Evolution and metabolic significance of the urea cycle in photosynthetic diatoms.

Abstract:

:Diatoms dominate the biomass of phytoplankton in nutrient-rich conditions and form the basis of some of the world's most productive marine food webs. The diatom nuclear genome contains genes with bacterial and plastid origins as well as genes of the secondary endosymbiotic host (the exosymbiont), yet little is known about the relative contribution of each gene group to diatom metabolism. Here we show that the exosymbiont-derived ornithine-urea cycle, which is similar to that of metazoans but is absent in green algae and plants, facilitates rapid recovery from prolonged nitrogen limitation. RNA-interference-mediated knockdown of a mitochondrial carbamoyl phosphate synthase impairs the response of nitrogen-limited diatoms to nitrogen addition. Metabolomic analyses indicate that intermediates in the ornithine-urea cycle are particularly depleted and that both the tricarboxylic acid cycle and the glutamine synthetase/glutamate synthase cycles are linked directly with the ornithine-urea cycle. Several other depleted metabolites are generated from ornithine-urea cycle intermediates by the products of genes laterally acquired from bacteria. This metabolic coupling of bacterial- and exosymbiont-derived proteins seems to be fundamental to diatom physiology because the compounds affected include the major diatom osmolyte proline and the precursors for long-chain polyamines required for silica precipitation during cell wall formation. So far, the ornithine-urea cycle is only known for its essential role in the removal of fixed nitrogen in metazoans. In diatoms, this cycle serves as a distribution and repackaging hub for inorganic carbon and nitrogen and contributes significantly to the metabolic response of diatoms to episodic nitrogen availability. The diatom ornithine-urea cycle therefore represents a key pathway for anaplerotic carbon fixation into nitrogenous compounds that are essential for diatom growth and for the contribution of diatoms to marine productivity.

journal_name

Nature

journal_title

Nature

authors

Allen AE,Dupont CL,Oborník M,Horák A,Nunes-Nesi A,McCrow JP,Zheng H,Johnson DA,Hu H,Fernie AR,Bowler C

doi

10.1038/nature10074

subject

Has Abstract

pub_date

2011-05-12 00:00:00

pages

203-7

issue

7346

eissn

0028-0836

issn

1476-4687

pii

nature10074

journal_volume

473

pub_type

杂志文章

相关文献

NATURE文献大全
  • Structural invariants in protein folding.

    abstract::An analysis of 15 protein structures indicates: First, the loss of accessible surface area by monomeric proteins on folding-proportional to hydrophobic energy-is a simple function of molecular weight; second, the proportion of polar groups forming intramolecular hydrogen bonds is constant; and third, protein interiors...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/254304a0

    authors: Chothia C

    更新日期:1975-03-27 00:00:00

  • The diurnal cycle of water ice on comet 67P/Churyumov-Gerasimenko.

    abstract::Observations of cometary nuclei have revealed a very limited amount of surface water ice, which is insufficient to explain the observed water outgassing. This was clearly demonstrated on comet 9P/Tempel 1, where the dust jets (driven by volatiles) were only partially correlated with the exposed ice regions. The observ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature14869

    authors: De Sanctis MC,Capaccioni F,Ciarniello M,Filacchione G,Formisano M,Mottola S,Raponi A,Tosi F,Bockelée-Morvan D,Erard S,Leyrat C,Schmitt B,Ammannito E,Arnold G,Barucci MA,Combi M,Capria MT,Cerroni P,Ip WH,Kuehrt E,M

    更新日期:2015-09-24 00:00:00

  • The 'far east' of biological ethics.

    abstract::The ethics of biological research, and its general impact, are hotly debated in the West. Japanese silence on the issues is counterproductive. Will the Human Genome Project provide the catalyst for change? ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/359770a0

    authors: Macer D

    更新日期:1992-10-29 00:00:00

  • The neurotrophic factor receptor RET drives haematopoietic stem cell survival and function.

    abstract::Haematopoiesis is a developmental cascade that generates all blood cell lineages in health and disease. This process relies on quiescent haematopoietic stem cells capable of differentiating, self renewing and expanding upon physiological demand. However, the mechanisms that regulate haematopoietic stem cell homeostasi...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13498

    authors: Fonseca-Pereira D,Arroz-Madeira S,Rodrigues-Campos M,Barbosa IA,Domingues RG,Bento T,Almeida AR,Ribeiro H,Potocnik AJ,Enomoto H,Veiga-Fernandes H

    更新日期:2014-10-02 00:00:00

  • Author Correction: SLC19A1 transports immunoreactive cyclic dinucleotides.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41586-020-2064-8

    authors: Luteijn RD,Zaver SA,Gowen BG,Wyman SK,Garelis NE,Onia L,McWhirter SM,Katibah GE,Corn JE,Woodward JJ,Raulet DH

    更新日期:2020-03-01 00:00:00

  • Analysis of gain-of-function mutations of the lin-12 gene of Caenorhabditis elegans.

    abstract::Certain cell fate decisions are specified by cell-cell interactions during the development of the nematode Caenorhabditis elegans. For example, in a wild-type hermaphrodite gonad, two cells, Z1.ppp and Z4.aaa, have the potential to become the anchor cell (AC). Intercellular communication establishes their fates and en...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/346197a0

    authors: Greenwald I,Seydoux G

    更新日期:1990-07-12 00:00:00

  • Detection of large-scale X-ray bubbles in the Milky Way halo.

    abstract::The halo of the Milky Way provides a laboratory to study the properties of the shocked hot gas that is predicted by models of galaxy formation. There is observational evidence of energy injection into the halo from past activity in the nucleus of the Milky Way1-4; however, the origin of this energy (star formation or ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2979-0

    authors: Predehl P,Sunyaev RA,Becker W,Brunner H,Burenin R,Bykov A,Cherepashchuk A,Chugai N,Churazov E,Doroshenko V,Eismont N,Freyberg M,Gilfanov M,Haberl F,Khabibullin I,Krivonos R,Maitra C,Medvedev P,Merloni A,Nandra K,N

    更新日期:2020-12-01 00:00:00

  • Retardation of arsenic transport through a Pleistocene aquifer.

    abstract::Groundwater drawn daily from shallow alluvial sands by millions of wells over large areas of south and southeast Asia exposes an estimated population of over a hundred million people to toxic levels of arsenic. Holocene aquifers are the source of widespread arsenic poisoning across the region. In contrast, Pleistocene...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12444

    authors: van Geen A,Bostick BC,Pham TK,Vi ML,Nguyen-Ngoc M,Phu DM,Pham HV,Radloff K,Aziz Z,Mey JL,Stahl MO,Harvey CF,Oates P,Weinman B,Stengel C,Frei F,Kipfer R,Berg M

    更新日期:2013-09-12 00:00:00

  • Interacting Floquet polaritons.

    abstract::Ordinarily, photons do not interact with one another. However, atoms can be used to mediate photonic interactions1,2, raising the prospect of forming synthetic materials3 and quantum information systems4-7 from photons. One promising approach combines highly excited Rydberg atoms8-12 with the enhanced light-matter cou...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1354-5

    authors: Clark LW,Jia N,Schine N,Baum C,Georgakopoulos A,Simon J

    更新日期:2019-07-01 00:00:00

  • Duplications of a mutated simian virus 40 enhancer restore its activity.

    abstract::Enhancers are cis-acting control elements which can stimulate at a distance the activity of a variety of eukaryotic promoters. First identified as a repeated 72 base pair (bp) sequence upstream of the simian virus 40 (SV40) early gene promoter, enhancers have since been shown to be associated with numerous other viral...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/313711a0

    authors: Herr W,Gluzman Y

    更新日期:1985-02-21 00:00:00

  • T-cell recognition of antigen and the Ia molecule as a ternary complex.

    abstract::T-lymphocyte co-recognition of antigen and major histocompatibility complex (MHC)-encoded molecules (such as murine Ia molecules) is thought to be mediated by a single cell-surface receptor, although the molecular mechanism by which this occurs is controversial (reviewed in ref. 1). One possibility is that the antigen...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/320176a0

    authors: Ashwell JD,Schwartz RH

    更新日期:1986-03-13 00:00:00

  • Cyclopia and defective axial patterning in mice lacking Sonic hedgehog gene function.

    abstract::Targeted gene disruption in the mouse shows that the Sonic hedgehog (Shh) gene plays a critical role in patterning of vertebrate embryonic tissues, including the brain and spinal cord, the axial skeleton and the limbs. Early defects are observed in the establishment or maintenance of midline structures, such as the no...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/383407a0

    authors: Chiang C,Litingtung Y,Lee E,Young KE,Corden JL,Westphal H,Beachy PA

    更新日期:1996-10-03 00:00:00

  • Organization and functions of mGlu and GABAB receptor complexes.

    abstract::The neurotransmitters glutamate and γ-aminobutyric acid (GABA) transmit synaptic signals by activating fast-acting ligand-gated ion channels and more slowly acting G-protein-coupled receptors (GPCRs). The GPCRs for these neurotransmitters, metabotropic glutamate (mGlu) and GABAB receptors, are atypical GPCRs with a la...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature20566

    authors: Pin JP,Bettler B

    更新日期:2016-12-01 00:00:00

  • Long-range correlations in nucleotide sequences.

    abstract::DNA sequences have been analysed using models, such as an n-step Markov chain, that incorporate the possibility of short-range nucleotide correlations. We propose here a method for studying the stochastic properties of nucleotide sequences by constructing a 1:1 map of the nucleotide sequence onto a walk, which we term...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/356168a0

    authors: Peng CK,Buldyrev SV,Goldberger AL,Havlin S,Sciortino F,Simons M,Stanley HE

    更新日期:1992-03-12 00:00:00

  • Comparative assessment of large-scale data sets of protein-protein interactions.

    abstract::Comprehensive protein protein interaction maps promise to reveal many aspects of the complex regulatory network underlying cellular function. Recently, large-scale approaches have predicted many new protein interactions in yeast. To measure their accuracy and potential as well as to identify biases, strengths and weak...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature750

    authors: von Mering C,Krause R,Snel B,Cornell M,Oliver SG,Fields S,Bork P

    更新日期:2002-05-23 00:00:00

  • Differentiating germ cells can revert into functional stem cells in Drosophila melanogaster ovaries.

    abstract::Many tissues including blood, skin, gut and germ cells are continuously maintained by tissue stem cells. Under certain conditions, however, other organs can undergo repair using stem-cell-like progenitors generated by cell de-differentiation. Cell fates have been broadened experimentally, but mechanisms allowing de-di...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02436

    authors: Kai T,Spradling A

    更新日期:2004-04-01 00:00:00

  • Angiogenesis in life, disease and medicine.

    abstract::The growth of blood vessels (a process known as angiogenesis) is essential for organ growth and repair. An imbalance in this process contributes to numerous malignant, inflammatory, ischaemic, infectious and immune disorders. Recently, the first anti-angiogenic agents have been approved for the treatment of cancer and...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature04478

    authors: Carmeliet P

    更新日期:2005-12-15 00:00:00

  • Sensory pollutants alter bird phenology and fitness across a continent.

    abstract::Expansion of anthropogenic noise and night lighting across our planet1,2 is of increasing conservation concern3-6. Despite growing knowledge of physiological and behavioural responses to these stimuli from single-species and local-scale studies, whether these pollutants affect fitness is less clear, as is how and why ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2903-7

    authors: Senzaki M,Barber JR,Phillips JN,Carter NH,Cooper CB,Ditmer MA,Fristrup KM,McClure CJW,Mennitt DJ,Tyrrell LP,Vukomanovic J,Wilson AA,Francis CD

    更新日期:2020-11-01 00:00:00

  • Free choice activates a decision circuit between frontal and parietal cortex.

    abstract::We often face alternatives that we are free to choose between. Planning movements to select an alternative involves several areas in frontal and parietal cortex that are anatomically connected into long-range circuits. These areas must coordinate their activity to select a common movement goal, but how neural circuits...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature06849

    authors: Pesaran B,Nelson MJ,Andersen RA

    更新日期:2008-05-15 00:00:00

  • The environment: what's in a word?

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07463-1

    authors: Lewis-Jones H

    更新日期:2018-11-01 00:00:00

  • DNA interrogation by the CRISPR RNA-guided endonuclease Cas9.

    abstract::The clustered regularly interspaced short palindromic repeats (CRISPR)-associated enzyme Cas9 is an RNA-guided endonuclease that uses RNA-DNA base-pairing to target foreign DNA in bacteria. Cas9-guide RNA complexes are also effective genome engineering agents in animals and plants. Here we use single-molecule and bulk...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13011

    authors: Sternberg SH,Redding S,Jinek M,Greene EC,Doudna JA

    更新日期:2014-03-06 00:00:00

  • The pectoral fin of Tiktaalik roseae and the origin of the tetrapod limb.

    abstract::Wrists, ankles and digits distinguish tetrapod limbs from fins, but direct evidence on the origin of these features has been unavailable. Here we describe the pectoral appendage of a member of the sister group of tetrapods, Tiktaalik roseae, which is morphologically and functionally transitional between a fin and a li...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature04637

    authors: Shubin NH,Daeschler EB,Jenkins FA Jr

    更新日期:2006-04-06 00:00:00

  • Maternal mRNA deadenylation and decay by the piRNA pathway in the early Drosophila embryo.

    abstract::Piwi-associated RNAs (piRNAs), a specific class of 24- to 30-nucleotide-long RNAs produced by the Piwi-type of Argonaute proteins, have a specific germline function in repressing transposable elements. This repression is thought to involve heterochromatin formation and transcriptional and post-transcriptional silencin...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature09465

    authors: Rouget C,Papin C,Boureux A,Meunier AC,Franco B,Robine N,Lai EC,Pelisson A,Simonelig M

    更新日期:2010-10-28 00:00:00

  • Sensitivity of coccolithophores to carbonate chemistry and ocean acidification.

    abstract::About one-third of the carbon dioxide (CO(2)) released into the atmosphere as a result of human activity has been absorbed by the oceans, where it partitions into the constituent ions of carbonic acid. This leads to ocean acidification, one of the major threats to marine ecosystems and particularly to calcifying organ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10295

    authors: Beaufort L,Probert I,de Garidel-Thoron T,Bendif EM,Ruiz-Pino D,Metzl N,Goyet C,Buchet N,Coupel P,Grelaud M,Rost B,Rickaby RE,de Vargas C

    更新日期:2011-08-03 00:00:00

  • Control of the sperm-oocyte switch in Caenorhabditis elegans hermaphrodites by the fem-3 3' untranslated region.

    abstract::In the Caenorhabditis elegans hermaphrodite germ line, sperm and then oocytes are made from a common pool of germ-cell precursors. The decision to differentiate as a sperm or an oocyte is regulated by the sex-determining gene, fem-3. Expression of fem-3 in the hermaphrodite germ line directs spermatogenesis and must b...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/349346a0

    authors: Ahringer J,Kimble J

    更新日期:1991-01-24 00:00:00

  • The consequences of imperfect mixing in autocatalytic chemical and biological systems.

    abstract::When chemical reactions whose rate increases with the concentration of a product species are carried out in imperfectly mixed systems, a variety of complex behaviours can occur. These phenomena, which have relevance for biological processes as well, include chaotic and stochastic behaviour and selection of one final s...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/374321a0

    authors: Epstein IR

    更新日期:1995-03-23 00:00:00

  • A network-based analysis of systemic inflammation in humans.

    abstract::Oligonucleotide and complementary DNA microarrays are being used to subclassify histologically similar tumours, monitor disease progress, and individualize treatment regimens. However, extracting new biological insight from high-throughput genomic studies of human diseases is a challenge, limited by difficulties in re...

    journal_title:Nature

    pub_type: 临床试验,杂志文章

    doi:10.1038/nature03985

    authors: Calvano SE,Xiao W,Richards DR,Felciano RM,Baker HV,Cho RJ,Chen RO,Brownstein BH,Cobb JP,Tschoeke SK,Miller-Graziano C,Moldawer LL,Mindrinos MN,Davis RW,Tompkins RG,Lowry SF,Inflamm and Host Response to Injury Large Scale

    更新日期:2005-10-13 00:00:00

  • Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis.

    abstract::A major component of the large genomes of higher plants and vertebrates comprises transposable elements and their derivatives, which potentially reduce the stability of the genome. It has been proposed that methylation of cytosine residues may suppress transposition, but experimental evidence for this has been limited...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35075612

    authors: Miura A,Yonebayashi S,Watanabe K,Toyama T,Shimada H,Kakutani T

    更新日期:2001-05-10 00:00:00

  • Communications: quantum teleportation across the Danube.

    abstract::Efficient long-distance quantum teleportation is crucial for quantum communication and quantum networking schemes. Here we describe the high-fidelity teleportation of photons over a distance of 600 metres across the River Danube in Vienna, with the optimal efficiency that can be achieved using linear optics. Our resul...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/430849a

    authors: Ursin R,Jennewein T,Aspelmeyer M,Kaltenbaek R,Lindenthal M,Walther P,Zeilinger A

    更新日期:2004-08-19 00:00:00

  • Evolutionary genetics: Ambiguous role of CCR5 in Y. pestis infection.

    abstract::Mecsas and colleagues suggest that a deficiency in the chemokine receptor CCR5 in humans is unlikely to confer protection against plague, based on their study of Yersinia pestis infection in Ccr5-deficient mice. They were testing the hypothesis that a mutation in the CCR5 gene, frequently found in Caucasians, may have...

    journal_title:Nature

    pub_type: 评论,杂志文章

    doi:10.1038/nature02822

    authors: Elvin SJ,Williamson ED,Scott JC,Smith JN,Pérez De Lema G,Chilla S,Clapham P,Pfeffer K,Schlöndorff D,Luckow B

    更新日期:2004-07-22 00:00:00