Structure and mechanism of a metal-sensing regulatory RNA.

Abstract:

:Organisms maintain the correct balance of intracellular metals primarily through metal-sensing proteins that control transport and storage of the target ion(s). Here, we reveal the basis of metal sensing and genetic control by a metalloregulatory RNA. Our data demonstrate that a previously uncharacterized orphan riboswitch, renamed the "M-box," is a divalent metal-sensing RNA involved in Mg(2+) homeostasis. A combination of genetic, biochemical, and biophysical techniques demonstrate that Mg(2+) induces a compacted tertiary architecture for M-box RNAs that regulates the accessibility of nucleotides involved in genetic control. Molecular details are provided by crystallographic structure determination of a Mg(2+)-bound M-box RNA. Given the distribution of this RNA element, it may constitute a common mode for bacterial metal ion regulation, and its discovery suggests the possibility of additional RNA-based metal sensors in modern and primordial organisms.

journal_name

Cell

journal_title

Cell

authors

Dann CE 3rd,Wakeman CA,Sieling CL,Baker SC,Irnov I,Winkler WC

doi

10.1016/j.cell.2007.06.051

subject

Has Abstract

pub_date

2007-09-07 00:00:00

pages

878-92

issue

5

eissn

0092-8674

issn

1097-4172

pii

S0092-8674(07)00901-4

journal_volume

130

pub_type

杂志文章

相关文献

CELL文献大全
  • Redox regulation of a protein tyrosine kinase in the endoplasmic reticulum.

    abstract::The subcellular localization of the mouse Ltk transmembrane protein tyrosine kinase was studied in transfected COS cells, a mature B lymphocyte line, and a low expressing transfected lymphocyte clone. Indirect immunofluorescence and immunogold staining of COS transfectants and endoglycosidase analysis of both COS tran...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(91)90114-e

    authors: Bauskin AR,Alkalay I,Ben-Neriah Y

    更新日期:1991-08-23 00:00:00

  • Histone Acetylome-wide Association Study of Autism Spectrum Disorder.

    abstract::The association of histone modification changes with autism spectrum disorder (ASD) has not been systematically examined. We conducted a histone acetylome-wide association study (HAWAS) by performing H3K27ac chromatin immunoprecipitation sequencing (ChIP-seq) on 257 postmortem samples from ASD and matched control brai...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2016.10.031

    authors: Sun W,Poschmann J,Cruz-Herrera Del Rosario R,Parikshak NN,Hajan HS,Kumar V,Ramasamy R,Belgard TG,Elanggovan B,Wong CCY,Mill J,Geschwind DH,Prabhakar S

    更新日期:2016-11-17 00:00:00

  • Active Yeast Telomerase Shares Subunits with Ribonucleoproteins RNase P and RNase MRP.

    abstract::Telomerase is the ribonucleoprotein enzyme that replenishes telomeric DNA and maintains genome integrity. Minimally, telomerase activity requires a templating RNA and a catalytic protein. Additional proteins are required for activity on telomeres in vivo. Here, we report that the Pop1, Pop6, and Pop7 proteins, known c...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2016.04.018

    authors: Lemieux B,Laterreur N,Perederina A,Noël JF,Dubois ML,Krasilnikov AS,Wellinger RJ

    更新日期:2016-05-19 00:00:00

  • Mapping human epigenomes.

    abstract::As the second dimension to the genome, the epigenome contains key information specific to every type of cells. Thousands of human epigenome maps have been produced in recent years thanks to rapid development of high throughput epigenome mapping technologies. In this review, we discuss the current epigenome mapping too...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/j.cell.2013.09.011

    authors: Rivera CM,Ren B

    更新日期:2013-09-26 00:00:00

  • Fetal anemia and apoptosis of red cell progenitors in Stat5a-/-5b-/- mice: a direct role for Stat5 in Bcl-X(L) induction.

    abstract::The erythropoietin receptor (EpoR) is essential for production of red blood cells; a principal function of EpoR is to rescue committed erythroid progenitors from apoptosis. Stat5 is rapidly activated following EpoR stimulation, but its function in erythropoiesis has been unclear since adult Stat5a-/-5b-/- mice have no...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)81013-2

    authors: Socolovsky M,Fallon AE,Wang S,Brugnara C,Lodish HF

    更新日期:1999-07-23 00:00:00

  • The interaction of recombination proteins with supercoiled DNA: defining the role of supercoiling in lambda integrative recombination.

    abstract::Lambda integrative recombination depends on supercoiling of the phage attachment site, attP. Using dimethylsulfate protection and indirect end-labeling, the interaction of the recombination proteins Int and IHF with supercoiled and linear attP has been studied. Supercoiling enhances the binding of Int to attP, but not...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(86)90700-2

    authors: Richet E,Abcarian P,Nash HA

    更新日期:1986-09-26 00:00:00

  • Cancer-associated protein kinase C mutations reveal kinase's role as tumor suppressor.

    abstract::Protein kinase C (PKC) isozymes have remained elusive cancer targets despite the unambiguous tumor promoting function of their potent ligands, phorbol esters, and the prevalence of their mutations. We analyzed 8% of PKC mutations identified in human cancers and found that, surprisingly, most were loss of function and ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2015.01.001

    authors: Antal CE,Hudson AM,Kang E,Zanca C,Wirth C,Stephenson NL,Trotter EW,Gallegos LL,Miller CJ,Furnari FB,Hunter T,Brognard J,Newton AC

    更新日期:2015-01-29 00:00:00

  • Abate and switch: miR-145 in stem cell differentiation.

    abstract::MicroRNAs have been implicated as regulators of embryonic stem (ES) cell self-renewal and pluripotency. In this issue, Xu et al. (2009) demonstrate that miR-145 facilitates ES cell differentiation by repressing the core pluripotency factors OCT4, SOX2, and KLF4, thereby silencing the self-renewal program. ...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2009.04.059

    authors: Chivukula RR,Mendell JT

    更新日期:2009-05-15 00:00:00

  • Sequential E2s drive polyubiquitin chain assembly on APC targets.

    abstract::The anaphase-promoting complex (APC), or cyclosome, is an E3 ubiquitin-protein ligase that collaborates with E2 ubiquitin-conjugating enzymes to assemble polyubiquitin chains on proteins important for cell-cycle progression. It remains unclear how the APC - or many other E3s - promotes the multiple distinct reactions ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2007.05.027

    authors: Rodrigo-Brenni MC,Morgan DO

    更新日期:2007-07-13 00:00:00

  • Physiologic Medium Rewires Cellular Metabolism and Reveals Uric Acid as an Endogenous Inhibitor of UMP Synthase.

    abstract::A complex interplay of environmental factors impacts the metabolism of human cells, but neither traditional culture media nor mouse plasma mimic the metabolite composition of human plasma. Here, we developed a culture medium with polar metabolite concentrations comparable to those of human plasma (human plasma-like me...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2017.03.023

    authors: Cantor JR,Abu-Remaileh M,Kanarek N,Freinkman E,Gao X,Louissaint A Jr,Lewis CA,Sabatini DM

    更新日期:2017-04-06 00:00:00

  • Neuronal Dynamics Regulating Brain and Behavioral State Transitions.

    abstract::Prolonged behavioral challenges can cause animals to switch from active to passive coping strategies to manage effort-expenditure during stress; such normally adaptive behavioral state transitions can become maladaptive in psychiatric disorders such as depression. The underlying neuronal dynamics and brainwide interac...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2019.02.037

    authors: Andalman AS,Burns VM,Lovett-Barron M,Broxton M,Poole B,Yang SJ,Grosenick L,Lerner TN,Chen R,Benster T,Mourrain P,Levoy M,Rajan K,Deisseroth K

    更新日期:2019-05-02 00:00:00

  • Cell-Penetrating Peptide Mediates Intracellular Membrane Passage of Human Papillomavirus L2 Protein to Trigger Retrograde Trafficking.

    abstract::Cell-penetrating peptides (CPPs) are short protein segments that can transport cargos into cells. Although CPPs are widely studied as potential drug delivery tools, their role in normal cell physiology is poorly understood. Early during infection, the L2 capsid protein of human papillomaviruses binds retromer, a cytop...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2018.07.031

    authors: Zhang P,Monteiro da Silva G,Deatherage C,Burd C,DiMaio D

    更新日期:2018-09-06 00:00:00

  • Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2.

    abstract::We used the interaction trap, a yeast genetic selection for interacting proteins, to isolate human cyclin-dependent kinase interactor 1 (Cdi1). In yeast, Cdi1 interacts with cyclin-dependent kinases, including human Cdc2, Cdk2, and Cdk3, but not with Ckd4. In HeLa cells, Cdi1 is expressed at the G1 to S transition, an...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(93)90498-f

    authors: Gyuris J,Golemis E,Chertkov H,Brent R

    更新日期:1993-11-19 00:00:00

  • Membrane tension maintains cell polarity by confining signals to the leading edge during neutrophil migration.

    abstract::Little is known about how neutrophils and other cells establish a single zone of actin assembly during migration. A widespread assumption is that the leading edge prevents formation of additional fronts by generating long-range diffusible inhibitors or by sequestering essential polarity components. We use morphologica...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2011.10.050

    authors: Houk AR,Jilkine A,Mejean CO,Boltyanskiy R,Dufresne ER,Angenent SB,Altschuler SJ,Wu LF,Weiner OD

    更新日期:2012-01-20 00:00:00

  • Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.

    abstract::G1-specific transcriptional activation by Cln3/CDK initiates the budding yeast cell cycle. To identify targets of Cln3/CDK, we analyzed the SBF and MBF transcription factor complexes by multidimensional protein interaction technology (MudPIT). Whi5 was identified as a stably bound component of SBF but not MBF. Inactiv...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2004.05.025

    authors: de Bruin RA,McDonald WH,Kalashnikova TI,Yates J 3rd,Wittenberg C

    更新日期:2004-06-25 00:00:00

  • I-mf, a novel myogenic repressor, interacts with members of the MyoD family.

    abstract::During embryogenesis, cells from the ventral and dorsal parts of the somites give rise to sclerotome and dermomyotome, respectively. Dermomyotome contains skeletal muscle precursors that are determined by the MyoD family of myogenic factors. We have isolated a novel myogenic repressor, I-mf (Inhibitor of MyoD family),...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80148-8

    authors: Chen CM,Kraut N,Groudine M,Weintraub H

    更新日期:1996-09-06 00:00:00

  • Nonreciprocal exchange between alleles of the yeast mitochondrial 21S rRNA gene: kinetics and the involvement of a double-strand break.

    abstract::A 1.1 kb intron containing an open reading frame (ORF) in one allele (omega+) of the yeast mitochondrial 21S rRNA gene is nearly quantitatively inserted in crosses into a 21S rRNA allele lacking that intron (omega-). We have determined that this nonreciprocal exchange initiates soon after cells fuse to form zygotes an...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(85)90348-4

    authors: Zinn AR,Butow RA

    更新日期:1985-04-01 00:00:00

  • A cell that dies during wild-type C. elegans development can function as a neuron in a ced-3 mutant.

    abstract::Mutations in the C. elegans gene ced-3 prevent almost all programmed cell deaths, so that in a ced-3 mutant there are many extra cells. We show that the pharyngeal neuron M4 is essential for feeding in wild-type worms, but in a ced-3 mutant, one of the extra cells, probably MSpaaaaap (the sister of M4), can sometimes ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(87)90593-9

    authors: Avery L,Horvitz HR

    更新日期:1987-12-24 00:00:00

  • The herpes simplex virus amplicon: a new eucaryotic defective-virus cloning-amplifying vector.

    abstract::We have employed repeat units of herpes simplex virus (HSV) defective genomes to derive a cloning-amplifying vector (amplicon) that can replicate in eucaryotic cells in the presence of standard HSV helper virus. The design of the HSV amplicon system is based on the previous observation that cotransfection of cells wit...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(82)90035-6

    authors: Spaete RR,Frenkel N

    更新日期:1982-08-01 00:00:00

  • NMR structure of the bacteriophage lambda N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif.

    abstract::The structure of the complex formed by the arginine-rich motif of the transcriptional antitermination protein N of phage lambda and boxB RNA was determined by heteronuclear magnetic resonance spectroscopy. A bent alpha helix in N recognizes primarily the shape and negatively charged surface of the boxB hairpin through...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)81579-2

    authors: Legault P,Li J,Mogridge J,Kay LE,Greenblatt J

    更新日期:1998-04-17 00:00:00

  • New evidence supporting megakaryocyte-erythrocyte potential of flk2/flt3+ multipotent hematopoietic progenitors.

    abstract::A model of hematopoietic development wherein multipotentiality is conserved until segregation of myeloid and lymphoid potential has recently been challenged, proposing that megakaryocyte/erythrocyte (MegE) potential is lost in Flk2/Flt3-expressing early progenitors. Here, we used sensitive in vivo approaches to quanti...

    journal_title:Cell

    pub_type: 信件

    doi:10.1016/j.cell.2006.06.037

    authors: Forsberg EC,Serwold T,Kogan S,Weissman IL,Passegué E

    更新日期:2006-07-28 00:00:00

  • Treatment of obesity with celastrol.

    abstract::Despite all modern advances in medicine, an effective drug treatment of obesity has not been found yet. Discovery of leptin two decades ago created hopes for treatment of obesity. However, development of leptin resistance has been a big obstacle, mitigating a leptin-centric treatment of obesity. Here, by using in sili...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2015.05.011

    authors: Liu J,Lee J,Salazar Hernandez MA,Mazitschek R,Ozcan U

    更新日期:2015-05-21 00:00:00

  • Enhancer activation requires trans-recruitment of a mega transcription factor complex.

    abstract::Enhancers provide critical information directing cell-type-specific transcriptional programs, regulated by binding of signal-dependent transcription factors and their associated cofactors. Here, we report that the most strongly activated estrogen (E2)-responsive enhancers are characterized by trans-recruitment and in ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2014.08.027

    authors: Liu Z,Merkurjev D,Yang F,Li W,Oh S,Friedman MJ,Song X,Zhang F,Ma Q,Ohgi KA,Krones A,Rosenfeld MG

    更新日期:2014-10-09 00:00:00

  • The structure and regulation of human muscle α-actinin.

    abstract::The spectrin superfamily of proteins plays key roles in assembling the actin cytoskeleton in various cell types, crosslinks actin filaments, and acts as scaffolds for the assembly of large protein complexes involved in structural integrity and mechanosensation, as well as cell signaling. α-actinins in particular are t...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2014.10.056

    authors: Ribeiro Ede A Jr,Pinotsis N,Ghisleni A,Salmazo A,Konarev PV,Kostan J,Sjöblom B,Schreiner C,Polyansky AA,Gkougkoulia EA,Holt MR,Aachmann FL,Zagrović B,Bordignon E,Pirker KF,Svergun DI,Gautel M,Djinović-Carugo K

    更新日期:2014-12-04 00:00:00

  • The Mitochondrial Unfolded Protein Response Is Mediated Cell-Non-autonomously by Retromer-Dependent Wnt Signaling.

    abstract::The mitochondrial unfolded protein response (UPRmt) can be triggered in a cell-non-autonomous fashion across multiple tissues in response to mitochondrial dysfunction. The ability to communicate information about the presence of mitochondrial stress enables a global response that can ultimately better protect an organ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2018.06.029

    authors: Zhang Q,Wu X,Chen P,Liu L,Xin N,Tian Y,Dillin A

    更新日期:2018-08-09 00:00:00

  • Drosophila atrophin homolog functions as a transcriptional corepressor in multiple developmental processes.

    abstract::Dentatorubral-pallidoluysian atrophy is a progressive neurodegenerative disease caused by the expansion of a polyglutamine repeats within the Atrophin-1 protein. The in vivo function of Atrophin-1 is unknown. We have characterized a Drosophila gene encoding an Atrophin family protein. Analysis of mutant phenotypes ind...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(01)00630-4

    authors: Zhang S,Xu L,Lee J,Xu T

    更新日期:2002-01-11 00:00:00

  • Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19.

    abstract::We present an integrated analysis of the clinical measurements, immune cells, and plasma multi-omics of 139 COVID-19 patients representing all levels of disease severity, from serial blood draws collected during the first week of infection following diagnosis. We identify a major shift between mild and moderate diseas...

    journal_title:Cell

    pub_type: 临床试验,杂志文章,多中心研究

    doi:10.1016/j.cell.2020.10.037

    authors: Su Y,Chen D,Yuan D,Lausted C,Choi J,Dai CL,Voillet V,Duvvuri VR,Scherler K,Troisch P,Baloni P,Qin G,Smith B,Kornilov SA,Rostomily C,Xu A,Li J,Dong S,Rothchild A,Zhou J,Murray K,Edmark R,Hong S,Heath JE,Ear

    更新日期:2020-12-10 00:00:00

  • Brefeldin A causes a microtubule-mediated fusion of the trans-Golgi network and early endosomes.

    abstract::Brefeldin A (BFA) is a fungal metabolite that causes a redistribution of the stacked cisternae of the Golgi complex into the endoplasmic reticulum by inhibiting anterograde transport. We report that BFA also causes membrane tubules derived from the trans-Golgi network (TGN) to fuse with early endosomes. In the presenc...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(91)90533-5

    authors: Wood SA,Park JE,Brown WJ

    更新日期:1991-11-01 00:00:00

  • A Non-canonical Voltage-Sensing Mechanism Controls Gating in K2P K(+) Channels.

    abstract::Two-pore domain (K2P) K(+) channels are major regulators of excitability that endow cells with an outwardly rectifying background "leak" conductance. In some K2P channels, strong voltage-dependent activation has been observed, but the mechanism remains unresolved because they lack a canonical voltage-sensing domain. H...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2016.02.002

    authors: Schewe M,Nematian-Ardestani E,Sun H,Musinszki M,Cordeiro S,Bucci G,de Groot BL,Tucker SJ,Rapedius M,Baukrowitz T

    更新日期:2016-02-25 00:00:00

  • Synaptic asymmetry to go.

    abstract::Cell polarity is critical for T lymphocyte movement during their hunt for antigen-bearing cells and for infected target cells. In this issue of Cell, Yeh et al. (2008) now reveal a direct link between T cell polarity and the production of proinflammatory cytokines in mice lacking the class I MHC-restricted T cell-asso...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2008.02.016

    authors: Dustin ML

    更新日期:2008-03-07 00:00:00