Quantitative trait locus analysis of multiple agronomic traits in the model legume Lotus japonicus.

Abstract:

:The first quantitative trait locus (QTL) analysis of multiple agronomic traits in the model legume Lotus japonicus was performed with a population of recombinant inbred lines derived from Miyakojima MG-20 x Gifu B-129. Thirteen agronomic traits were evaluated in 2004 and 2005: traits of vegetative parts (plant height, stem thickness, leaf length, leaf width, plant regrowth, plant shape, and stem color), flowering traits (flowering time and degree), and pod and seed traits (pod length, pod width, seeds per pod, and seed mass). A total of 40 QTLs were detected that explained 5%-69% of total variation. The QTL that explained the most variation was that for stem color, which was detected in the same region of chromosome 2 in both years. Some QTLs were colocated, especially those for pod and seed traits. Seed mass QTLs were located at 5 locations that mapped to the corresponding genomic positions of equivalent QTLs in soybean, pea, chickpea, and mung bean. This study provides fundamental information for breeding of agronomically important legume crops.

journal_name

Genome

journal_title

Genome

authors

Gondo T,Sato S,Okumura K,Tabata S,Akashi R,Isobe S

doi

10.1139/g07-040

subject

Has Abstract

pub_date

2007-07-01 00:00:00

pages

627-37

issue

7

eissn

0831-2796

issn

1480-3321

pii

g07-040

journal_volume

50

pub_type

杂志文章

相关文献

GENOME文献大全
  • Development, characterization, and comparative analysis of polymorphism at common bean SSR loci isolated from genic and genomic sources.

    abstract::Microsatellites or SSRs (single sequence repeats) have been used to construct and integrate genetic maps in crop species, including Phaseolus vulgaris. In the present study, 3 cDNA libraries generated by the Bean EST project (http://lgm.esalq.usp.br/BEST/), comprising a unigene collection of 3126 sequences and a genom...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g07-007

    authors: Hanai LR,de Campos T,Camargo LE,Benchimol LL,de Souza AP,Melotto M,Carbonell SA,Chioratto AF,Consoli L,Formighieri EF,Siqueira MV,Tsai SM,Vieira ML

    更新日期:2007-03-01 00:00:00

  • AFLP targeting of the 1-cM region conferring the vrs1 gene for six-rowed spike in barley, Hordeum vulgare L.

    abstract::Spike morphology is a key characteristic in the study of barley domestication, yield, and use. Multiple alleles at the vrs1 locus control the development and fertility of the lateral spikelets of barley. We developed five amplified fragment length polymorphism (AFLP) markers tightly linked to the vrs1 locus using well...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-073

    authors: He C,Sayed-Tabatabaei BE,Komatsuda T

    更新日期:2004-12-01 00:00:00

  • QTL mapping of seed-quality traits in sunflower recombinant inbred lines under different water regimes.

    abstract::The objectives of the present research were to determine the effects of water stress on seed-quality traits and to map QTLs controlling the studied traits under two different water treatments in a population of sunflower recombinant inbred lines (RILs). Two experiments were conducted in greenhouse and field conditions...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/G08-038

    authors: Ebrahimi A,Maury P,Berger M,Kiani SP,Nabipour A,Shariati F,Grieu P,Sarrafi A

    更新日期:2008-08-01 00:00:00

  • Spectral karyotyping (SKY) of mouse meiotic chromosomes.

    abstract::The spectral karyotyping procedure of in situ hybridization with chromosome-specific probes assigns a unique colour code to each of the 21 mouse mitotic chromosomes. We have adapted this procedure to meiotic prophase chromosomes, and the results show that each of the pachytene or metaphase I bivalents can be identifie...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g01-018

    authors: Heng HH,Liu G,Lu W,Bremer S,Ye CJ,Hughes M,Moens P

    更新日期:2001-04-01 00:00:00

  • Genome and transcriptome analysis of the latent pathogen Lasiodiplodia theobromae, an emerging threat to the cacao industry.

    abstract::Lasiodiplodia theobromae (Pat.) Griffon & Maubl., a member of the family Botryosphaeriaceae, is becoming a significant threat to crops and woody plants in many parts of the world, including the major cacao growing areas. While attempting to isolate Ceratobasidium theobromae, a causal agent of vascular streak dieback (...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2019-0112

    authors: Ali SS,Asman A,Shao J,Balidion JF,Strem MD,Puig AS,Meinhardt LW,Bailey BA

    更新日期:2020-01-01 00:00:00

  • Relationship between pachytene synapsis, metaphase I associations, and transmission of 2B and 4B chromosomes in rye.

    abstract::2B rye plants selected for high (H) or low (L) B transmission rate were studied at pachytene and metaphase I of meiosis to determine the relationship between synapsis, bivalents at metaphase I, and B transmission rate. The results show that the 2 B chromosomes (Bs) form bivalents at pachytene in both the H and L lines...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Jiménez G,Manzanero S,Puertas MJ

    更新日期:2000-04-01 00:00:00

  • Characterisation and physical localisation of Ty1-copia-like retrotransposons in four Alstroemeria species.

    abstract::The genus Alstroemeria contains species with large genomes (2C = 36.5-78.9 pg (17,600-38,000 Mb) in those species with 2n = 2x = 16). We investigated the diversity and genomic and chromosomal organisation of Ty1-copia-like retrotransposons in four Alstroemeria species. Analysis of 33 PCR-amplified sequences correspond...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-048

    authors: Kuipers AG,Heslop-Harrison JS,Jacobsen E

    更新日期:1998-06-01 00:00:00

  • Sequence analysis of single-copy genes in two wild olive subspecies: nucleotide diversity and potential use for testing admixture.

    abstract::The wild olive distribution extends from the Mediterranean region to south Asia and Austral Africa. The species is also invasive, particularly in Australia. Here, we investigated the sequence variation at five nuclear single-copy genes in 41 native and invasive accessions of the Mediterranean and African olive subspec...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2014-0001

    authors: Besnard G,El Bakkali A

    更新日期:2014-03-01 00:00:00

  • Association of the NAD(P)H-bispecific nitrate reductase structural gene with the Nar7 locus in barley.

    abstract::The NADH-specific and NAD(P)H-bispecific nitrate reductase genes from barley have been cloned and sequenced. To determine if the Nar7 locus encodes the NAD(P)H-bispecific nitrate reductase structural gene, a cross was made between a wild-type cultivar, Morex (Nar7 Nar7), and Az70 (nar7w nar7w), a mutant from the culti...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-093

    authors: Warner RL,Kudrna DA,Kleinhofs A

    更新日期:1995-08-01 00:00:00

  • Isolation and characterization of polymorphic microsatellites in Cocos nucifera L.

    abstract::Microsatellites or simple sequence repeats (SSRs) were isolated from coconut (Cocos nucifera) and tested for polymorphism on restricted germplasm. Sequencing of 197 clones from a cv. Tagnanan Tall-enriched genomic library showed that 75% contained a microsatellite, of which 64% were dinucleotide (GA/CT, CA/GT and GC/C...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-170

    authors: Rivera R,Edwards KJ,Barker JH,Arnold GM,Ayad G,Hodgkin T,Karp A

    更新日期:1999-08-01 00:00:00

  • Alterations in subtelomeric tandem repeats during early stages of allopolyploidy in wheat.

    abstract::The genomic content of the subtelomeric repeated sequences Spelt1 and Spelt52 was studied by dot, Southern, and in situ hybridization in 11 newly synthesized amphiploids of Aegilops and Triticum, and data were compared with the parental plants. Spelt1 had reduced copy numbers in the first generation of three synthetic...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-044

    authors: Salina EA,Numerova OM,Ozkan H,Feldman M

    更新日期:2004-10-01 00:00:00

  • A method for assaying the sensitivity of Drosophila replication checkpoint mutants to anti-cancer and DNA-damaging drugs.

    abstract::In multi-cellular organisms, failure to properly regulate cell-cycle progression can result in inappropriate cell death or uncontrolled cell division leading to tumor formation. To guard against such events, conserved regulatory mechanisms called "checkpoints" block progression into mitosis in response to DNA damage a...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-051

    authors: Radcliffe CM,Silva EA,Campbell SD

    更新日期:2002-10-01 00:00:00

  • TaqI digestion reveals fractions of satellite DNAs on human chromosomes.

    abstract::Restriction endonuclease TaqI has been known as a nonbanding restriction endonuclease when it is used on fixed human chromosomes. However, a specific TaqI digestion can be obtained after varying experimental conditions such as concentration of enzyme, time of incubation, and volume of the final reaction mixture. This ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g91-039

    authors: Tagarro I,González-Aguilera JJ,Fernández-Peralta AM

    更新日期:1991-04-01 00:00:00

  • Localization of the 68,000-Da human neurofilament gene (NF68) using a murine cDNA probe.

    abstract::A recent investigation, using a human genomic probe, has indicated that the 68,000 dalton neurofilament gene (NF68) is on the short arm of chromosome 8. We have used a murine cDNA probe on 65 metaphase spreads in situ to localize the human NF68 gene to 8p21 (20/370 grains; p less than 0.0001). In addition, we have fou...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g88-083

    authors: Somerville MJ,McLachlan DR,Percy ME

    更新日期:1988-08-01 00:00:00

  • Genetic segregation of random amplified polymorphic DNA in diploid cultivated alfalfa.

    abstract::Polymerase chain reaction was used, with single 10-mer primers of arbitrary sequence, to amplify random regions of genomic DNA from a diploid cultivated alfalfa backcross population. Segregation of the random amplified polymorphic DNA (RAPD) fragments was analysed to determine if RAPD markers are suitable for use as g...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g92-014

    authors: Echt CS,Erdahl LA,McCoy TJ

    更新日期:1992-02-01 00:00:00

  • EST sequencing and gene expression profiling of cultivated peanut (Arachis hypogaea L.).

    abstract::Peanut (Arachis hypogaea L.) is one of the most important oil crops in the world. However, biotechnological based improvement of peanut is far behind many other crops. It is critical and urgent to establish the biotechnological platform for peanut germplasm innovation. In this study, a peanut seed cDNA library was con...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-074

    authors: Bi YP,Liu W,Xia H,Su L,Zhao CZ,Wan SB,Wang XJ

    更新日期:2010-10-01 00:00:00

  • Transcriptome analysis reveals hybridization-induced genome shock in an interspecific F1 hybrid from Camellia.

    abstract::The combination of two divergent genomes during hybridization can result in "genome shock". Although genome shock has been reported in the hybrids of some herbaceous plants, the pattern and the principle it follows are far from understood, especially in woody plants. Here, the gene expression patterns were remodeled i...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0105

    authors: Zhang M,Liu XK,Fan W,Yan DF,Zhong NS,Gao JY,Zhang WJ

    更新日期:2018-07-01 00:00:00

  • Phenetic relationships among different races of Striga gesnerioides (Willd.) Vatke from West Africa.

    abstract::Striga gesnerioides is a root hemiparasite that primarily parasitizes dicotyledonous species, including cowpea (Vigna unguiculata L.) and other legumes. Based on the differential resistance response of various cultivars, landraces, and breeding lines, it has been proposed that several distinct races of cowpea-parasiti...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-086

    authors: Botanga CJ,Timko MP

    更新日期:2006-11-01 00:00:00

  • Isochromosome Y in an infertile heifer.

    abstract::The chromosome makeup of a 3-year-old crossbred heifer was examined in an attempt to explore the cytogenetic causes of her infertility. The heifer proved to be a mosaic carrying predominantly XY cells and with approximately 30% of cells lacking a normal Y. The minor population included cells carrying a dicentric isoch...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g90-104

    authors: Pinheiro LE,Mikich AB,Bechara GH,Almeida IL,Basrur PK

    更新日期:1990-10-01 00:00:00

  • Mapping the SRY gene in Microtus cabrerae: a vole species with multiple SRY copies in males and females.

    abstract::The SRY gene is a single-copy, male-specific gene, located on the Y chromosome in most mammals. However, recently we have described the presence of multiple polymorphic copies of this gene in both males and females of the vole species Microtus cabrerae. Here, we present the chromosomal localization of SRY gene copies ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-007

    authors: Fernández R,Barragán MJ,Bullejos M,Marchal JA,Martínez S,Díaz de la Guardia R,Sánchez A

    更新日期:2002-06-01 00:00:00

  • Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii.

    abstract::Asarum sieboldii a well-known traditional Chinese medicinal herb, is used for curing inflammation and ache. It contains both bioactive ingredient asarinin and the toxic compound aristolochic acid. To address further breeding demand, genes involved in the biosynthetic pathways of asarinin and aristolochic acid should b...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0095

    authors: Chen C,Shi X,Zhou T,Li W,Li S,Bai G

    更新日期:2020-12-15 00:00:00

  • Intraspecific sequence variation in the mitochondrial genome of rainbow trout (Oncorhynchus mykiss).

    abstract::We examined the sequence of a 2214 base pair HindIII fragment from the mitochondrial genome of six rainbow trout. The fragment encodes four proteins and two tRNAs. Sequences for two fish from a single locality were identical. Those from separate localities differed by from 1 to 7 nucleotide substitutions. Of 13 variab...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g90-003

    authors: Beckenbach AT,Thomas WK,Sohrabi H

    更新日期:1990-02-01 00:00:00

  • Isolation and preliminary characterization of histone H1.b allelic variants from quail erythrocytes.

    abstract::Our goal was to purify and characterize the allelic variants H1b1 and H1b2 of histone H1.b, one of the seven subtypes of this linker histone extracted from Japanese quail erythrocyte nuclei. These variants are revealed phenotypically as band H1.3 or part of band H1.4 by polyacrylamide gel electrophoresis (PAGE) in sod...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Pałyga J,Neelin JM

    更新日期:1998-10-01 00:00:00

  • Clonal variation in the parthenogenetic rock lizard Lacerta armeniaca.

    abstract::Genetic diversity at 35 allozyme loci was surveyed in seven populations of Lacerta armeniaca. Fixed heterozygotes were present at 16 loci, with homozygotes at 17 loci. Variation occurred at two loci, one in each of two populations, indicating one widespread clone, one restricted clone, and one apparently restricted cl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-141

    authors: Macculloch RD,Murphy RW,Kupriyanova LA,Darevsky IS,Danielyan FD

    更新日期:1995-12-01 00:00:00

  • Development and characterization of recombinant chromosome substitution lines (RCSLs) using Hordeum vulgare subsp. spontaneum as a source of donor alleles in a Hordeum vulgare subsp. vulgare background.

    abstract::The ancestor of barley (Hordeum vulgare subsp. spontaneum) may be a source of novel alleles for crop improvement. We developed a set of recombinant chromosome substitution lines (RCSLs) using an accession of H. vulgare subsp. spontaneum (Caesarea 26-24, from Israel) as the donor and Hordeum vulgare subsp. vulgare 'Har...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-080

    authors: Matus I,Corey A,Filichkin T,Hayes PM,Vales MI,Kling J,Riera-Lizarazu O,Sato K,Powell W,Waugh R

    更新日期:2003-12-01 00:00:00

  • The HtrA2 Drosophila model of Parkinson's disease is suppressed by the pro-survival Bcl-2 Buffy.

    abstract::Mutations in High temperature requirement A2 (HtrA2), also designated PARK13, which lead to the loss of its protease activity, have been associated with Parkinson's disease (PD). HtrA2 is a mitochondrial protease that translocates to the cytosol upon the initiation of apoptosis where it participates in the abrogation ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2016-0069

    authors: M'Angale PG,Staveley BE

    更新日期:2017-01-01 00:00:00

  • Mitochondrial genome analysis of the predatory mite Phytoseiulus persimilis and a revisit of the Metaseiulus occidentalis mitochondrial genome.

    abstract::In this study we sequenced and analysed the complete mitochondrial (mt) genome of the Chilean predatory mite Phytoseiulus persimilis Athias-Henriot (Chelicerata: Acari: Mesostigmata: Phytoseiidae: Amblyseiinae). The 16 199 bp genome (79.8% AT) contains the standard set of 13 protein-coding and 24 RNA genes. Compared w...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-004

    authors: Dermauw W,Vanholme B,Tirry L,Van Leeuwen T

    更新日期:2010-04-01 00:00:00

  • Molecular evolution of ribosomal intergenic spacers in Odontophrynus americanus 2n and 4n (Amphibia: Anura).

    abstract::Ribosomal intergenic spacers (IGSs) of Odontophrynus americanus 2n and 4n were cloned, restriction mapped, and partially sequenced. Three distinct regions, namely alpha, beta, and delta, were identified in the IGSs. The alpha and beta regions flanked the 28S and 18S rRNA genes, respectively, conserving an identical re...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g01-134

    authors: Alvares LE,Polanco C,Brison O,Coutinho LL,Ruiz IR

    更新日期:2002-02-01 00:00:00

  • Insect mitochondrial genomics 2: The complete mitochondrial genome sequence of a giant stonefly, Pteronarcys princeps, asymmetric directional mutation bias, and conserved plecopteran A+T-region elements.

    abstract::Mitochondrial (mt) genome sequences of insects are receiving renewed attention in molecular phylogentic studies, studies of mt-genome rearrangement, and other unusual molecular phenomena, such as translational frameshifting. At present, the basal neopteran lineages are poorly represented by mt-genome sequences. Comple...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-037

    authors: Stewart JB,Beckenbach AT

    更新日期:2006-07-01 00:00:00

  • A bacterial artificial chromosome library for 'Jefferson' hazelnut and identification of clones associated with eastern filbert blight resistance and pollen-stigma incompatibility.

    abstract::European hazelnut (Corylus avellana L.) is the only economically important nut crop in the family Betulaceae. Because of its small genome size (~385 Mb / 1C), relatively short life cycle, availability of a dense linkage map, and amenability to transformation by Agrobacterium, the European hazelnut could serve as a mod...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-048

    authors: Sathuvalli VR,Mehlenbacher SA

    更新日期:2011-10-01 00:00:00