The RanBP2/RanGAP1*SUMO1/Ubc9 SUMO E3 ligase is a disassembly machine for Crm1-dependent nuclear export complexes.

Abstract:

:Continuous cycles of nucleocytoplasmic transport require disassembly of transport receptor/Ran-GTP complexes in the cytoplasm. A basic disassembly mechanism in all eukaryotes depends on soluble RanGAP and RanBP1. In vertebrates, a significant fraction of RanGAP1 stably interacts with the nucleoporin RanBP2 at a binding site that is flanked by FG-repeats and Ran-binding domains, and overlaps with RanBP2's SUMO E3 ligase region. Here, we show that the RanBP2/RanGAP1*SUMO1/Ubc9 complex functions as an autonomous disassembly machine with a preference for the export receptor Crm1. We describe three in vitro reconstituted disassembly intermediates, which show binding of a Crm1 export complex via two FG-repeat patches, cargo-release by RanBP2's Ran-binding domains and retention of free Crm1 at RanBP2 after Ran-GTP hydrolysis. Intriguingly, all intermediates are compatible with SUMO E3 ligase activity, suggesting that the RanBP2/RanGAP1*SUMO1/Ubc9 complex may link Crm1- and SUMO-dependent functions.

journal_name

Nat Commun

journal_title

Nature communications

authors

Ritterhoff T,Das H,Hofhaus G,Schröder RR,Flotho A,Melchior F

doi

10.1038/ncomms11482

subject

Has Abstract

pub_date

2016-05-10 00:00:00

pages

11482

issn

2041-1723

pii

ncomms11482

journal_volume

7

pub_type

杂志文章
  • Lattice doping regulated interfacial reactions in cathode for enhanced cycling stability.

    abstract::Interfacial reactions between electrode and electrolyte are critical, either beneficial or detrimental, for the performance of rechargeable batteries. The general approaches of controlling interfacial reactions are either applying a coating layer on cathode or modifying the electrolyte chemistry. Here we demonstrate a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11299-2

    authors: Zou L,Li J,Liu Z,Wang G,Manthiram A,Wang C

    更新日期:2019-08-01 00:00:00

  • Unveiling phonons in a molecular qubit with four-dimensional inelastic neutron scattering and density functional theory.

    abstract::Phonons are the main source of relaxation in molecular nanomagnets, and different mechanisms have been proposed in order to explain the wealth of experimental findings. However, very limited experimental investigations on phonons in these systems have been performed so far, yielding no information about their dispersi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15475-7

    authors: Garlatti E,Tesi L,Lunghi A,Atzori M,Voneshen DJ,Santini P,Sanvito S,Guidi T,Sessoli R,Carretta S

    更新日期:2020-04-09 00:00:00

  • Characterizing large-scale quantum computers via cycle benchmarking.

    abstract::Quantum computers promise to solve certain problems more efficiently than their digital counterparts. A major challenge towards practically useful quantum computing is characterizing and reducing the various errors that accumulate during an algorithm running on large-scale processors. Current characterization techniqu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13068-7

    authors: Erhard A,Wallman JJ,Postler L,Meth M,Stricker R,Martinez EA,Schindler P,Monz T,Emerson J,Blatt R

    更新日期:2019-11-25 00:00:00

  • Structure and substrate selectivity of the 750-kDa α6β6 holoenzyme of geranyl-CoA carboxylase.

    abstract::Geranyl-CoA carboxylase (GCC) is essential for the growth of Pseudomonas organisms with geranic acid as the sole carbon source. GCC has the same domain organization and shares strong sequence conservation with the related biotin-dependent carboxylases 3-methylcrotonyl-CoA carboxylase (MCC) and propionyl-CoA carboxylas...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9986

    authors: Jurado AR,Huang CS,Zhang X,Zhou ZH,Tong L

    更新日期:2015-11-23 00:00:00

  • Uranium transport in acidic brines under reducing conditions.

    abstract::The behavior of uranium in environments, ranging from those of natural systems responsible for the formation of uranium deposits to those of nuclear reactors providing 11% of the world's electricity, is governed by processes involving high-temperature aqueous solutions. It has been well documented that uranium is mobi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03564-7

    authors: Timofeev A,Migdisov AA,Williams-Jones AE,Roback R,Nelson AT,Xu H

    更新日期:2018-04-16 00:00:00

  • A combinatorial extracellular matrix platform identifies cell-extracellular matrix interactions that correlate with metastasis.

    abstract::Extracellular matrix interactions have essential roles in normal physiology and many pathological processes. Although the importance of extracellular matrix interactions in metastasis is well documented, systematic approaches to identify their roles in distinct stages of tumorigenesis have not been described. Here we ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2128

    authors: Reticker-Flynn NE,Malta DF,Winslow MM,Lamar JM,Xu MJ,Underhill GH,Hynes RO,Jacks TE,Bhatia SN

    更新日期:2012-01-01 00:00:00

  • Tunable genetic devices through simultaneous control of transcription and translation.

    abstract::Synthetic genetic circuits allow us to modify the behavior of living cells. However, changes in environmental conditions and unforeseen interactions with the host cell can cause deviations from a desired function, resulting in the need for time-consuming reassembly to fix these issues. Here, we use a regulatory motif ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15653-7

    authors: Bartoli V,Meaker GA,di Bernardo M,Gorochowski TE

    更新日期:2020-04-29 00:00:00

  • A helitron-induced RabGDIα variant causes quantitative recessive resistance to maize rough dwarf disease.

    abstract::Maize rough dwarf disease (MRDD), caused by various species of the genus Fijivirus, threatens maize production worldwide. We previously identified a quantitative locus qMrdd1 conferring recessive resistance to one causal species, rice black-streaked dwarf virus (RBSDV). Here, we show that Rab GDP dissociation inhibito...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14372-3

    authors: Liu Q,Deng S,Liu B,Tao Y,Ai H,Liu J,Zhang Y,Zhao Y,Xu M

    更新日期:2020-01-24 00:00:00

  • Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers.

    abstract::Human endogenous retroviruses (HERV) form a substantial part of the human genome, but mostly remain transcriptionally silent under strict epigenetic regulation, yet can potentially be reactivated by malignant transformation or epigenetic therapies. Here, we evaluate the potential for T cell recognition of HERV element...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19464-8

    authors: Saini SK,Ørskov AD,Bjerregaard AM,Unnikrishnan A,Holmberg-Thydén S,Borch A,Jensen KV,Anande G,Bentzen AK,Marquard AM,Tamhane T,Treppendahl MB,Gang AO,Dufva IH,Szallasi Z,Ternette N,Pedersen AG,Eklund AC,Pimanda J,Gr

    更新日期:2020-11-09 00:00:00

  • Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.

    abstract::Congenital Zika syndrome (CZS) causes early brain development impairment by affecting neural progenitor cells (NPCs). Here, we analyze NPCs from three pairs of dizygotic twins discordant for CZS. We compare by RNA-Seq the NPCs derived from CZS-affected and CZS-unaffected twins. Prior to Zika virus (ZIKV) infection the...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02790-9

    authors: Caires-Júnior LC,Goulart E,Melo US,Araujo BHS,Alvizi L,Soares-Schanoski A,de Oliveira DF,Kobayashi GS,Griesi-Oliveira K,Musso CM,Amaral MS,daSilva LF,Astray RM,Suárez-Patiño SF,Ventini DC,Gomes da Silva S,Yamamoto GL,Ez

    更新日期:2018-02-02 00:00:00

  • Model evidence for a seasonal bias in Antarctic ice cores.

    abstract::Much of the global annual mean temperature change over Quaternary glacial cycles can be attributed to slow ice sheet and greenhouse gas feedbacks, but analysis of the short-term response to orbital forcings has the potential to reveal key relationships in the climate system. In particular, obliquity and precession bot...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03800-0

    authors: Erb MP,Jackson CS,Broccoli AJ,Lea DW,Valdes PJ,Crucifix M,DiNezio PN

    更新日期:2018-04-10 00:00:00

  • Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains.

    abstract::Proximity-ligation methods such as Hi-C allow us to map physical DNA-DNA interactions along the genome, and reveal its organization into topologically associating domains (TADs). As the Hi-C data accumulate, computational methods were developed for identifying domain borders in multiple cell types and organisms. Here,...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02386-3

    authors: Ron G,Globerson Y,Moran D,Kaplan T

    更新日期:2017-12-21 00:00:00

  • Single-breath-hold photoacoustic computed tomography of the breast.

    abstract::We have developed a single-breath-hold photoacoustic computed tomography (SBH-PACT) system to reveal detailed angiographic structures in human breasts. SBH-PACT features a deep penetration depth (4 cm in vivo) with high spatial and temporal resolutions (255 µm in-plane resolution and a 10 Hz 2D frame rate). By scannin...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04576-z

    authors: Lin L,Hu P,Shi J,Appleton CM,Maslov K,Li L,Zhang R,Wang LV

    更新日期:2018-06-15 00:00:00

  • High efficiency perovskite quantum dot solar cells with charge separating heterostructure.

    abstract::Metal halide perovskite semiconductors possess outstanding characteristics for optoelectronic applications including but not limited to photovoltaics. Low-dimensional and nanostructured motifs impart added functionality which can be exploited further. Moreover, wider cation composition tunability and tunable surface l...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10856-z

    authors: Zhao Q,Hazarika A,Chen X,Harvey SP,Larson BW,Teeter GR,Liu J,Song T,Xiao C,Shaw L,Zhang M,Li G,Beard MC,Luther JM

    更新日期:2019-06-28 00:00:00

  • Synthetic TRuC receptors engaging the complete T cell receptor for potent anti-tumor response.

    abstract::T cells expressing CD19-targeting chimeric antigen receptors (CARs) reveal high efficacy in the treatment of B cell malignancies. Here, we report that T cell receptor fusion constructs (TRuCs) comprising an antibody-based binding domain fused to T cell receptor (TCR) subunits can effectively reprogram an intact TCR co...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10097-0

    authors: Baeuerle PA,Ding J,Patel E,Thorausch N,Horton H,Gierut J,Scarfo I,Choudhary R,Kiner O,Krishnamurthy J,Le B,Morath A,Baldeviano GC,Quinn J,Tavares P,Wei Q,Weiler S,Maus MV,Getts D,Schamel WW,Hofmeister R

    更新日期:2019-05-07 00:00:00

  • Boosting lithium storage in covalent organic framework via activation of 14-electron redox chemistry.

    abstract::Conjugated polymeric molecules have been heralded as promising electrode materials for the next-generation energy-storage technologies owing to their chemical flexibility at the molecular level, environmental benefit, and cost advantage. However, before any practical implementation takes place, the low capacity, poor ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-02889-7

    authors: Lei Z,Yang Q,Xu Y,Guo S,Sun W,Liu H,Lv LP,Zhang Y,Wang Y

    更新日期:2018-02-08 00:00:00

  • Clonal selection in the human Vδ1 T cell repertoire indicates γδ TCR-dependent adaptive immune surveillance.

    abstract::γδ T cells are considered to be innate-like lymphocytes that respond rapidly to stress without clonal selection and differentiation. Here we use next-generation sequencing to probe how this paradigm relates to human Vδ2neg T cells, implicated in responses to viral infection and cancer. The prevalent Vδ1 T cell recepto...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14760

    authors: Davey MS,Willcox CR,Joyce SP,Ladell K,Kasatskaya SA,McLaren JE,Hunter S,Salim M,Mohammed F,Price DA,Chudakov DM,Willcox BE

    更新日期:2017-03-01 00:00:00

  • High-energy-density dual-ion battery for stationary storage of electricity using concentrated potassium fluorosulfonylimide.

    abstract::Graphite dual-ion batteries represent a potential battery concept for large-scale stationary storage of electricity, especially when constructed free of lithium and other chemical elements with limited natural reserves. Owing to their non-rocking-chair operation mechanism, however, the practical deployment of graphite...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06923-6

    authors: Kravchyk KV,Bhauriyal P,Piveteau L,Guntlin CP,Pathak B,Kovalenko MV

    更新日期:2018-10-26 00:00:00

  • Resident c-kit(+) cells in the heart are not cardiac stem cells.

    abstract::Identifying a bona fide population of cardiac stem cells (CSCs) is a critical step for developing cell-based therapies for heart failure patients. Previously, cardiac c-kit(+) cells were reported to be CSCs with a potential to become myocardial, endothelial and smooth muscle cells in vitro and after cardiac injury. He...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9701

    authors: Sultana N,Zhang L,Yan J,Chen J,Cai W,Razzaque S,Jeong D,Sheng W,Bu L,Xu M,Huang GY,Hajjar RJ,Zhou B,Moon A,Cai CL

    更新日期:2015-10-30 00:00:00

  • CLIC4 regulates apical exocytosis and renal tube luminogenesis through retromer- and actin-mediated endocytic trafficking.

    abstract::Chloride intracellular channel 4 (CLIC4) is a mammalian homologue of EXC-4 whose mutation is associated with cystic excretory canals in nematodes. Here we show that CLIC4-null mouse embryos exhibit impaired renal tubulogenesis. In both developing and developed kidneys, CLIC4 is specifically enriched in the proximal tu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10412

    authors: Chou SY,Hsu KS,Otsu W,Hsu YC,Luo YC,Yeh C,Shehab SS,Chen J,Shieh V,He GA,Marean MB,Felsen D,Ding A,Poppas DP,Chuang JZ,Sung CH

    更新日期:2016-01-20 00:00:00

  • Active acetylcholine receptors prevent the atrophy of skeletal muscles and favor reinnervation.

    abstract::Denervation of skeletal muscles induces severe muscle atrophy, which is preceded by cellular alterations such as increased plasma membrane permeability, reduced resting membrane potential and accelerated protein catabolism. The factors that induce these changes remain unknown. Conversely, functional recovery following...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-14063-8

    authors: Cisterna BA,Vargas AA,Puebla C,Fernández P,Escamilla R,Lagos CF,Matus MF,Vilos C,Cea LA,Barnafi E,Gaete H,Escobar DF,Cardozo CP,Sáez JC

    更新日期:2020-02-26 00:00:00

  • The MerR-like protein BldC binds DNA direct repeats as cooperative multimers to regulate Streptomyces development.

    abstract::Streptomycetes are notable for their complex life cycle and production of most clinically important antibiotics. A key factor that controls entry into development and the onset of antibiotic production is the 68-residue protein, BldC. BldC is a putative DNA-binding protein related to MerR regulators, but lacks coiled-...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03576-3

    authors: Schumacher MA,den Hengst CD,Bush MJ,Le TBK,Tran NT,Chandra G,Zeng W,Travis B,Brennan RG,Buttner MJ

    更新日期:2018-03-19 00:00:00

  • Splicing modulators act at the branch point adenosine binding pocket defined by the PHF5A-SF3b complex.

    abstract::Pladienolide, herboxidiene and spliceostatin have been identified as splicing modulators that target SF3B1 in the SF3b subcomplex. Here we report that PHF5A, another component of this subcomplex, is also targeted by these compounds. Mutations in PHF5A-Y36, SF3B1-K1071, SF3B1-R1074 and SF3B1-V1078 confer resistance to ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15522

    authors: Teng T,Tsai JH,Puyang X,Seiler M,Peng S,Prajapati S,Aird D,Buonamici S,Caleb B,Chan B,Corson L,Feala J,Fekkes P,Gerard B,Karr C,Korpal M,Liu X,T Lowe J,Mizui Y,Palacino J,Park E,Smith PG,Subramanian V,Wu ZJ

    更新日期:2017-05-25 00:00:00

  • Translational repression by a miniature inverted-repeat transposable element in the 3' untranslated region.

    abstract::Transposable elements constitute a substantial portion of eukaryotic genomes and contribute to genomic variation, function, and evolution. Miniature inverted-repeat transposable elements (MITEs), as DNA transposons, are widely distributed in plant and animal genomes. Previous studies have suggested that retrotransposo...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14651

    authors: Shen J,Liu J,Xie K,Xing F,Xiong F,Xiao J,Li X,Xiong L

    更新日期:2017-03-03 00:00:00

  • Impaired mitophagy links mitochondrial disease to epithelial stress in methylmalonyl-CoA mutase deficiency.

    abstract::Deregulation of mitochondrial network in terminally differentiated cells contributes to a broad spectrum of disorders. Methylmalonic acidemia (MMA) is one of the most common inherited metabolic disorders, due to deficiency of the mitochondrial methylmalonyl-coenzyme A mutase (MMUT). How MMUT deficiency triggers cell d...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14729-8

    authors: Luciani A,Schumann A,Berquez M,Chen Z,Nieri D,Failli M,Debaix H,Festa BP,Tokonami N,Raimondi A,Cremonesi A,Carrella D,Forny P,Kölker S,Diomedi Camassei F,Diaz F,Moraes CT,Di Bernardo D,Baumgartner MR,Devuyst O

    更新日期:2020-02-20 00:00:00

  • Tuning defects in oxides at room temperature by lithium reduction.

    abstract::Defects can greatly influence the properties of oxide materials; however, facile defect engineering of oxides at room temperature remains challenging. The generation of defects in oxides is difficult to control by conventional chemical reduction methods that usually require high temperatures and are time consuming. He...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03765-0

    authors: Ou G,Xu Y,Wen B,Lin R,Ge B,Tang Y,Liang Y,Yang C,Huang K,Zu D,Yu R,Chen W,Li J,Wu H,Liu LM,Li Y

    更新日期:2018-04-03 00:00:00

  • Using somatic variant richness to mine signals from rare variants in the cancer genome.

    abstract::To date, the vast preponderance of somatic variants observed in the cancer genome have been rare variants, and it is common in practice to encounter in a new tumor variants that have not been observed previously. Here we focus on probability estimation for encountering such hitherto unseen variants. We draw upon stati...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13402-z

    authors: Chakraborty S,Arora A,Begg CB,Shen R

    更新日期:2019-12-03 00:00:00

  • Quantum coherence induces pulse shape modification in a semiconductor optical amplifier at room temperature.

    abstract::Coherence in light-matter interaction is a necessary ingredient if light is used to control the quantum state of a material system. Coherent effects are firmly associated with isolated systems kept at low temperature. The exceedingly fast dephasing in condensed matter environments, in particular at elevated temperatur...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3953

    authors: Kolarczik M,Owschimikow N,Korn J,Lingnau B,Kaptan Y,Bimberg D,Schöll E,Lüdge K,Woggon U

    更新日期:2013-01-01 00:00:00

  • Phototrophic purple bacteria as optoacoustic in vivo reporters of macrophage activity.

    abstract::Τhe morphology, physiology and immunology, of solid tumors exhibit spatial heterogeneity which complicates our understanding of cancer progression and therapy response. Understanding spatial heterogeneity necessitates high resolution in vivo imaging of anatomical and pathophysiological tumor information. We introduce ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09081-5

    authors: Peters L,Weidenfeld I,Klemm U,Loeschcke A,Weihmann R,Jaeger KE,Drepper T,Ntziachristos V,Stiel AC

    更新日期:2019-03-13 00:00:00

  • Genome-scale proteome quantification by DEEP SEQ mass spectrometry.

    abstract::Advances in chemistry and massively parallel detection underlie DNA-sequencing platforms that are poised for application in personalized medicine. In stark contrast, systematic generation of protein-level data lags well behind genomics in virtually every aspect: depth of coverage, throughput, ease of sample preparatio...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3171

    authors: Zhou F,Lu Y,Ficarro SB,Adelmant G,Jiang W,Luckey CJ,Marto JA

    更新日期:2013-01-01 00:00:00