HLA class I allele promiscuity revisited.

Abstract:

:The peptide repertoire presented on human leukocyte antigen (HLA) class I molecules is largely determined by the structure of the peptide binding groove. It is expected that the molecules having similar grooves (i.e., belonging to the same supertype) might present similar/overlapping peptides. However, the extent of promiscuity among HLA class I ligands remains controversial: while in many studies T cell responses are detected against epitopes presented by alternative molecules across HLA class I supertypes and loci, peptide elution studies report minute overlaps between the peptide repertoires of even related HLA molecules. To get more insight into the promiscuous peptide binding by HLA molecules, we analyzed the HLA peptide binding data from the large epitope repository, Immune Epitope Database (IEDB), and further performed in silico analysis to estimate the promiscuity at the population level. Both analyses suggest that an unexpectedly large fraction of HLA ligands (> 50%) bind two or more HLA molecules, often across supertype or even loci. These results suggest that different HLA class I molecules can nevertheless present largely overlapping peptide sets, and that "functional" HLA polymorphism on individual and population level is probably much lower than previously anticipated.

journal_name

Immunogenetics

journal_title

Immunogenetics

authors

Rao X,Hoof I,Costa AI,van Baarle D,Keşmir C

doi

10.1007/s00251-011-0552-6

subject

Has Abstract

pub_date

2011-11-01 00:00:00

pages

691-701

issue

11

eissn

0093-7711

issn

1432-1211

journal_volume

63

pub_type

杂志文章
  • Two distinct TL-like molecular subsets defined by monoclonal antibodies on the surface of human thymocytes with different expression on leukemia lines.

    abstract::Monoclonal antibodies reacting with TL-like class I antigens expressed on the surface of human thymocytes and some T leukemia lines were found to define three independent epitopic clusters, two of which could be shown to reside on serologically distinct molecular subsets by a solid-phase radioimmunoassay as well as by...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00364207

    authors: Olive D,Dubreuil P,Mawas C

    更新日期:1984-01-01 00:00:00

  • Identification and characterization of the lamprey cathepsin genes.

    abstract::Cathepsins are key mammalian proteases that play an important role in the immune response. Several studies have revealed the versatile and critical functions of cathepsins. Here, we obtained ten kinds of cathepsin homologs and identified seven homologs with complete coding sequences. Phylogenetic analysis verified the...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-019-01117-w

    authors: Wang D,Su P,Wang X,Liu K,Li C,Gao X,Lu J,Sun F,Li Q,Pang Y

    更新日期:2019-05-01 00:00:00

  • H-2 influences phenytoin binding and inhibition of prostaglandin synthesis.

    abstract::We have reported that susceptibility to glucocorticoid- and phenytoin-induced cleft palate and glucocorticoid receptor levels in mice are influenced by the H-2 histocompatibility complex on chromosome 17. Phenytoin competes with glucocorticoids for the glucocorticoid receptor and inhibits production of prostaglandins ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00430325

    authors: Gupta C,Katsumata M,Goldman AS

    更新日期:1984-01-01 00:00:00

  • Exon duplication and triplication in the human T-cell receptor gamma constant region genes and RFLP in French, Lebanese, Tunisian, and black African populations.

    abstract::The human T-cell receptor gamma (TCRG) locus comprises 14 variable genes (TRGV), five joining segments (TRGJ), and two constant region genes (TRGC). The constant gamma 1 gene, TRGC1, consists of three exons, whereas the TRGC2 gene contains four or five exons due to the duplication or triplication of exon 2 and spans 9...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00373641

    authors: Buresi C,Ghanem N,Huck S,Lefranc G,Lefranc MP

    更新日期:1989-01-01 00:00:00

  • Position 45 influences the peptide binding motif of HLA-B*44:08.

    abstract::Position 45 represents a highly polymorphic residue within HLA class I alleles, which contacts the p2 position of bound peptides in 85% of the peptide-HLA structures analyzed, while the neighboring residues 41 and 46 are not involved in peptide binding. To investigate the influence of residue 45 at the functional leve...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-011-0583-z

    authors: Badrinath S,Huyton T,Schumacher H,Blasczyk R,Bade-Doeding C

    更新日期:2012-03-01 00:00:00

  • Genomic analysis of Fas and FasL genes and absence of correlation with disease progression in AIDS.

    abstract::Apoptosis has been suggested as a major mechanism for the CD4(+) T-lymphocyte depletion observed in patients infected with human immunodeficiency virus 1 (HIV-1). To evaluate the impact of genetic variations to apoptosis during progression of acquired immunodeficiency syndrome (AIDS), we have performed an extensive ge...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-004-0664-3

    authors: Vasilescu A,Heath SC,Diop G,Do H,Hirtzig T,Hendel H,Bertin-Maghit S,Rappaport J,Therwath A,Lathrop GM,Matsuda F,Zagury JF

    更新日期:2004-04-01 00:00:00

  • Study of an H-2Kd mutant strain: C.B6-H-2dm4.

    abstract::A new H-2 mutant involving the H-2d haplotype is described--C.B6-H-2dm4 (dm4). This mutant strain carries a gain and loss mutation which maps to the Kd gene of the H-2 complex. Serological testing comparing the mutant and the parental BALB/cKh strain failed to detect any difference between the two strains and no antib...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF01561695

    authors: Morgan G,Dellos H,McKenzie IF,Melvold RW

    更新日期:1981-03-01 00:00:00

  • Tissue distribution and polymorphism of minor histocompatibility antigens involved in GVHR.

    abstract::A graft-vs-host reaction (GVHR) develops after major histocompatibility complex (MHC)-compatible bone marrow-transplantation. In the genetic combination studied, B10.D2 donor cells differed from those of (DBA/2 x B10.D2)F1 mice for multiple DBA/2 minor histocompatibility antigens (mHAg) and minor lymphocyte stimulatin...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00241258

    authors: Miconnet I,de la Selle V,Tucek C,Huchet R,Bonardelle D,Bruley-Rosset M

    更新日期:1994-01-01 00:00:00

  • P1 and cosmid clones define the organization of 280 kb of the mouse H-2 complex containing the Cps-1 and Hsp70 loci.

    abstract::A 280 kilobase (kb) contig was isolated from mouse genomic P1 and cosmid libraries, using as probes human cDNA and genomic DNA fragments that map in the interval between the second component of complement and tumor necrosis factor genes of the HLA complex. The clone contig demonstrates synteny of eleven mouse genes th...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00171796

    authors: Gasser DL,Sternberg NL,Pierce JC,Goldner-Sauve A,Feng H,Haq AK,Spies T,Hunt C,Buetow KH,Chaplin DD

    更新日期:1994-01-01 00:00:00

  • Localization of CT beta and C kappa on mouse chromosome 6.

    abstract::In the mouse three lymphocyte gene families have been positioned on the proximal region of chromosome 6. Originally the immunoglobulin kappa light chain (Igk) and the thymocyte surface antigens Lyt-2 and Lyt-3 were assigned to chromosome 6, and recently the beta chain of the T-cell receptor for antigen was positioned ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00404487

    authors: D'Hoostelaere LA,Jouvin-Marche E,Huppi K

    更新日期:1985-01-01 00:00:00

  • Two copies of the genes encoding the subunits of putative interleukin (IL)-4/IL-13 receptors, IL-4Rα, IL-13Rα1 and IL-13Rα2, have been identified in rainbow trout (Oncorhynchus mykiss) and have complex patterns of expression and modulation.

    abstract::Mammalian interleukin-4 (IL-4) and IL-13 are T helper type 2 (Th2) cytokines with pleiotropic functions in immunity. They signal through receptors containing IL-4Rα and IL-2Rγ or IL-13Rα1. In addition, a decoy receptor, IL-13Rα2, is known to exist and modulates the function of IL-13. The existence of fish orthologues ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0508-2

    authors: Wang T,Huang W,Costa MM,Martin SA,Secombes CJ

    更新日期:2011-04-01 00:00:00

  • H-2 effects on cell-cell interactions in the response to single non-H2 alloantigens. IV. Variations in the proliferative response to H-Y and H-3.

    abstract::Individual mice were tested for their proliferation T-cell response to H-Y- and H-3-incompatible stimulator cells in secondary mixed lymphocyte culture. Responders expressing the H-2b haplotype were restricted in their response to stimulators presenting H-Y and H-3 in the context of H-2b. Lymphocytes from individual B...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00342193

    authors: Wettstein PJ

    更新日期:1981-01-01 00:00:00

  • Analysis of three distinct Ly6-A-related cDNA sequences isolated from rat kidney.

    abstract::Mouse Ly6A and Ly6C cDNA probes were hybridized to total RNA of rat tissues and, as in mouse, the highest level of Ly6-related transcripts was detected in kidney. Therefore, Ly6-related cDNA clones were isolated from a commercial rat kidney cDNA library in lambda gt11. Four of these (RK3, RK6, RK10, and RK11) have bee...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00661220

    authors: Friedman S,Palfree RG,Sirlin S,Hämmerling U

    更新日期:1990-01-01 00:00:00

  • Identification of expressed bovine class I MHC genes at two loci and demonstration of physical linkage.

    abstract::A cDNA library prepared from lymphocytes of a cow (E98), homozygous at major histocompatibility complex (MHC) loci (BoLA phenotype w10, KN104), was screened with a bovine MHC class I probe. Of the cDNA clones isolated, two, (2.1 and 5.1) were selected and showed divergence at both 5' and 3' termini. E98 DNA was digest...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00230502

    authors: Bensaid A,Kaushal A,Baldwin CL,Clevers H,Young JR,Kemp SJ,MacHugh ND,Toye PG,Teale AJ

    更新日期:1991-01-01 00:00:00

  • The dichotomous size variation of human complement C4 genes is mediated by a novel family of endogenous retroviruses, which also establishes species-specific genomic patterns among Old World primates.

    abstract::The human complement C4 genes in the HLA exhibit an unusual, dichotomous size polymorphism and a four-gene, modular variation involving novel gene RP, complement C4, steroid 21-hydroxylase (CYP21), and tenascin-like Gene X (RCCX). The C4 gene size dichotomy is mediated by an endogenous retrovirus, HERV-K(C4). Nearly i...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00177825

    authors: Dangel AW,Mendoza AR,Baker BJ,Daniel CM,Carroll MC,Wu LC,Yu CY

    更新日期:1994-01-01 00:00:00

  • Associations of the IL2Ralpha, IL4Ralpha, IL10Ralpha, and IFN (gamma) R1 cytokine receptor genes with AIDS progression in a French AIDS cohort.

    abstract::We have performed an extensive analysis of Th1/Th2 cytokine receptors IL2Ralpha, IL4Ralpha, IL10Ralpha, and IFNgammaR1 gene polymorphisms to evaluate their impact on AIDS progression. The coding regions and promoters of these genes were sequenced in the genetics of resistance to immunodeficiency virus cohort, composed...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-005-0072-3

    authors: Do H,Vasilescu A,Diop G,Hirtzig T,Coulonges C,Labib T,Heath SC,Spadoni JL,Therwath A,Lathrop M,Matsuda F,Zagury JF

    更新日期:2006-04-01 00:00:00

  • Cynomolgus and pigtail macaque IgG subclasses: characterization of IGHG genes and computational analysis of IgG/Fc receptor binding affinity.

    abstract::Macaques are the most widely used experimental nonhuman primate (NHP) species. Rhesus (Macaca mulatta, Macmul), cynomolgus (Macaca fascicularis, Macfas), and pigtail (Macaca nemestrina, Macnem) macaques continue to be popular models for vaccine and infectious diseases research, especially HIV infection and AIDS, and f...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-014-0775-4

    authors: Nguyen DC,Sanghvi R,Scinicariello F,Pulit-Penaloza J,Hill N,Attanasio R

    更新日期:2014-06-01 00:00:00

  • Heavy-chain antibodies in Camelidae; a case of evolutionary innovation.

    abstract::The emergence in Camelidae species of functional antibodies devoid of light chains (referred to as heavy-chain antibodies or HCAbs) is an intriguing evolutionary event. Homodimeric HCAbs have also been documented in spotted ratfish ( Cos5-Abs) and nurse shark (NAR). To reveal the evolutionary history of HCAbs, we eval...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-002-0433-0

    authors: Nguyen VK,Su C,Muyldermans S,van der Loo W

    更新日期:2002-04-01 00:00:00

  • NetCTLpan: pan-specific MHC class I pathway epitope predictions.

    abstract::Reliable predictions of immunogenic peptides are essential in rational vaccine design and can minimize the experimental effort needed to identify epitopes. In this work, we describe a pan-specific major histocompatibility complex (MHC) class I epitope predictor, NetCTLpan. The method integrates predictions of proteaso...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0441-4

    authors: Stranzl T,Larsen MV,Lundegaard C,Nielsen M

    更新日期:2010-06-01 00:00:00

  • The reported germline repertoire of human immunoglobulin kappa chain genes is relatively complete and accurate.

    abstract::We describe a bioinformatic analysis of germline and rearranged immunoglobulin kappa chain (IGK) gene sequences, performed in order to assess the completeness and reliability of the reported IGK repertoire. In contrast to the reported heavy-chain gene repertoire, which includes many dubious sequences, only five IGK va...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-008-0325-z

    authors: Collins AM,Wang Y,Singh V,Yu P,Jackson KJ,Sewell WA

    更新日期:2008-11-01 00:00:00

  • Polymorphism in the regulatory region of HLA-DRB genes correlating with haplotype evolution.

    abstract::Class II genes of the human major histocompatibility complex (MHC) are polymorphic. Allelic variation of the coding region of these genes is involved in the antigen presentation and is associated with susceptibility to certain autoimmune diseases. The DR region is unique among human class II regions in that multiple D...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00216386

    authors: Louis P,Eliaou JF,Kerlan-Candon S,Pinet V,Vincent R,Clot J

    更新日期:1993-01-01 00:00:00

  • Immunoglobulin variable-region diversity in the zebrafish.

    abstract::As part of an investigation of the immune system in the developing zebrafish, Danio rerio, we cloned and characterized a genomic V(H) segment and a number of cDNAs encoding IgM heavy chains. The genomic V(H) has the characteristic features of V(H) in other vertebrates, including a leader segment interrupted by a short...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s002510000255

    authors: Danilova N,Hohman VS,Kim EH,Steiner LA

    更新日期:2000-11-01 00:00:00

  • A natural CCL5/RANTES variant antagonist for CCR1 and CCR3.

    abstract::The N-terminal domain of the chemokine CCL5/regulated upon activation normal T cell expressed and secreted (RANTES) has been shown to be critical for its biological activity on leukocytes. Several N-terminus-modified CCL5/RANTES derivatives, such as N-Terminal truncated CCL5/RANTES, Met-RANTES, and amino-oxypentane (A...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-006-0133-2

    authors: Capoulade-Métay C,Ayouba A,Kfutwah A,Lole K,Pêtres S,Dudoit Y,Deterre P,Menu E,Barré-Sinoussi F,Debré P,Theodorou I

    更新日期:2006-07-01 00:00:00

  • The research of W.E. Mayer (1953-2012): a spectrum of immune systems.

    abstract::Over a period of some 20 years, Werner Eugen Mayer played a significant role in establishing a framework for molecular studies of Mhc genes in multiple vertebrates. His work largely concerned gene isolation, sequencing, and related bioinformatic analyses both for the Mhc and for immune system genes of about 200 specie...

    journal_title:Immunogenetics

    pub_type: 传,历史文章,杂志文章,评审

    doi:10.1007/s00251-012-0654-9

    authors: O'hUigin C

    更新日期:2012-12-01 00:00:00

  • A genetic analysis of natural resistance to nonsyngeneic cells: the role of H-2.

    abstract::The genetic control of natural resistance in vivo to four natural killer (NK) cell-resistant H-2 homozygous lymphoid tumor cell lines was investigated by following the survival and organ distribution of cells prelabeled with radioactive iododeoxyuridine. Backcross mice derived from DBA/2J and CBA/J parents were inject...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00364210

    authors: Carlson GA,Taylor BA,Marshall ST,Greenberg AH

    更新日期:1984-01-01 00:00:00

  • Biochemical characterization of mIgM- variants of the murine B-cell lymphoma, WEHI 279.1.

    abstract::The membrane immunoglobulin M (mIgM) of a B lymphocyte serves as a receptor for its cognate antigen. Our aim is to elucidate the structure and function of this membrane-bound receptor. The first step is to determine the requirements for proper membrane placement of IgM. We have used mIgM-positive B lymphocyte tumors f...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00364758

    authors: Sibley CH,Andrews-Wagner R

    更新日期:1983-01-01 00:00:00

  • The H-2dm1 mutation and Qa antigens.

    abstract::The effect of the H-2dm1 mutation on Qa-m2 expression was examined. The mutant strain B10.D2-H-2dm1 showed a fourfold increase in Qa-m2 expression when compared with the parental strain B10.D2. Qa-m2 molecules immunoprecipitated from B10.D2-H-2dm1, C57BL/10, and B10.D2 spleen cells were identical by two-dimensional (2...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00345969

    authors: Hogarth PM,Walker ID,Rigby AJ,McKenzie IF

    更新日期:1983-01-01 00:00:00

  • "Natural" antibodies to chicken MHC antigens are present in mice, rats, humans, alligators and allogeneic chickens.

    abstract::In the absence of any deliberate immunization, mice, rats, humans and alligators all have detectable titers of antibody against chicken red blood cells (CRBC's). Remarkably, this antibody is directed predominantly against private or public determinants of MHC proteins on the CRBC's, and little or no antibody is direct...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF01567795

    authors: Longenecker BM,Mosmann TR

    更新日期:1980-01-01 00:00:00

  • A revised leopard frog phylogeny allows a more detailed examination of adaptive evolution at ranatuerin-2 antimicrobial peptide loci.

    abstract::Ranatuerins are antimicrobial peptides of the innate immune system found in ranid frogs. We previously presented evidence that a positive selective sweep had fixed a single allele at the Ranatuerin2 locus in the northern leopard frog (Rana pipiens). In this paper, we further investigate the evolutionary history of ran...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/s00251-010-0430-7

    authors: Tennessen JA,Blouin MS

    更新日期:2010-05-01 00:00:00

  • Two genes controlling acute phase responses by the antitumor polysacch aride, lentinan.

    abstract::Lentinan, a beta-1,6;1,3-glucan, is tumor-specific for transplantable mouse solid-type tumors and it also stimulates the production of acute phase proteins (APPs). The APP response to lentinan is of the delayed type (DT-APR) and differs from that to lipopolysaccharide, which is acute. We found that the responses were ...

    journal_title:Immunogenetics

    pub_type: 杂志文章

    doi:10.1007/BF00587302

    authors: Maeda YY,Takahama S,Kohara Y,Yonekawa H

    更新日期:1996-01-01 00:00:00