Abstract:
:Somatic mutations contribute to tumorigenesis. Although these mutations occur in all proliferating cells, their accumulation under non-malignant conditions, such as in autoimmune disorders, has not been investigated. Here, we show that patients with newly diagnosed rheumatoid arthritis have expanded CD8+ T-cell clones; in 20% (5/25) of patients CD8+ T cells, but not CD4+ T cells, harbour somatic mutations. In healthy controls (n=20), only one mutation is identified in the CD8+ T-cell pool. Mutations exist exclusively in the expanded CD8+ effector-memory subset, persist during follow-up, and are predicted to change protein functions. Some of the mutated genes (SLAMF6, IRF1) have previously been associated with autoimmunity. RNA sequencing of mutation-harbouring cells shows signatures corresponding to cell proliferation. Our data provide evidence of accumulation of somatic mutations in expanded CD8+ T cells, which may have pathogenic significance for RA and other autoimmune diseases.
journal_name
Nat Communjournal_title
Nature communicationsauthors
Savola P,Kelkka T,Rajala HL,Kuuliala A,Kuuliala K,Eldfors S,Ellonen P,Lagström S,Lepistö M,Hannunen T,Andersson EI,Khajuria RK,Jaatinen T,Koivuniemi R,Repo H,Saarela J,Porkka K,Leirisalo-Repo M,Mustjoki Sdoi
10.1038/ncomms15869subject
Has Abstractpub_date
2017-06-21 00:00:00pages
15869issn
2041-1723pii
ncomms15869journal_volume
8pub_type
杂志文章abstract::Understanding and reshaping cellular behaviors with synthetic gene networks requires the ability to sense and respond to changes in the intracellular environment. Intracellular proteins are involved in almost all cellular processes, and thus can provide important information about changes in cellular conditions such a...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-03984-5
更新日期:2018-05-14 00:00:00
abstract::Natural killer (NK) cells are reported to have immunological memory, with CD49a+ liver-resident NK cells shown to confer hapten-specific memory responses, but how this memory is induced or maintained is unclear. Here we show that memory type I innate lymphoid cells (ILC1s), which express IL-7Rα, are generated in the l...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-07405-5
更新日期:2018-11-19 00:00:00
abstract::Vortices play a crucial role in determining the properties of superconductors as well as their applications. Therefore, characterization and manipulation of vortices, especially at the single-vortex level, is of great importance. Among many techniques to study single vortices, scanning tunnelling microscopy (STM) stan...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms13880
更新日期:2016-12-09 00:00:00
abstract::Light propagating in tissue attains a spectrum that varies with location due to wavelength-dependent fluence attenuation, an effect that causes spectral corruption. Spectral corruption has limited the quantification accuracy of optical and optoacoustic spectroscopic methods, and impeded the goal of imaging blood oxyge...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12121
更新日期:2016-06-30 00:00:00
abstract::Previous transcriptomic profiling studies have typically focused on separately analyzing mRNA expression, alternative splicing and alternative polyadenylation differences between cell and tissue types. However, the relative contribution of these three transcriptomic regulatory layers to cell type specification is poor...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-20483-8
更新日期:2021-01-12 00:00:00
abstract::A detailed understanding of the human infectious reservoir is essential for improving malaria transmission-reducing interventions. Here we report a multi-regional assessment of population-wide malaria transmission potential based on 1209 mosquito feeding assays in endemic areas of Burkina Faso and Kenya. Across both s...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-017-01270-4
更新日期:2017-10-26 00:00:00
abstract::Central insulin is thought to act at the neural interface between metabolic and hedonic drives to eat. Here, using pharmacological fMRI, we show that intranasal insulin (INI) changes the value of food cues through modulation of mesolimbic pathways. Overnight fasted participants rated the palatability of food pictures ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms16052
更新日期:2017-07-18 00:00:00
abstract::Microbial fermentation of lignocellulosic biomass to produce industrial chemicals is exacerbated by the recalcitrant network of lignin, cellulose and hemicelluloses comprising the plant secondary cell wall. In this study, we show that transgenic poplar (Populus trichocarpa) lines can be solubilized without any pretrea...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-11376-6
更新日期:2019-08-07 00:00:00
abstract::Charge-to-spin conversion in various materials is the key for the fundamental understanding of spin-orbitronics and efficient magnetization manipulation. Here we report the direct spatial imaging of current-induced spin accumulation at the channel edges of Bi2Se3 and BiSbTeSe2 topological insulators as well as Pt by a...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-04939-6
更新日期:2018-06-27 00:00:00
abstract::Spin-orbit torque has recently been intensively investigated for the purposes of manipulating the magnetization in magnetic nano-devices and understanding fundamental physics. Therefore, the search for novel materials or material combinations that exhibit a strong enough spin-torque effect has become one of the top pr...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-06518-1
更新日期:2018-09-28 00:00:00
abstract::Blood vessels in the central nervous system (CNS) develop unique features, but the contribution of CNS neurons to regulating those features is not fully understood. We report that inhibiting spontaneous cholinergic activity or reducing starburst amacrine cell numbers prevents invasion of endothelial cells into the dee...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-10219-8
更新日期:2019-06-06 00:00:00
abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title:Nature communications
pub_type: 已发布勘误
doi:10.1038/s41467-019-13715-z
更新日期:2019-12-06 00:00:00
abstract::In 2016 the World Health Organization identified 21 countries that could eliminate malaria by 2020. Monitoring progress towards this goal requires tracking ongoing transmission. Here we develop methods that estimate individual reproduction numbers and their variation through time and space. Individual reproduction num...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-04577-y
更新日期:2018-06-26 00:00:00
abstract::Capturing and controlling plasmons at buried interfaces with nanometre and femtosecond resolution has yet to be achieved and is critical for next generation plasmonic devices. Here we use light to excite plasmonic interference patterns at a buried metal-dielectric interface in a nanostructured thin film. Plasmons are ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms13156
更新日期:2016-10-11 00:00:00
abstract::Naturally heat-resistant coral populations hold significant potential for facilitating coral reef survival under rapid climate change. However, it remains poorly understood whether they can acclimatize to ocean warming when superimposed on their already thermally-extreme habitats. Furthermore, it is unknown whether th...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-12065-0
更新日期:2019-09-17 00:00:00
abstract::The total number of acquired melanocytic nevi on the skin is strongly correlated with melanoma risk. Here we report a meta-analysis of 11 nevus GWAS from Australia, Netherlands, UK, and USA comprising 52,506 individuals. We confirm known loci including MTAP, PLA2G6, and IRF4, and detect novel SNPs in KITLG and a regio...
journal_title:Nature communications
pub_type: 杂志文章,meta分析
doi:10.1038/s41467-018-06649-5
更新日期:2018-11-14 00:00:00
abstract::The cellular mechanisms driving cardiac tissue formation remain poorly understood, largely due to the structural and functional complexity of the heart. It is unclear whether newly generated myocytes originate from cardiac stem/progenitor cells or from pre-existing cardiomyocytes that re-enter the cell cycle. Here, we...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-02891-z
更新日期:2018-02-21 00:00:00
abstract::Aviation emissions of nitrogen oxides (NOx) alter the composition of the atmosphere, perturbing the greenhouse gases ozone and methane, resulting in positive and negative radiative forcing effects, respectively. In 1981, the International Civil Aviation Organization adopted a first certification standard for the regul...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-20771-3
更新日期:2021-01-25 00:00:00
abstract::Insulin regulates glycaemia, lipogenesis and increases mRNA translation. Cells with reduced eukaryotic initiation factor 6 (eIF6) do not increase translation in response to insulin. The role of insulin-regulated translation is unknown. Here we show that reduction of insulin-regulated translation in mice heterozygous f...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms9261
更新日期:2015-09-18 00:00:00
abstract::Efficient charge separation is of crucial importance for the improvement of photocatalytic activity for solar hydrogen evolution. Here we report efficient photo-generated charge separation by twin-induced one-dimensional homojunctions with type-II staggered band alignment, using a ternary chalcogenate, i.e. Cd0.5Zn0.5...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms3278
更新日期:2013-01-01 00:00:00
abstract::Suppressor of Fused (SuFu), a tumour suppressor mutated in medulloblastoma, is a central player of Hh signalling, a pathway crucial for development and deregulated in cancer. Although the control of Gli transcription factors by SuFu is critical in Hh signalling, our understanding of the mechanism regulating this key e...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-03339-0
更新日期:2018-03-07 00:00:00
abstract::Colloidal semiconductor nanocrystals have attracted significant interest for applications in solution-processable devices such as light-emitting diodes and solar cells. However, a poor understanding of charge transport in nanocrystal assemblies, specifically the relation between electrical conductance in dark and unde...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms1492
更新日期:2011-09-27 00:00:00
abstract::Zero-energy particles (such as Majorana fermions) are newly predicted quasiparticles and are expected to play an important role in fault-tolerant quantum computation. In conventional Hermitian quantum systems, however, such zero states are vulnerable and even become vanishing if couplings with surroundings are of the ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-03822-8
更新日期:2018-04-03 00:00:00
abstract::Holocene summer temperature reconstructions from northern Europe based on sedimentary pollen records suggest an onset of peak summer warmth around 9,000 years ago. However, pollen-based temperature reconstructions are largely driven by changes in the proportions of tree taxa, and thus the early-Holocene warming signal...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms7809
更新日期:2015-04-10 00:00:00
abstract::Adult neural stem cells (NSCs) reside in a specialized microenvironment, the subventricular zone (SVZ), which provides them with unique signaling cues to control their basic properties and prevent their exhaustion. While the signaling mechanisms that regulate NSC lineage progression are well characterized, the molecul...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-017-02440-0
更新日期:2018-01-02 00:00:00
abstract::Ligand-induced receptor dimerization has traditionally been viewed as the key event in transmembrane signalling by epidermal growth factor receptors (EGFRs). Here we show that the Caenorhabditis elegans EGFR orthologue LET-23 is constitutively dimeric, yet responds to its ligand LIN-3 without changing oligomerization ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms8380
更新日期:2015-06-10 00:00:00
abstract::X-linked lymphoproliferative syndrome type-2 (XLP-2) is a primary immunodeficiency disease attributed to XIAP mutation and is triggered by infection. Here, we show that mouse Xiap-/- regulatory T (Treg) cells and human XIAP-deficient Treg cells are defective in suppressive function. The Xiap-/- Treg cell defect is lin...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-02862-4
更新日期:2018-01-31 00:00:00
abstract::Supported atomic clusters with uniform metal sites and definite low-nuclearity are intermediate states between single-atom catalysts (SACs) and nanoparticles in size. Benefiting from the presence of metal-metal bonds, supported atomic clusters can trigger synergistic effects among every metal atom, which contributes t...
journal_title:Nature communications
pub_type: 杂志文章,评审
doi:10.1038/s41467-020-19571-6
更新日期:2020-11-18 00:00:00
abstract::Charge/discharge of lithium-ion battery cathode material LiFePO4 is mediated by the structure and properties of the interface between delithiated and lithiated phases. Direct observations of the interface in a partially delithiated single crystal as a function of time using scanning transmission electron microscopy an...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-05241-1
更新日期:2018-07-20 00:00:00
abstract::Transition metal-catalyzed C-H activation and radical reactions are two versatile strategies to construct diverse organic skeletons. Here we show the construction of a class of flavylium fluorophores via the merge of radical chemistry and C-H activation starting from (hetero)aryl ketones and alkynes. This protocol is ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-13611-6
更新日期:2019-12-11 00:00:00