Their prospective applications include, for example, data storage devices, single-electron transistors and spin-qubit arrays for quantum computing. However, the present inc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1034

    authors: Utko P,Ferone R,Krive IV,Shekhter RI,Jonson M,Monthioux M,Noé L,Nygård J

    更新日期:2010-07-13 00:00:00

  • Chaperone-mediated ordered assembly of the SAGA and NuA4 transcription co-activator complexes in yeast.

    abstract::Transcription initiation involves the coordinated activities of large multimeric complexes, but little is known about their biogenesis. Here we report several principles underlying the assembly and topological organization of the highly conserved SAGA and NuA4 co-activator complexes, which share the Tra1 subunit. We s...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13243-w

    authors: Elías-Villalobos A,Toullec D,Faux C,Séveno M,Helmlinger D

    更新日期:2019-11-20 00:00:00

  • Identifying causal gateways and mediators in complex spatio-temporal systems.

    abstract::Identifying regions important for spreading and mediating perturbations is crucial to assess the susceptibilities of spatio-temporal complex systems such as the Earth's climate to volcanic eruptions, extreme events or geoengineering. Here a data-driven approach is introduced based on a dimension reduction, causal reco...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9502

    authors: Runge J,Petoukhov V,Donges JF,Hlinka J,Jajcay N,Vejmelka M,Hartman D,Marwan N,Paluš M,Kurths J

    更新日期:2015-10-07 00:00:00

  • Proteostasis by STUB1/HSP70 complex controls sensitivity to androgen receptor targeted therapy in advanced prostate cancer.

    abstract::Protein homeostasis (proteostasis) is a potential mechanism that contributes to cancer cell survival and drug resistance. Constitutively active androgen receptor (AR) variants confer anti-androgen resistance in advanced prostate cancer. However, the role of proteostasis involved in next generation anti-androgen resist...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07178-x

    authors: Liu C,Lou W,Yang JC,Liu L,Armstrong CM,Lombard AP,Zhao R,Noel ODV,Tepper CG,Chen HW,Dall'Era M,Evans CP,Gao AC

    更新日期:2018-11-16 00:00:00

  • Mutualism supports biodiversity when the direct competition is weak.

    abstract::A key question of theoretical ecology is which properties of ecosystems favour their stability and help maintaining biodiversity. This question recently reconsidered mutualistic systems, generating intense controversy about the role of mutualistic interactions and their network architecture. Here we show analytically ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14326

    authors: Pascual-García A,Bastolla U

    更新日期:2017-02-24 00:00:00

  • TDRD5 binds piRNA precursors and selectively enhances pachytene piRNA processing in mice.

    abstract::Pachytene piRNAs are the most abundant piRNAs in mammalian adult testes. They are generated from long precursor transcripts by the primary piRNA biogenesis pathway but the factors involved in pachytene piRNA precursors processing are poorly understood. Here we show that the Tudor domain-containing 5 (TDRD5) protein is...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02622-w

    authors: Ding D,Liu J,Midic U,Wu Y,Dong K,Melnick A,Latham KE,Chen C

    更新日期:2018-01-09 00:00:00

  • The vectorial control of magnetization by light.

    abstract::Application of coherent light-matter interactions has recently been extended to the ultrafast control of magnetization. An important but unrealized technique is the manipulation of magnetization vector motion to make it follow an arbitrarily designed multidimensional trajectory. Here we demonstrate a full manipulation...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1366

    authors: Kanda N,Higuchi T,Shimizu H,Konishi K,Yoshioka K,Kuwata-Gonokami M

    更新日期:2011-06-21 00:00:00

  • Variant surface glycoprotein density defines an immune evasion threshold for African trypanosomes undergoing antigenic variation.

    abstract::Trypanosoma brucei is a protozoan parasite that evades its host's adaptive immune response by repeatedly replacing its dense variant surface glycoprotein (VSG) coat from its large genomic VSG repertoire. While the mechanisms regulating VSG gene expression and diversification have been examined extensively, the dynamic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00959-w

    authors: Pinger J,Chowdhury S,Papavasiliou FN

    更新日期:2017-10-10 00:00:00

  • Universal structure of transmission eigenchannels inside opaque media.

    abstract::As the desire to explore opaque materials is ordinarily frustrated by multiple scattering of waves, attention has focused on the transmission matrix of the wave field. This matrix gives the fullest account of transmission and conductance and enables the control of the transmitted flux; however, it cannot address the f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7893

    authors: Davy M,Shi Z,Park J,Tian C,Genack AZ

    更新日期:2015-04-20 00:00:00

  • Multimode entanglement in reconfigurable graph states using optical frequency combs.

    abstract::Multimode entanglement is an essential resource for quantum information processing and quantum metrology. However, multimode entangled states are generally constructed by targeting a specific graph configuration. This yields to a fixed experimental setup that therefore exhibits reduced versatility and scalability. Her...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15645

    authors: Cai Y,Roslund J,Ferrini G,Arzani F,Xu X,Fabre C,Treps N

    更新日期:2017-06-06 00:00:00

  • Deficient angiogenesis in redox-dead Cys17Ser PKARIα knock-in mice.

    abstract::Angiogenesis is essential for tissue development, wound healing and tissue perfusion, with its dysregulation linked to tumorigenesis, rheumatoid arthritis and heart disease. Here we show that pro-angiogenic stimuli couple to NADPH oxidase-dependent generation of oxidants that catalyse an activating intermolecular-disu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8920

    authors: Burgoyne JR,Rudyk O,Cho HJ,Prysyazhna O,Hathaway N,Weeks A,Evans R,Ng T,Schröder K,Brandes RP,Shah AM,Eaton P

    更新日期:2015-08-10 00:00:00

  • Electron tunneling at the molecularly thin 2D perovskite and graphene van der Waals interface.

    abstract::Quasi-two-dimensional perovskites have emerged as a new material platform for optoelectronics on account of its intrinsic stability. A major bottleneck to device performance is the high charge injection barrier caused by organic molecular layers on its basal plane, thus the best performing device currently relies on e...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19331-6

    authors: Leng K,Wang L,Shao Y,Abdelwahab I,Grinblat G,Verzhbitskiy I,Li R,Cai Y,Chi X,Fu W,Song P,Rusydi A,Eda G,Maier SA,Loh KP

    更新日期:2020-10-30 00:00:00

  • Graphene liquid crystal retarded percolation for new high-k materials.

    abstract::Graphene flakes with giant shape anisotropy are extensively used to establish connectedness electrical percolation in various heterogeneous systems. However, the percolation behaviour of graphene flakes has been recently predicted to be far more complicated than generally anticipated on the basis of excluded volume ar...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9700

    authors: Yuan J,Luna A,Neri W,Zakri C,Schilling T,Colin A,Poulin P

    更新日期:2015-11-16 00:00:00

  • Pod shattering resistance associated with domestication is mediated by a NAC gene in soybean.

    abstract::Loss of seed dispersal is a key agronomical trait targeted by ancient human selection and has been regarded as a milestone of crop domestication. In this study, in the legume crop soybean Glycine max (L.) Merr. which provides vegetable oils and proteins for humans, we show that the key cellular feature of the shatteri...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4352

    authors: Dong Y,Yang X,Liu J,Wang BH,Liu BL,Wang YZ

    更新日期:2014-01-01 00:00:00

  • Proposal for dark exciton based chemical sensors.

    abstract::The rapidly increasing use of sensors throughout different research disciplines and the demand for more efficient devices with less power consumption depends critically on the emergence of new sensor materials and novel sensor concepts. Atomically thin transition metal dichalcogenides have a huge potential for sensor ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14776

    authors: Feierabend M,Berghäuser G,Knorr A,Malic E

    更新日期:2017-03-15 00:00:00

  • Genetic variation at MECOM, TERT, JAK2 and HBS1L-MYB predisposes to myeloproliferative neoplasms.

    abstract::Clonal proliferation in myeloproliferative neoplasms (MPN) is driven by somatic mutations in JAK2, CALR or MPL, but the contribution of inherited factors is poorly characterized. Using a three-stage genome-wide association study of 3,437 MPN cases and 10,083 controls, we identify two SNPs with genome-wide significance...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7691

    authors: Tapper W,Jones AV,Kralovics R,Harutyunyan AS,Zoi K,Leung W,Godfrey AL,Guglielmelli P,Callaway A,Ward D,Aranaz P,White HE,Waghorn K,Lin F,Chase A,Baxter EJ,Maclean C,Nangalia J,Chen E,Evans P,Short M,Jack A,Wal

    更新日期:2015-04-07 00:00:00

  • ATF3 acts as a rheostat to control JNK signalling during intestinal regeneration.

    abstract::Epithelial barrier function is maintained by coordination of cell proliferation and cell loss, whereas barrier dysfunction can lead to disease and organismal death. JNK signalling is a conserved stress signalling pathway activated by bacterial infection and tissue damage, often leading to apoptotic cell death and comp...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14289

    authors: Zhou J,Edgar BA,Boutros M

    更新日期:2017-03-08 00:00:00

  • Merging rhodium-catalysed C-H activation and hydroamination in a highly selective [4+2] imine/alkyne annulation.

    abstract::Catalytic C-H activation and hydroamination represent two important strategies for eco-friendly chemical synthesis with high atom efficiency and reduced waste production. Combining both C-H activation and hydroamination in a cascade process, preferably with a single catalyst, would allow rapid access to valuable nitro...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11506

    authors: Manan RS,Zhao P

    更新日期:2016-06-20 00:00:00

  • Multi-scale magnetic mapping of serpentinite carbonation.

    abstract::Peridotite carbonation represents a critical step within the long-term carbon cycle by sequestering volatile CO2 in solid carbonate. This has been proposed as one potential pathway to mitigate the effects of greenhouse gas release. Most of our current understanding of reaction mechanisms is based on hand specimen and ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01610-4

    authors: Tominaga M,Beinlich A,Lima EA,Tivey MA,Hampton BA,Weiss B,Harigane Y

    更新日期:2017-11-30 00:00:00

  • Crystallization of DNA-coated colloids.

    abstract::DNA-coated colloids hold great promise for self-assembly of programmed heterogeneous microstructures, provided they not only bind when cooled below their melting temperature, but also rearrange so that aggregated particles can anneal into the structure that minimizes the free energy. Unfortunately, DNA-coated colloids...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8253

    authors: Wang Y,Wang Y,Zheng X,Ducrot É,Yodh JS,Weck M,Pine DJ

    更新日期:2015-06-16 00:00:00

  • The central role of EED in the orchestration of polycomb group complexes.

    abstract::Polycomb repressive complexes 1 and 2 (PRC1 and 2) play a critical role in the epigenetic regulation of transcription during cellular differentiation, stem cell pluripotency and neoplastic progression. Here we show that the polycomb group protein EED, a core component of PRC2, physically interacts with and functions a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4127

    authors: Cao Q,Wang X,Zhao M,Yang R,Malik R,Qiao Y,Poliakov A,Yocum AK,Li Y,Chen W,Cao X,Jiang X,Dahiya A,Harris C,Feng FY,Kalantry S,Qin ZS,Dhanasekaran SM,Chinnaiyan AM

    更新日期:2014-01-01 00:00:00

  • Multi-level chirality in liquid crystals formed by achiral molecules.

    abstract::Complex materials often exhibit a hierarchical structure with an intriguing mechanism responsible for the 'propagation' of order from the molecular to the nano- or micro-scale level. In particular, the chirality of biological molecules such as nucleic acids and amino acids is responsible for the helical structure of D...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09862-y

    authors: Salamończyk M,Vaupotič N,Pociecha D,Walker R,Storey JMD,Imrie CT,Wang C,Zhu C,Gorecka E

    更新日期:2019-04-23 00:00:00