Producing nature's gene-chips: the generation of peptides for display by MHC class I molecules.

Abstract:

:Gene-chips contain thousands of nucleotide sequences that allow simultaneous analysis of the complex mixture of RNAs transcribed in cells. Like these gene-chips, major histocompatibility complex (MHC) class I molecules display a large array of peptides on the cell surface for probing by the CD8(+) T cell repertoire. The peptide mixture represents fragments of most, if not all, intracellular proteins. The antigen processing machinery accomplishes the daunting task of sampling these proteins and cleaving them into the precise set of peptides displayed by MHC I molecules. It has long been believed that antigenic peptides arose as by-products of normal protein turnover. Recent evidence, however, suggests that the primary source of peptides is newly synthesized proteins that arise from conventional as well as cryptic translational reading frames. It is increasingly clear that for many peptides the C-terminus is generated in the cytoplasm, and N-terminal trimming occurs in the endoplasmic reticulum in an MHC I-dependent manner. Nature's gene-chips are thus both parsimonious and elegant.

journal_name

Annu Rev Immunol

authors

Shastri N,Schwab S,Serwold T

doi

10.1146/annurev.immunol.20.100301.064819

subject

Has Abstract

pub_date

2002-01-01 00:00:00

pages

463-93

eissn

0732-0582

issn

1545-3278

pii

100301.064819

journal_volume

20

pub_type

杂志文章
  • The role of ThPOK in control of CD4/CD8 lineage commitment.

    abstract::During alphabeta T cell development, cells diverge into alternate CD4 helper and CD8(+) cytotoxic T cell lineages. The precise correlation between a T cell's CD8 and CD4 choice and its TCR specificity to class I or class II MHC was noted more than 20 years ago, and establishing the underlying mechanism has remained a ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.25.022106.141715

    authors: He X,Park K,Kappes DJ

    更新日期:2010-01-01 00:00:00

  • [gamma][delta] cells: a right time and a right place for a conserved third way of protection.

    abstract::The tripartite subdivision of lymphocytes into B cells, alphabeta T cells, and gammadelta cells has been conserved seemingly since the emergence of jawed vertebrates, more than 450 million years ago. Yet, while we understand much about B cells and alphabeta T cells, we lack a compelling explanation for the evolutionar...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.18.1.975

    authors: Hayday AC

    更新日期:2000-01-01 00:00:00

  • Natural suppressor (NS) cells, neonatal tolerance, and total lymphoid irradiation: exploring obscure relationships.

    abstract::Although several laboratories have shown that the appearance of naturally occurring suppressor cells in the spleens of neonatal or irradiated mice is temporarily related to the ease of induction of tolerance, the characteristics of these cells and their regulatory functions have been poorly understood until recently. ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.02.040184.001251

    authors: Strober S

    更新日期:1984-01-01 00:00:00

  • The Microbiome and Food Allergy.

    abstract::The gut-associated lymphoid tissue (GALT) faces a considerable challenge. It encounters antigens derived from an estimated 1014 commensal microbes and greater than 30 kg of food proteins yearly. It must distinguish these harmless antigens from potential pathogens and mount the appropriate host immune response. Local a...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-042718-041621

    authors: Iweala OI,Nagler CR

    更新日期:2019-04-26 00:00:00

  • The bare lymphocyte syndrome and the regulation of MHC expression.

    abstract::The bare lymphocyte syndrome (BLS) is a hereditary immunodeficiency resulting from the absence of major histocompatibility complex class II (MHCII) expression. Considering the central role of MHCII molecules in the development and activation of CD4(+) T cells, it is not surprising that the immune system of the patient...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.19.1.331

    authors: Reith W,Mach B

    更新日期:2001-01-01 00:00:00

  • MHC class-I transgenic mice.

    abstract::The introduction of cloned genes into the germline of mice has been proven to be a powerful tool to investigate the role of the respective gene products within the immune system. Here we summarize the transgenic mouse models that have been established with major histocompatibility complex (MHC) class-I genes. Foreign ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.09.040191.001501

    authors: Arnold B,Hämmerling GJ

    更新日期:1991-01-01 00:00:00

  • Chemokines and chemokine receptors: positioning cells for host defense and immunity.

    abstract::Chemokines are chemotactic cytokines that control the migratory patterns and positioning of all immune cells. Although chemokines were initially appreciated as important mediators of acute inflammation, we now know that this complex system of approximately 50 endogenous chemokine ligands and 20 G protein-coupled seven...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-032713-120145

    authors: Griffith JW,Sokol CL,Luster AD

    更新日期:2014-01-01 00:00:00

  • A central role for central tolerance.

    abstract::Recent elucidation of the role of central tolerance in preventing organ-specific autoimmunity has changed our concepts of self/nonself discrimination. This paradigmatic shift is largely attributable to the discovery of promiscuous expression of tissue-restricted self-antigens (TRAs) by medullary thymic epithelial cell...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.23.021704.115601

    authors: Kyewski B,Klein L

    更新日期:2006-01-01 00:00:00

  • Ligand recognition by alpha beta T cell receptors.

    abstract::While still incomplete, the first data concerning the biochemistry of T cell receptor-ligand interactions in cell-free systems seem to have considerable predictive value regarding whether a T cell response is strong or weak or suppressive. This data will help considerably in elucidating the mechanisms behind T cell re...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.16.1.523

    authors: Davis MM,Boniface JJ,Reich Z,Lyons D,Hampl J,Arden B,Chien Y

    更新日期:1998-01-01 00:00:00

  • On natural and artificial vaccinations.

    abstract::This review summarizes the general parameters of cell- and antibody-mediated immune protection and the basic mechanisms responsible for what we call immunological memory. From this basis, the various successes and difficulties of vaccines are evaluated with respect to the role of antigen in maintaining protective immu...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.21.120601.141045

    authors: Zinkernagel RM

    更新日期:2003-01-01 00:00:00

  • Chromatin-Modifying Enzymes in T Cell Development.

    abstract::T cell development involves stepwise progression through defined stages that give rise to multiple T cell subtypes, and this is accompanied by the establishment of stage-specific gene expression. Changes in chromatin accessibility and chromatin modifications accompany changes in gene expression during T cell developme...

    journal_title:Annual review of immunology

    pub_type: 杂志文章

    doi:10.1146/annurev-immunol-092719-082622

    authors: Shapiro MJ,Shapiro VS

    更新日期:2020-04-26 00:00:00

  • Immune responses in MHC class II-deficient mice.

    abstract::Major histocompatibility complex (MHC) class II molecules are heterodimeric cell surface proteins that are critically important for the development and function of cells in the immune system. In particular, the maturation of CD4+ T cells is dependent on the expression of MHC class II molecules on thymic epithelium, wh...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.13.040195.002221

    authors: Grusby MJ,Glimcher LH

    更新日期:1995-01-01 00:00:00

  • Cellular basis of skin allograft rejection: an in vivo model of immune-mediated tissue destruction.

    abstract::Rejection of transplanted tissue allografts results from T-cell recognition of histocompatibility antigens expressed by cells of the donor graft. This review focuses on the phenotype, specificity, and function of the T cells mediating rejection responses against skin allografts, and on the immune mechanisms by which h...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.10.040192.002001

    authors: Rosenberg AS,Singer A

    更新日期:1992-01-01 00:00:00

  • Hypoxia and Innate Immunity: Keeping Up with the HIFsters.

    abstract::Recent years have witnessed an emergence of interest in understanding metabolic changes associated with immune responses, termed immunometabolism. As oxygen is central to all aerobic metabolism, hypoxia is now recognized to contribute fundamentally to inflammatory and immune responses. Studies from a number of groups ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章

    doi:10.1146/annurev-immunol-100819-121537

    authors: Colgan SP,Furuta GT,Taylor CT

    更新日期:2020-04-26 00:00:00

  • Regulation of T cell fate by Notch.

    abstract::The transmembrane receptor Notch participates in diverse cell fate decisions throughout embryonic development. Notch receptors and their ligands are expressed in the mammalian thymus, raising the possibility that Notch could regulate T cell fate decisions. Expression of a constitutively activated form of Notch in deve...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.17.1.283

    authors: Robey E

    更新日期:1999-01-01 00:00:00

  • The Innate Lymphoid Cell Precursor.

    abstract::The discovery of tissue-resident innate lymphoid cell populations effecting different forms of type 1, 2, and 3 immunity; tissue repair; and immune regulation has transformed our understanding of mucosal immunity and allergy. The emerging complexity of these populations along with compounding issues of redundancy and ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-041015-055549

    authors: Ishizuka IE,Constantinides MG,Gudjonson H,Bendelac A

    更新日期:2016-05-20 00:00:00

  • Microbiota-mediated inflammation and antimicrobial defense in the intestine.

    abstract::The diverse microbial populations constituting the intestinal microbiota promote immune development and differentiation, but because of their complex metabolic requirements and the consequent difficulty culturing them, they remained, until recently, largely uncharacterized and mysterious. In the last decade, deep nucl...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-032713-120238

    authors: Caballero S,Pamer EG

    更新日期:2015-01-01 00:00:00

  • Neuroendocrine regulation of immunity.

    abstract::A reciprocal regulation exists between the central nervous and immune systems through which the CNS signals the immune system via hormonal and neuronal pathways and the immune system signals the CNS through cytokines. The primary hormonal pathway by which the CNS regulates the immune system is the hypothalamic-pituita...

    journal_title:Annual review of immunology

    pub_type: 杂志文章

    doi:10.1146/annurev.immunol.20.082401.104914

    authors: Webster JI,Tonelli L,Sternberg EM

    更新日期:2002-01-01 00:00:00

  • A life of adventure in immunobiology.

    abstract::This article outlines my early start in medicine, a late start in immunology research, and my efforts to integrate the two activities. I first describe some of the background information, excitement, and implications of the recognition of T and B cells as separate but functionally intertwined arms of the adaptive immu...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-030409-101248

    authors: Cooper MD

    更新日期:2010-01-01 00:00:00

  • How neutrophils kill microbes.

    abstract::Neutrophils provide the first line of defense of the innate immune system by phagocytosing, killing, and digesting bacteria and fungi. Killing was previously believed to be accomplished by oxygen free radicals and other reactive oxygen species generated by the NADPH oxidase, and by oxidized halides produced by myelope...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.23.021704.115653

    authors: Segal AW

    更新日期:2005-01-01 00:00:00

  • Molecular interactions mediating T cell antigen recognition.

    abstract::Over the past decade, key protein interactions contributing to T cell antigen recognition have been characterized in molecular detail. These have included interactions involving the T cell antigen receptor (TCR) itself, its coreceptors CD4 and CD8, the accessory molecule CD2, and the costimulatory receptors CD28 and C...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.21.120601.141036

    authors: van der Merwe PA,Davis SJ

    更新日期:2003-01-01 00:00:00

  • Thymus independent T cell development and selection in the intestinal epithelium.

    abstract::The presence of intestinal intra-epithelial lymphocytes (IEL) has been appreciated for over 100 years. However, until recently, the IEL were thought to be simply another specialized component of the gut-associated lymphoid tissue (GALT), sharing the same origin as lymphocytes found in other GALT compartments such as t...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.12.040194.002513

    authors: Poussier P,Julius M

    更新日期:1994-01-01 00:00:00

  • The host defense of Drosophila melanogaster.

    abstract::To combat infection, the fruit fly Drosophila melanogaster relies on multiple innate defense reactions, many of which are shared with higher organisms. These reactions include the use of physical barriers together with local and systemic immune responses. First, epithelia, such as those beneath the cuticle, in the ali...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.25.022106.141615

    authors: Lemaitre B,Hoffmann J

    更新日期:2007-01-01 00:00:00

  • Receptor-dependent mechanisms of cell stimulation by bacterial endotoxin.

    abstract::In humans and experimental animals the presence of bacterial lipopolysaccharide (endotoxin, LPS) signals the presence of gram-negative bacteria. Recognition of LPS triggers gene induction by myeloid and nonmyeloid lineage cells. These inducible genes encode proteins that include cytokines, adhesive proteins, and enzym...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.13.040195.002253

    authors: Ulevitch RJ,Tobias PS

    更新日期:1995-01-01 00:00:00

  • Tolerance of infections.

    abstract::A host has two methods to defend against pathogens: It can clear the pathogens or reduce their impact on health in other ways. The first, resistance, is well studied. Study of the second, which ecologists call tolerance, is in its infancy. Tolerance measures the dose response curve of a host's health in reaction to a ...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-020711-075030

    authors: Ayres JS,Schneider DS

    更新日期:2012-01-01 00:00:00

  • Discovering the role of the major histocompatibility complex in the immune response.

    abstract::The discovery that genes in the major histocompatibility complex (MHC) play an important role in the immune response depended on the chance interaction of several unrelated events. The first, and most important, was the decision by Michael Sela to synthesize a series of branched, multichain, synthetic polypeptides bas...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.18.1.1

    authors: McDevitt HO

    更新日期:2000-01-01 00:00:00

  • Peptides naturally presented by MHC class I molecules.

    abstract::MHC class I molecules are peptide receptors of stringent specificity which however still allow millions of different ligands. This is achieved by the following specificity characteristics summarized as allele specific peptide motifs: Peptides are of defined length, depending on the class I allele (either 8 or 9 residu...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.11.040193.001241

    authors: Rammensee HG,Falk K,Rötzschke O

    更新日期:1993-01-01 00:00:00

  • Emerging Cellular Therapies for Cancer.

    abstract::Genetically engineered T cells are powerful new medicines, offering hope for curative responses in patients with cancer. Chimeric antigen receptor (CAR) T cells were recently approved by the US Food and Drug Administration and are poised to enter the practice of medicine for leukemia and lymphoma, demonstrating that e...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev-immunol-042718-041407

    authors: Guedan S,Ruella M,June CH

    更新日期:2019-04-26 00:00:00

  • Genetic control of autoimmune diabetes in the NOD mouse.

    abstract::The nonobese diabetic (NOD) mouse is a model of human autoimmune insulin-dependent diabetes mellitus. The NOD mouse also serves as a model for studying complex polygenic diseases because at least fourteen different loci are linked to disease development. The first Idd locus recognized, Idd1, is linked to the major his...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.iy.13.040195.001143

    authors: Wicker LS,Todd JA,Peterson LB

    更新日期:1995-01-01 00:00:00

  • Structure and function of natural killer cell receptors: multiple molecular solutions to self, nonself discrimination.

    abstract::In contrast to T cell receptors, signal transducing cell surface membrane molecules involved in the regulation of responses by cells of the innate immune system employ structures that are encoded in the genome rather than generated by somatic recombination and that recognize either classical MHC-I molecules or their s...

    journal_title:Annual review of immunology

    pub_type: 杂志文章,评审

    doi:10.1146/annurev.immunol.20.100301.064812

    authors: Natarajan K,Dimasi N,Wang J,Mariuzza RA,Margulies DH

    更新日期:2002-01-01 00:00:00