Genomic analysis of Ovis aries (Ovar) MHC class IIa loci.

Abstract:

:Determining the genomic organization of the Ovis aries (Ovar) major histocompatibility complex class IIa region is essential for future functional studies related to antigen presentation. In this study, a bacterial artificial chromosome (BAC) library of genomic DNA from peripheral blood leukocytes (PBL) of a Rambouillet ram was constructed, and BAC clone consisting of the major histocompatibility complex (MHC) class II DQB2, DQA2, DQB1, DQA1, and DRB1 loci was identified and completely sequenced. The BAC clone consists of 160,889 bp of finished sequence with the loci arranged in the following order: DQB2, DQA2, DQB1, DQA1, and DRB1 with 14.3, 25, 6.6, and 40.9 Kb spanning between the loci, respectively. All five of these loci were transcribed in the animal used to generate the MHC class II BAC clone. Repeat or retrotransposable elements along with MHC class II cis promoter elements consisting of S, X, and Y boxes were identified in the sequence. In addition, 16 non-coding conserved sequences amongst primates, carnivores, and ruminants were identified (p < 0.001). These conserved sequences include binding sites for transcription factors with known roles in immune cells, and they provide a basis for further functional investigation of the genes in this region. This is the first ruminant finished sequence of the DQB2-DRB1 region, and this sequence information will aid in whole genome and transcriptome analyses of MHC class II.

journal_name

Immunogenetics

journal_title

Immunogenetics

authors

Herrmann-Hoesing LM,White SN,Kappmeyer LS,Herndon DR,Knowles DP

doi

10.1007/s00251-008-0275-5

subject

Has Abstract

pub_date

2008-04-01 00:00:00

pages

167-76

issue

3-4

eissn

0093-7711

issn

1432-1211

journal_volume

60

pub_type

杂志文章
  • Biochemical studies on the H-2K mutant B6.C-H-2bm10.

    abstract::The H-2K glycoprotein from the MHC mutant bm10 was analyzed biochemically to determine where primary structural differences distinguished it from the parental standard molecule, Kb. Comparative peptide maps showed differences in two peptides known to be part of the parental CNBr fragment spanning amino acids 139 to 22...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00364285

    authors: Pease LR,Ewenstein BM,McGovern D,Melvold RW,Nisizawa T,Nathenson SG

    更新日期:1983-01-01 00:00:00

  • HLA-A null allele with a stop codon, HLA-A*0215N, identified in a homozygous state in a healthy adult.

    abstract::A healthy adult having no serologically detectable HLA class I A locus antigens was identified. The parents of the individual are consanguineous. Results of a family study indicated that the individual is homozygous for the B46-Cw1-DR8.1 haplotype, which was shown to be positively associated with A*0207 in our previou...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00186597

    authors: Ishikawa Y,Tokunaga K,Tanaka H,Nishimura M,Muraoka M,Fujii Y,Akaza T,Tadokoro K,Juji T

    更新日期:1996-01-01 00:00:00

  • Amino acid 95 causes strong alteration of peptide position Pomega in HLA-B*41 variants.

    abstract::There have been several attempts over the years to identify positions in the peptide-binding region (PBR) of human leukocyte antigens (HLA) that influence the specificity of bound amino acids (AAs) at each position in the peptide. Originally, six pockets (A-F) were defined by calculating the surface area of the PBR on...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-007-0197-7

    authors: Bade-Doeding C,DeLuca DS,Seltsam A,Blasczyk R,Eiz-Vesper B

    更新日期:2007-04-01 00:00:00

  • Killer cell immunoglobulin-like receptor and human leukocyte antigen gene profiles in a cohort of HIV-infected Mexican Mestizos.

    abstract::Killer cell immunoglobulin-like receptors (KIRs) represent the most polymorphic genes responsible for natural killer cell function, while human leukocyte antigen (HLA) class I molecules define and restrict cytotoxic T lymphocyte responses. Specific KIR, HLA, or KIR-HLA combinations have been implicated in the outcome ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-016-0920-3

    authors: Garrido-Rodríguez D,Ávila-Ríos S,García-Morales C,Valenzuela-Ponce H,Ormsby C,Reyes-Gopar H,Fernandez-Lopez JC,Reyes-Terán G

    更新日期:2016-10-01 00:00:00

  • Evidence for an HLA-C-like locus in the orangutan Pongo pygmaeus.

    abstract::HLA-B and C are related class I genes which are believed to have arisen by duplication of a common ancestor. Previous study showed the presence of orthologues for both HLA-B and C in African apes but only for HLA-B in Asian apes. These observations suggested that the primate C locus evolved subsequent to the divergenc...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050566

    authors: Adams EJ,Thomson G,Parham P

    更新日期:1999-09-01 00:00:00

  • Thirty allele-level haplotypes centered around KIR2DL5 define the diversity in an African American population.

    abstract::KIR2DL5 alleles were physically linked to alleles at adjacent KIR loci to define this region of KIR haplotypes in 55 gene-positive random African Americans. The majority carried KIR2DL5B. Three KIR2DL5A and six KIR2DL5B alleles that have been previously described and 11 novel KIR2DL5 alleles were identified by DNA seq...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0458-8

    authors: Hou L,Chen M,Jiang B,Wu D,Ng J,Hurley CK

    更新日期:2010-08-01 00:00:00

  • Different rates of HLA class I molecule assembly which are determined by amino acid sequence in the alpha 2 domain.

    abstract::Assembly of HLA class I molecules was studied using pulse-chase labeling of B-lymphoblastoid cell lines with 35S-methionine, immunoprecipitation with antibodies detecting free or beta 2-microglobulin-associated heavy chain and isoelectric focusing. Marked differences between the products of different class I alleles w...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00216831

    authors: Hill A,Takiguchi M,McMichael A

    更新日期:1993-01-01 00:00:00

  • Chronic allergen challenge induces bronchial mast cell accumulation in BALB/c but not C57BL/6 mice and is independent of IL-9.

    abstract::As genetically engineered mutant mice deficient in single genes are usually generated on a C57BL/6 background, to study mast cell trafficking in mutant mice, we initially investigated whether mast cells accumulated in bronchi in C57BL/6 mice challenged with OVA allergen acutely or chronically for 1 to 3 months. The to...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0452-1

    authors: Pae S,Cho JY,Dayan S,Miller M,Pemberton AD,Broide DH

    更新日期:2010-08-01 00:00:00

  • From transcription to cell surface expression, the induction of MHC class II I-A alpha by interferon-gamma in macrophages is regulated at different levels.

    abstract::Using mouse bone marrow-derived macrophages we determined the role of interferon (IFN)-gamma at the different steps in expression of the I-A alpha chain of MHC class II molecules, from transcription to the cell surface. Levels of transcription, RNA, and protein were low in cells not stimulated with IFN-gamma. Treatmen...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510100312

    authors: Cullell-Young M,Barrachina M,López-López C,Goñalons E,Lloberas J,Soler C,Celada A

    更新日期:2001-03-01 00:00:00

  • Two copies of the genes encoding the subunits of putative interleukin (IL)-4/IL-13 receptors, IL-4Rα, IL-13Rα1 and IL-13Rα2, have been identified in rainbow trout (Oncorhynchus mykiss) and have complex patterns of expression and modulation.

    abstract::Mammalian interleukin-4 (IL-4) and IL-13 are T helper type 2 (Th2) cytokines with pleiotropic functions in immunity. They signal through receptors containing IL-4Rα and IL-2Rγ or IL-13Rα1. In addition, a decoy receptor, IL-13Rα2, is known to exist and modulates the function of IL-13. The existence of fish orthologues ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0508-2

    authors: Wang T,Huang W,Costa MM,Martin SA,Secombes CJ

    更新日期:2011-04-01 00:00:00

  • Characterization of the MHC class II region in cattle. The number of DQ genes varies between haplotypes.

    abstract::The organization of the major histocompatibility complex (MHC) class II region in cattle was investigated by Southern blot analysis using human probes corresponding to DO, DP, DQ, and DR genes. Exon-specific probes were also employed to facilitate the assessment of the number of different bovine class II genes. The re...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00351084

    authors: Andersson L,Rask L

    更新日期:1988-01-01 00:00:00

  • Leukemia-cell rejection due to T-region encoded antigens.

    abstract::The role of H-2- and T-region products in determining allogeneic cell rejection was evaluated in H-2 congenic and recombinant mice by transplanting A1ATH and A6ATL leukemia cell lines induced in A.TH and A.TL strains, respectively, by Moloney murine leukemia virus.--In K- or D-region incompatible hosts transplant fail...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF01561686

    authors: Biasi G,Collavo D,Zanovello P,Chieco-Bianchi L

    更新日期:1981-03-01 00:00:00

  • Identical genetic control of MLC reactivity to different MHC incompatibilities, independent of production of and response to IL-2.

    abstract::The inbred strain STS/A exhibits a higher proliferative response in the mixed lymphocyte culture (MLC) to stimulator cells of all 11 tested inbred mouse strains with 10 different major histocompatibility complex (MHC) haplotypes, as well as to stimulation with IL-2 than does the strain BALB/cHeA. However, alloantigen-...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF02602654

    authors: Holán V,Lipoldová M,Demant P

    更新日期:1996-01-01 00:00:00

  • What to do with HLA-DO?

    abstract::Antigenic peptide binding to MHC class II molecules in the endocytic pathway occurs via a multifactorial process that requires the support of a specialized lysosomal chaperone called HLA-DM. DM shows both in primary amino acid sequence and quaternary structure a high homology to both MHC class I and class II molecules...

    journal_title:Immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1007/s002510000208

    authors: van Ham M,van Lith M,Griekspoor A,Neefjes J

    更新日期:2000-08-01 00:00:00

  • Structural analysis of the RH-like blood group gene products in nonhuman primates.

    abstract::Rh-related transcripts present in bone marrow samples from several species of nonhuman primates (chimpanzee, gorilla, gibbon, crab-eating macaque) have been amplified by RT-polymerase chain reaction using primers deduced from the sequence of human RH genes. Nucleotide sequence analysis of the nonhuman transcripts reve...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00172151

    authors: Salvignol I,Calvas P,Socha WW,Colin Y,Le Van Kim C,Bailly P,Ruffié J,Cartron JP,Blancher A

    更新日期:1995-01-01 00:00:00

  • Reassignment of the murine 3'TRDD1 recombination signal sequence.

    abstract::T cell receptor genes are assembled in developing T lymphocytes from discrete V, D, and J genes by a site-specific somatic rearrangement mechanism. A flanking recombination signal, composed of a conserved heptamer and a semiconserved nonamer separated by 12 or 23 variable nucleotides, targets the activity of the rearr...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-006-0150-1

    authors: Touvrey C,Cowell LG,Lieberman AE,Marche PN,Jouvin-Marche E,Candéias SM

    更新日期:2006-11-01 00:00:00

  • Identification of four highly conserved regions in DNA-PKcs.

    abstract::The gene for the catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) is responsible for severe combined immune deficiency (SCID) and its products associate with Ku70/Ku86 autoantigens, c-Abl, and other factors to exert its roles. Investigations to date suggest that DNA-PKcs comprises several regions which spe...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510000227

    authors: Fujimori A,Araki R,Fukumura R,Ohhata T,Takahashi H,Kawahara A,Tatsumi K,Abe M

    更新日期:2000-09-01 00:00:00

  • Cloning of a new lectin-like receptor expressed on human NK cells.

    abstract::Natural killer (NK) cells constitute the third major population of lymphocytes. They possess the inherent capacity to kill various tumor and virally infected cells and mediate the rejection of bone-marrow grafts in lethally irradiated animals. A large family of NK cell receptors belong to the C-type lectin superfamily...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050679

    authors: Boles KS,Barten R,Kumaresan PR,Trowsdale J,Mathew PA

    更新日期:1999-10-01 00:00:00

  • Protein tyrosine phosphatase domains from the protochordate Styela plicata.

    abstract::Protein tyrosine phosphorylation is an important regulatory mechanism in cell physiology. While the protein tyrosine kinase (PTKase) family has been extensively studied, only six protein tyrosine phosphatases (PTPases) have been described. By Southern blot analysis, genomic DNA from several different phyla were found ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00211693

    authors: Matthews RJ,Flores E,Thomas ML

    更新日期:1991-01-01 00:00:00

  • Alteration of the T-cell receptor repertoire in A.CA mice expressing an Ead transgene.

    abstract::In an effort to generate an A.CA mouse expressing Ed, the Ead gene has been introduced into A.CA mice which lack the major histocompatibility complex (MHC) class II E molecule. Flow cytometric analysis shows cell surface expression of the E alpha chain on lymphocytes and macrophages in the transgenic mice. Analysis of...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF01719237

    authors: Ishikawa S,Chang MY,Diamond B

    更新日期:1991-01-01 00:00:00

  • CC-chemokine receptor 5 polymorphism and age of onset in familial multiple sclerosis. Multiple Sclerosis Genetics Group.

    abstract::Multiple sclerosis (MS) is a common disease of the central nervous system characterized by myelin loss and progressive neurological dysfunction. An underlying genetic susceptibility plays a clear role in the etiology of MS, likely acting in concert with an undefined environmental exposure. Full-genome screenings in mu...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510050621

    authors: Barcellos LF,Schito AM,Rimmler JB,Vittinghoff E,Shih A,Lincoln R,Callier S,Elkins MK,Goodkin DE,Haines JL,Pericak-Vance MA,Hauser SL,Oksenberg JR

    更新日期:2000-04-01 00:00:00

  • Patterns of polymorphism in the MHC class II of a non-passerine bird, the great snipe (Gallinago media).

    abstract::The genomic organisation of the major histocompatibility complex (MHC) seems to vary considerably between different bird species. In order to understand this variation it is important to gather information from different species. We have, for the first time, investigated MHC class II polymorphism in a wader species, t...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-002-0503-3

    authors: Ekblom R,Grahn M,Höglund J

    更新日期:2003-01-01 00:00:00

  • Major histocompatibility complex (MHC) associations with diseases in ethnic groups of the Arabian Peninsula.

    abstract::Since the discovery of human leukocyte antigens (HLAs), the function of major histocompatibility complex (MHC) gene families in a wide range of diseases have been the subject of research for decades. In particular, the associations of autoimmune disorders to allelic variants and candidate genes encoding the MHC are we...

    journal_title:Immunogenetics

    pub_type: 杂志文章,评审

    doi:10.1007/s00251-021-01204-x

    authors: Al Naqbi H,Mawart A,Alshamsi J,Al Safar H,Tay GK

    更新日期:2021-02-02 00:00:00

  • Evolution of Crohn's disease-associated Nod2 mutations.

    abstract::Several lines of evidence have confirmed the importance of Nod2 mutations for disease susceptibility in Crohn's disease. For tracing Nod2 evolution, exons 4a, 4e, 8, and 12 mutations were screened in a collection of 1,064 DNA samples from 52 worldwide populations. The overall allele frequency was 7.5% for single nucle...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-008-0274-6

    authors: Gasche C,Nemeth M,Grundtner P,Willheim-Polli C,Ferenci P,Schwarzenbacher R

    更新日期:2008-02-01 00:00:00

  • Involvement of both HLA and Ig heavy chain haplotypes in human IgA deficiency.

    abstract::Immunoglobulin-A deficiency (IgA-D) is the most common human Ig class deficiency with an estimated frequency of approximately 1 in 500 in the Swedish population. We investigated the immunoglobulin heavy chain constant region gene segments (IGHC) in 103 individuals with IgA-D and the immunoglobulin heavy chain variable...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00218046

    authors: Olsson PG,Hammarström L,Cox DW,Smith CI

    更新日期:1992-01-01 00:00:00

  • HLA class I allele promiscuity revisited.

    abstract::The peptide repertoire presented on human leukocyte antigen (HLA) class I molecules is largely determined by the structure of the peptide binding groove. It is expected that the molecules having similar grooves (i.e., belonging to the same supertype) might present similar/overlapping peptides. However, the extent of p...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-011-0552-6

    authors: Rao X,Hoof I,Costa AI,van Baarle D,Keşmir C

    更新日期:2011-11-01 00:00:00

  • Genomic organization of the mouse Tla locus: study of an endogenous retroviruslike locus reveals polymorphisms related to different Tla haplotypes.

    abstract::A retrovirus element (TLev1) is located within the Thymus leukemia antigen (Tla) locus of the C57BL/10 mouse major histocompatibility complex. Low-copy probes have been isolated from sequences flanking the TLev1 integration site to examine the distribution of TLev1 among inbred mouse strains having genotypically deter...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00345501

    authors: Pampeno C,Meruelo D

    更新日期:1988-01-01 00:00:00

  • Genetic basis of the effects of ultraviolet light B on cutaneous immunity. Evidence that polymorphism at the Tnfa and Lps loci governs susceptibility.

    abstract::The ability of local ultraviolet B (UVB) irradiation to impair the induction of dinitrofluorobenzene (DNFB)-specific contact hypersensitivity (CH) in mice has been shown to be genetically determined. We have explored the possibility that the mouse Tnfa and Lps loci are involved. We demonstrate that C3H/HeN (Lpsn) stra...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00241633

    authors: Yoshikawa T,Streilein JW

    更新日期:1990-01-01 00:00:00

  • Evolution of immunoglobulin heavy chain variable region genes: a VH family can last for 150-200 million years or longer.

    abstract::Many immunoglobulin variable region (IgV) genes are present in the vertebrate genome and provide a basis for antibody diversity. IgV genes have been classified into distinct families according to DNA sequence similarity. Comparisons of VH and VL genes from two mammalian species (mouse and human) have led to the conclu...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00188428

    authors: Andersson E,Matsunaga T

    更新日期:1995-01-01 00:00:00

  • Aberrancy in immunogenicity and cell-surface expression of H-2 antigens on erythrocytes.

    abstract::Immunogenicity for T cell-independent B-cell response assessed by splenic plaque-forming cell (PFC) response and cell-surface expression measured by laser flow cytometry of various class I H-2 antigens on mouse red blood cells (RBC) were compared. It was found that the order of magnitude of both immunogenicity and cel...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00372295

    authors: Nakashima I,Yoshida T,Yokochi T,Ohashi K,Nagase F,Isobe K,Hasegawa Y,Ando K,Inagi R

    更新日期:1986-01-01 00:00:00