Modeling by homology of RNA binding domain in A1 hnRNP protein.

Abstract:

:Eukaryotic nuclear RNA binding proteins share a common sequence motif thought to be implicated in RNA binding. One of the two domains present in A1 hnRNP protein, has been modelled by homology in order to make a prediction of the main features of the RNA binding site. Acylphosphatase (EC 3.6.1.7) was selected as template for the modeling experiment. The predicted RNA binding site is a beta-sheet containing the two RNP consensus sequences as well as lysines and arginines conserved among the family.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Ghetti A,Bolognesi M,Cobianchi F,Morandi C

doi

10.1016/0014-5793(90)80863-e

subject

Has Abstract

pub_date

1990-12-17 00:00:00

pages

272-6

issue

1-2

eissn

0014-5793

issn

1873-3468

pii

0014-5793(90)80863-E

journal_volume

277

pub_type

杂志文章
  • Helicobacter mustelae lipid A structure differs from that of Helicobacter pylori.

    abstract::The lipid A structure of the Gram-negative bacterium Helicobacter mustelae, a ferret gastric pathogen responsible for the onset of gastric diseases in its host, was investigated. Two variant lipid A structures were found in the same strain. One structure contained a bisphosphorylated beta-(1-->6)-linked D-glucosamine ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(01)02496-6

    authors: Thérisod H,Monteiro MA,Perry MB,Caroff M

    更新日期:2001-06-15 00:00:00

  • Reversal of oxidative phosphorylation in submitochondrial particles using glucose 6-phosphate and hexokinase as an ATP regenerating system.

    abstract::During steady-state, the Pi released in the medium is derived from glucose-6-phosphate which continuously regenerates the ATP hydrolyzed. A membrane potential (delta psi) can be built up in submitochondrial particles using glucose-6-phosphate and hexokinase as an ATP-regenerating system. The energy derived from the me...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)81273-o

    authors: de Meis L,Grieco MA,Galina A

    更新日期:1992-08-17 00:00:00

  • Investigating the nucleic acid interactions of histone-derived antimicrobial peptides.

    abstract::While many antimicrobial peptides (AMPs) disrupt bacterial membranes, some translocate into bacteria and interfere with intracellular processes. Buforin II and DesHDAP1 are thought to kill bacteria by interacting with nucleic acids. Here, molecular modeling and experimental measurements are used to show that neither n...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12574

    authors: Sim S,Wang P,Beyer BN,Cutrona KJ,Radhakrishnan ML,Elmore DE

    更新日期:2017-03-01 00:00:00

  • Spectral imaging and linear un-mixing enables improved FRET efficiency with a novel GFP2-YFP FRET pair.

    abstract::Spectral variants of the green fluorescent protein (GFP) have been extensively used as reporters to image molecular interactions in living cells by fluorescence resonance energy transfer (FRET). However, those GFP variants which are the most efficient donor acceptor pairs for FRET measurements show a high degree of sp...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(02)03508-1

    authors: Zimmermann T,Rietdorf J,Girod A,Georget V,Pepperkok R

    更新日期:2002-11-06 00:00:00

  • Synthesis and biological characterization of monocyte-derived neutrophil chemotactic factor.

    abstract::MDNCF is a human monocyte-derived, 72-residue chemotactic peptide, which has sequence similarity with members of a family of pro-inflammatory cytokines. The peptide was synthesized by the solid-phase method, and is identical to the natural peptide in amino acid composition, sequence and chemotactic potency. MDNCF form...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(88)80078-4

    authors: Tanaka S,Robinson EA,Yoshimura T,Matsushima K,Leonard EJ,Appella E

    更新日期:1988-08-29 00:00:00

  • Cooperativity between platelet-activating factor and collagen in aggregation of bovine platelets III.

    abstract::In cooperative aggregation of bovine platelets induced by simultaneous addition of PAF and collagen at subthreshold concentrations the following observations were made. (i) Formation of phosphatidic acid and arachidonic acid metabolites, which characterize PAF and collagen alone-induced aggregation, respectively, was ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(90)80930-h

    authors: Kojima S,Sekiya F,Inada Y,Sato F,Tsukada T,Saito Y

    更新日期:1990-07-16 00:00:00

  • γ-Glutamyl kinase is involved in selective autophagy of ribosomes in Saccharomyces cerevisiae.

    abstract::γ-Glutamyl kinase (GK; the PRO1 gene product) is a key enzyme in the Saccharomyces cerevisiae proline biosynthesis pathway. Δpro1 cells are more sensitive to various stresses than wild-type cells, suggesting that GK has an alternative function independent of proline biosynthesis. We show that PRO1 genetically interact...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12318

    authors: Tatehashi Y,Watanabe D,Takagi H

    更新日期:2016-09-01 00:00:00

  • Octopus rhodopsin. Amino acid sequence deduced from cDNA.

    abstract::The primary structure of rhodopsin from the octopus Paroctopus defleini has been determined by parallel analysis of the protein and corresponding cDNA. The amino acid sequence is most similar to the recently cloned Drosophila opsins. Similarities to bovine and human opsins are also evident. The transmembrane topology ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(88)80388-0

    authors: Ovchinnikov YuA,Abdulaev NG,Zolotarev AS,Artamonov ID,Bespalov IA,Dergachev AE,Tsuda M

    更新日期:1988-05-09 00:00:00

  • Molecular cloning of a novel C or gamma type chemokine, SCM-1.

    abstract::From human PBMC stimulated with PHA, we have isolated cDNA clones encoding a novel cytokine named SCM-1, which is significantly related to the CC and the CXC chemokines but has only the 2nd and the 4th of the four cysteines conserved in these proteins. Its gene is also distinctly mapped to human chromosome 1. SCM-1 is...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(95)00093-o

    authors: Yoshida T,Imai T,Kakizaki M,Nishimura M,Yoshie O

    更新日期:1995-02-27 00:00:00

  • Crystallization and X-ray analysis of the reaction center from the thermophilic green bacterium Chloroflexus aurantiacus.

    abstract::The photochemical reaction center of Chloroflexus (Cf.) aurantiacus, a membrane bound pigment-protein complex, has been crystallized in the presence of monodisperse polyoxyethylene detergents. The crystals possessed a pronounced polymorphism. Three different crystal forms belonging to triclinic, monoclinic and orthorh...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)01101-5

    authors: Feick R,Ertlmaier A,Ermler U

    更新日期:1996-11-04 00:00:00

  • Augmentation of retinoic acid-induced granulocytic differentiation in HL-60 leukemia cells by serine/threonine protein phosphatase inhibitors.

    abstract::To evaluate the involvement of protein phosphatases (PP) in differentiation of human myelogenous leukemia HL-60 cells, we made use of potent inhibitors of PP1 and PP2A, calyculin-A (CAL-A) and okadaic acid (OKA). CAL-A and OKA could augment all-trans retinoic acid (ATRA)-induced granulocytic differentiation, whereas t...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)81501-c

    authors: Morita K,Nishikawa M,Kobayashi K,Deguchi K,Ito M,Nakano T,Shima H,Nagao M,Kuno T,Tanaka C

    更新日期:1992-12-21 00:00:00

  • Overexpression of transglutaminase 2 accelerates the erythroid differentiation of human chronic myelogenous leukemia K562 cell line through PI3K/Akt signaling pathway.

    abstract::Transglutaminase 2 (TG2) is a GTP-binding protein with transglutaminase activity. Despite advances in the characterization of TG2 functions and their impact on cellular processes, the role of TG2 in Human chronic myelogenous leukemia K562 cell line is still poorly understood. To understand the biological significance ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2004.10.031

    authors: Kang SK,Lee JY,Chung TW,Kim CH

    更新日期:2004-11-19 00:00:00

  • FANCD2 is a target for caspase 3 during DNA damage-induced apoptosis.

    abstract::The Fanconi anemia (FA) pathway, of which the FANCD2 protein is a key component, plays crucial roles in the maintenance of hematopoietic stem cells and suppression of carcinogenesis. However, the function of FANCD2 remains unclear. Here, we report that FANCD2 is a novel and specific substrate of caspase 3. Cleavage of...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2014.08.027

    authors: Sakai W,Sugasawa K

    更新日期:2014-10-16 00:00:00

  • Activation of NF-kappa B by ER stress requires both Ca2+ and reactive oxygen intermediates as messengers.

    abstract::The eukaryotic transcription factor NF-kappaB is activated by a large variety of stimuli. We have recently shown that ER stress, caused by an aberrant accumulation of membrane proteins within this organelle, also activates NF-kappaB. Here, we show that activation of NF-kappaB by ER stress requires an increase in the i...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00800-9

    authors: Pahl HL,Baeuerle PA

    更新日期:1996-08-26 00:00:00

  • No evidence for a forced-unfolding mechanism during ATP/GroES binding to substrate-bound GroEL: no observable protection of metastable Rubisco intermediate or GroEL-bound Rubisco from tritium exchange.

    abstract::In tritium-hydrogen exchange experiments, the large GroEL substrate Rubisco was unfolded and exchanged in urea/acid/tritiated water, then diluted into either protic buffer or protic buffer containing GroEL. The respective Rubisco metastable folding intermediate or Rubisco-GroEL binary complex was then separated from r...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2005.01.013

    authors: Park ES,Fenton WA,Horwich AL

    更新日期:2005-02-14 00:00:00

  • Dependence of rat liver CMP-N-acetylneuraminate:GM1 sialyltransferase (SAT IV) activity on the ceramide composition of GM1 ganglioside.

    abstract::The dependence of CMP-N-acetylneuraminate:GM1 sialyltransferase (SAT IV) activity of rat liver Golgi apparatus on GM1 ganglioside ceramide composition was evaluated. SAT IV activity was assayed on GM1 molecular species carrying homogeneous ceramide moieties containing long chain bases of different length (18 or 20 C a...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00262-1

    authors: Pitto M,Palestini P,Masserini M

    更新日期:1996-04-01 00:00:00

  • Converging antigenic structure of a recombinant viral peptide displayed on different frameworks of carrier proteins.

    abstract::A peptide reproducing the G-H loop amino acid sequence of foot-and-mouth disease virus VP1 protein was fused to the solvent-exposed C-terminus of the bacteriophage P22 tailspike protein [Carbonell and Villaverde (1996) Gene, in press], a homotrimeric polypeptide with a strong beta-helical structure. This fusion does n...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(96)01169-6

    authors: Carbonell X,Benito A,Villaverde A

    更新日期:1996-11-18 00:00:00

  • Phosphorylation and dephosphorylation of hormone-sensitive lipase. Interactions between the regulatory and basal phosphorylation sites.

    abstract::Phosphorylation of the basal site with glycogen synthase kinase-4 enhanced the rate of phosphorylation of the regulatory site by cyclic AMP-dependent protein kinase 1.7-fold. In contrast, the phosphorylation state of the regulatory site did not affect the rate of phosphorylation of the basal site with glycogen synthas...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(88)80390-9

    authors: Olsson H,Belfrage P

    更新日期:1988-05-09 00:00:00

  • Neurotrophin-7: a novel member of the neurotrophin family from the zebrafish.

    abstract::A novel member of the neurotrophin family, zebrafish neurotrophin-7 (zNT-7), was isolated from the zebrafish Danio rerio. The amino acid sequence of zNT-7 is more closely related to that of fish nerve growth factor (NGF) and neurotrophin-6 (NT-6) than to that of any other neurotrophin. zNT-7 is, however, equally relat...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)00192-6

    authors: Nilsson AS,Fainzilber M,Falck P,Ibáñez CF

    更新日期:1998-03-13 00:00:00

  • Glutamate uptake by cultured rat hepatocytes is mediated by hormonally inducible, sodium-dependent transport systems.

    abstract::Glutamate uptake by rat hepatocytes in primary monolayer culture was found to be mediated by a Na+-independent and by two Na+-dependent transport systems of high and low affinity. Inhibition studies with cysteate and other model amino acids rules out the participation of the neutral amino acid transport systems A, ASC...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(83)81024-2

    authors: Gebhardt R,Mecke D

    更新日期:1983-09-19 00:00:00

  • Effects of acrolein, a natural occurring aldehyde, on the anticoagulant serpin antithrombin.

    abstract::We studied the effect of acrolein, an alpha,beta-unsaturated aldehyde that causes adduct-modification of lysine, cysteine, and histidine residues, on antithrombin, a key anticoagulant serpin. Intrinsic fluorescence, functionality (anti-FXa and anti-IIa activity), heparin affinity and conformational features of plasma ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2009.07.062

    authors: Martínez-Martínez I,Ordóñez A,Guerrero JA,Pedersen S,Miñano A,Teruel R,Velázquez L,Kristensen SR,Vicente V,Corral J

    更新日期:2009-10-06 00:00:00

  • A C-terminal proline is required for bioluminescence of the Ca(2+)-binding photoprotein, aequorin.

    abstract::The requirement for a proline residue at the C-terminus of the Ca(2+)-binding photoprotein, aequorin, was investigated by measuring luminescence activities of a series of C-terminal deletion mutants, substitution mutants and an addition mutant. CD spectral measurements of apoaequorin with the C-terminal proline delete...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(91)81385-l

    authors: Nomura M,Inouye S,Ohmiya Y,Tsuji FI

    更新日期:1991-12-16 00:00:00

  • The sequence of the hemoregulatory peptide is present in Gi alpha proteins.

    abstract::The hemoregulatory peptide PyroGlu-Glu-Asp-Cys-Lys (HP5b), which inhibits myelopoietic colony formation in vitro, is shown to be a sequence motif which is also part of the effector domain of Gi alpha proteins. Out of 8 synthetic peptides with sequence variations of HP5b, those with the closest similarity to the Gi alp...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(90)81106-x

    authors: Laerum OD,Frostad S,Tøn HI,Kamp D

    更新日期:1990-08-20 00:00:00

  • Interactome modeling.

    abstract::A long-term goal of the field of interactome modeling is to understand how global and local properties of complex macromolecular networks impact on observable biological properties, and how changes in such properties can lead to human diseases. The information available at this stage of development of the field provid...

    journal_title:FEBS letters

    pub_type: 杂志文章,评审

    doi:10.1016/j.febslet.2005.02.030

    authors: Vidal M

    更新日期:2005-03-21 00:00:00

  • Identification and functional analysis of novel phosphorylation sites in Cx43 in rat primary granulosa cells.

    abstract::The gap junctional intercellular communication mediated by Cx43 plays indispensable roles in both germ line development and postnatal folliculogenesis. In this study, we focused on the effect of follicle-stimulating hormone (FSH) on the Cx43 protein in rat primary granulosa cells and found that FSH stimulation elevate...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(02)03441-5

    authors: Yogo K,Ogawa T,Akiyama M,Ishida N,Takeya T

    更新日期:2002-11-06 00:00:00

  • Structure-activity relationship of alginate oligosaccharides in the induction of cytokine production from RAW264.7 cells.

    abstract::Guluronate and mannuronate oligomers with various degree of polymerization were prepared from polyguluronate (PG) and polymannuronate (PM) with an alginate lyase from a Pseudoalteromonas sp., and their activities to induce cytokine secretion from mouse macrophage cell line RAW264.7 cells were examined. Enzymatically d...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2005.07.007

    authors: Iwamoto M,Kurachi M,Nakashima T,Kim D,Yamaguchi K,Oda T,Iwamoto Y,Muramatsu T

    更新日期:2005-08-15 00:00:00

  • Structure of the large ribosomal subunit RNA of Phytophthora megasperma, and phylogeny of the oomycetes.

    abstract::The 5.8S and 28S rRNA sequences of the oomycete Phytophthora megasperma were determined in order to study the secondary structure of these molecules and to assess the phylogenetic position of the oomycetes among the eukaryotes. Preliminary results point to an affiliation between the oomycetes, dinoflagellates and cili...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)80350-1

    authors: Van der Auwera G,Chapelle S,De Wachter R

    更新日期:1994-01-31 00:00:00

  • SKK4, a novel activator of stress-activated protein kinase-1 (SAPK1/JNK).

    abstract::A cDNA was cloned and expressed that encodes human stress-activated protein kinase kinase-4 (SKK4), a novel MAP kinase kinase family member whose mRNA is widely expressed in human tissues. SKK4 activated SAPK1/JNK in vitro, but not SAPK2a/p38, SAPK2b/p38beta, SAPK3/ERK6 or SAPK4. It appears to be the mammalian homolog...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(97)00990-3

    authors: Lawler S,Cuenda A,Goedert M,Cohen P

    更新日期:1997-09-01 00:00:00

  • Modification of serine 392 is a critical event in the regulation of p53 nuclear export and stability.

    abstract::Although it has been shown that phosphorylations of p53 serine its residues are critical events for the regulation of their function, the specific biological effects of each of these phosphorylations, especially at serine 392, remain to be elucidated. Serine 392 has been proposed to play a role in the tetramerization ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2004.07.014

    authors: Kim YY,Park BJ,Kim DJ,Kim WH,Kim S,Oh KS,Lim JY,Kim J,Park C,Park SI

    更新日期:2004-08-13 00:00:00

  • The rat beta 3-adrenergic receptor gene contains an intron.

    abstract::We report that the rat beta 3-adrenergic receptor (beta 3-AR) gene has an intron. The intron starts with an in-frame stop codon with the result that unspliced transcripts will encode a C-terminal truncated protein. The reported protein sequences of mouse and human beta 3-AR were both deduced from genomic DNA sequences...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(93)80516-w

    authors: Bensaid M,Kaghad M,Rodriguez M,Le Fur G,Caput D

    更新日期:1993-03-08 00:00:00