Mutations in E2-PePHD, NS5A-PKRBD, NS5A-ISDR, and NS5A-V3 of hepatitis C virus genotype 1 and their relationships to pegylated interferon-ribavirin treatment responses.

Abstract:

:Mutations in several subgenomic regions of hepatitis C virus (HCV) have been implicated in influencing the response to interferon (IFN) therapy. Sequences within HCV NS5A (PKR binding domain [PKRBD], IFN sensitivity-determining region [ISDR], and variable region 3 [V3]) were analyzed for the pretreatment serum samples of 60 HCV genotype 1-infected patients treated with pegylated IFN plus ribavirin (1b, n = 47; 1a, n = 13) but with different treatment outcomes, those with sustained virologic responses (SVR; n = 36) or nonresponders (NR; n = 24). Additionally, the sequence of the PKR/eIF-2alpha phosphorylation homology domain (E2-PePHD) region was determined for 23 patients (11 SVR and 12 NR). The presence of > 4 mutations in the PKRBD region was associated with SVR (P = 0.001) and early virologic responses (EVR; 12 weeks) (P = 0.037) but not rapid virologic responses (4 weeks). In the ISDR, the difference was almost statistically significant (68% of SVR patients with mutations versus 45% without mutations; P = 0.07). The V3 region had a very high genetic variability, but this was not related to SVR. Finally, the E2-PePHD (n = 23) region was well conserved. The presence of > 4 mutations in the PKRBD region (odds ratio [OR] = 9.9; P = 0.006) and an age of < or = 40 years (OR = 3.2; P = 0.056) were selected in a multivariate analysis as predictive factors of SVR. NS5A sequences from serum samples taken after 1 month of treatment and posttreatment were examined for 3 SVR and 15 NR patients to select treatment-resistant viral subpopulations, and it was found that in the V3 and flanking regions, the mutations increased significantly in posttreatment sera (P = 0.05). The genetic variability in the PKRBD (> 4 mutations) is a predictive factor of SVR and EVR in HCV genotype 1 patients treated with pegylated IFN and ribavirin.

journal_name

J Virol

journal_title

Journal of virology

authors

Muñoz de Rueda P,Casado J,Patón R,Quintero D,Palacios A,Gila A,Quiles R,León J,Ruiz-Extremera A,Salmerón J

doi

10.1128/JVI.02231-07

subject

Has Abstract

pub_date

2008-07-01 00:00:00

pages

6644-53

issue

13

eissn

0022-538X

issn

1098-5514

pii

JVI.02231-07

journal_volume

82

pub_type

杂志文章
  • Isolation and properties of Moloney murine leukemia virus mutants: use of a rapid assay for release of virion reverse transcriptase.

    abstract::A rapid assay for retroviral reverse transcriptase activity released into the culture medium by infected cells was developed. With the assay, 4,000 clonally infected cell lines could be tested in a few hours. We have adapted the assay for use as a screen for the detection of spontaneous viral mutants. Mutants of Molon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.38.1.239-248.1981

    authors: Goff S,Traktman P,Baltimore D

    更新日期:1981-04-01 00:00:00

  • Mapping the in vivo arrangement of nucleosomes on simian virus 40 chromatin by the photoaddition of radioactive hydroxymethyltrimethylpsoralen.

    abstract::Intracellular simian virus 40 (SV40) chromatin was photoreacted with a 3H-labeled psoralen derivative, hydroxymethyltrimethylpsoralen (HMT), at 48 h postinfection. Psoralen compounds have been shown to readily penetrate intact cells and, in the presence of long-wavelength UV light, form covalent adducts to DNA, prefer...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.41.1.78-87.1982

    authors: Robinson GW,Hallick LM

    更新日期:1982-01-01 00:00:00

  • Metagenomic analysis of the viral flora of pine marten and European badger feces.

    abstract::A thorough understanding of the diversity of viruses in wildlife provides epidemiological baseline information about potential pathogens. Metagenomic analysis of the enteric viral flora revealed a new anellovirus and bocavirus species in pine martens and a new circovirus-like virus and geminivirus-related DNA virus in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.06373-11

    authors: van den Brand JM,van Leeuwen M,Schapendonk CM,Simon JH,Haagmans BL,Osterhaus AD,Smits SL

    更新日期:2012-02-01 00:00:00

  • Inflammatory monocytes recruited to the liver within 24 hours after virus-induced inflammation resemble Kupffer cells but are functionally distinct.

    abstract:UNLABELLED:Due to a scarcity of immunocompetent animal models for viral hepatitis, little is known about the early innate immune responses in the liver. In various hepatotoxic models, both pro- and anti-inflammatory activities of recruited monocytes have been described. In this study, we compared the effect of liver in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03733-14

    authors: Movita D,van de Garde MD,Biesta P,Kreefft K,Haagmans B,Zuniga E,Herschke F,De Jonghe S,Janssen HL,Gama L,Boonstra A,Vanwolleghem T

    更新日期:2015-05-01 00:00:00

  • Herpes simplex virus capsids assembled in insect cells infected with recombinant baculoviruses: structural authenticity and localization of VP26.

    abstract::Recently, recombinant baculoviruses have been used to show that expression of six herpes simplex virus type 1 genes results in the formation of capsid-like particles. We have applied cryoelectron microscopy and three-dimensional image reconstruction to establish their structural authenticity to a resolution of approxi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.11.7362-7366.1995

    authors: Trus BL,Homa FL,Booy FP,Newcomb WW,Thomsen DR,Cheng N,Brown JC,Steven AC

    更新日期:1995-11-01 00:00:00

  • The major phosphorylation sites of the respiratory syncytial virus phosphoprotein are dispensable for virus replication in vitro.

    abstract::The phosphoprotein (P protein) of respiratory syncytial virus (RSV) is a key component of the viral RNA-dependent RNA polymerase complex. The protein is constitutively phosphorylated at the two clusters of serine residues (116, 117, and 119 [116/117/119] and 232 and 237 [232/237]). To examine the role of phosphorylati...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.21.10776-10784.2002

    authors: Lu B,Ma CH,Brazas R,Jin H

    更新日期:2002-11-01 00:00:00

  • Activation of the tumor-specific death effector apoptin and its kinase by an N-terminal determinant of simian virus 40 large T antigen.

    abstract::Apoptin, a viral death protein derived from chicken anemia virus, displays a number of tumor-specific behaviors. In particular, apoptin is phosphorylated, translocates to the nucleus, and induces apoptosis specifically in tumor or transformed cells, whereas it is nonphosphorylated and remains primarily inactive in the...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.18.9965-9976.2004

    authors: Zhang YH,Kooistra K,Pietersen A,Rohn JL,Noteborn MH

    更新日期:2004-09-01 00:00:00

  • Benefits and Perils of Necroptosis in Influenza Virus Infection.

    abstract::Influenza A viruses (IAV) are lytic viruses that have recently been found to activate necroptosis in many of the cell types they infect. Necroptotic cell death is potently immunogenic and limits IAV spread by directly eliminating infected cells and by mobilizing both innate and adaptive immune responses. The benefits ...

    journal_title:Journal of virology

    pub_type: 杂志文章,评审

    doi:10.1128/JVI.01101-19

    authors: Balachandran S,Rall GF

    更新日期:2020-04-16 00:00:00

  • Analysis of DNA sequences which regulate the transcription of a herpes simplex virus immediate early gene.

    abstract::The locations and functions of DNA sequences involved in transcription of the gene encoding herpes simplex virus type 1 immediate early (IE) mRNAs 4 and 5 were analyzed by use of a transient-expression assay. The region upstream of the genes encoding IE mRNAs 4 and 5 was fused to the thymidine kinase gene coding seque...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.50.3.708-716.1984

    authors: Preston CM,Cordingley MG,Stow ND

    更新日期:1984-06-01 00:00:00

  • Molecular cloning of proviral DNA and structural analysis of the transduced myc oncogene of avian oncovirus CMII.

    abstract::Molecularly cloned proviral DNA of avian oncogenic retrovirus CMII was isolated by screening a genomic library of a CMII-transformed quail cell line with a myc-specific probe. On a 10.4-kilobase EcoRI fragment, the cloned DNA contained 4.4 kilobases of CMII proviral sequences extending from the 5' long terminal repeat...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.54.2.576-585.1985

    authors: Walther N,Lurz R,Patschinsky T,Jansen HW,Bister K

    更新日期:1985-05-01 00:00:00

  • Signal peptidase cleavage at the flavivirus C-prM junction: dependence on the viral NS2B-3 protease for efficient processing requires determinants in C, the signal peptide, and prM.

    abstract::Signal peptidase cleavage at the C-prM junction in the flavivirus structural polyprotein is inefficient in the absence of the cytoplasmic viral protease, which catalyzes cleavage at the COOH terminus of the C protein. The signal peptidase cleavage occurs efficiently in circumstances where the C protein is deleted or i...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.3.2141-2149.1998

    authors: Stocks CE,Lobigs M

    更新日期:1998-03-01 00:00:00

  • Antigenic analysis of equine infectious anemia virus (EIAV) variants by using monoclonal antibodies: epitopes of glycoprotein gp90 of EIAV stimulate neutralizing antibodies.

    abstract::Monoclonal antibodies produced against the prototype cell-adapted Wyoming strain of equine infectious anemia virus (EIAV), a lentivirus, were studied for reactivity with the homologous prototype and 16 heterologous isolates. Eighteen hybridomas producing monoclonal antibodies (MAbs) were isolated. Western blot (immuno...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.10.2956-2961.1987

    authors: Hussain KA,Issel CJ,Schnorr KL,Rwambo PM,Montelaro RC

    更新日期:1987-10-01 00:00:00

  • Sendai virus targets inflammatory responses, as well as the interferon-induced antiviral state, in a multifaceted manner.

    abstract::We have used cDNA arrays to compare the activation of various cellular genes in response to infection with Sendai viruses (SeV) that contain specific mutations. Three groups of cellular genes activated by mutant SeV infection, but not by wild-type SeV, were identified in this way. While some of these genes are well kn...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.14.7903-7913.2003

    authors: Strähle L,Garcin D,Le Mercier P,Schlaak JF,Kolakofsky D

    更新日期:2003-07-01 00:00:00

  • Human immunodeficiency virus type 1 gp120 induces anergy in human peripheral blood lymphocytes by inducing interleukin-10 production.

    abstract::The effects of recombinant gp120 on the proliferative responses and cytokine production by normal peripheral blood mononuclear cells (PBMC) were investigated. gp120 inhibited in a dose-dependent fashion the anti-CD3 monoclonal antibody (MAb)- and concanavalin A-induced proliferative responses. The production of interl...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.8.4953-4960.1996

    authors: Schols D,De Clercq E

    更新日期:1996-08-01 00:00:00

  • O-linked glycosylation of retroviral envelope gene products.

    abstract::Treatment of [3H]glucosamine-labeled Friend mink cell focus-forming virus (FrMCF) gp70 with excess peptide:N-glycanase F (PNGase F) resulted in removal of the expected seven N-linked oligosaccharide chains; however, approximately 10% of the glucosamine label was retained in the resulting 49,000-Mr (49K) product. For [...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.3.1016-1021.1988

    authors: Pinter A,Honnen WJ

    更新日期:1988-03-01 00:00:00

  • Human monoclonal antibodies to pandemic 1957 H2N2 and pandemic 1968 H3N2 influenza viruses.

    abstract::Investigation of the human antibody response to the 1957 pandemic H2N2 influenza A virus has been largely limited to serologic studies. We generated five influenza virus hemagglutinin (HA)-reactive human monoclonal antibodies (MAbs) by hybridoma technology from the peripheral blood of healthy donors who were born betw...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.07158-11

    authors: Krause JC,Tsibane T,Tumpey TM,Huffman CJ,Albrecht R,Blum DL,Ramos I,Fernandez-Sesma A,Edwards KM,García-Sastre A,Basler CF,Crowe JE Jr

    更新日期:2012-06-01 00:00:00

  • Herpes simplex virus ICP0 mutants are hypersensitive to interferon.

    abstract::Interferon (IFN) is an important immune system molecule capable of inducing an antiviral state within cells. Herpes simplex virus type 1 (HSV-1) replication is somewhat reduced in tissue culture in the presence of IFN, presumably due to decreased viral transcription. Here, we show mutations that inactivate immediate-e...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.4.2052-2056.2000

    authors: Mossman KL,Saffran HA,Smiley JR

    更新日期:2000-02-01 00:00:00

  • Non-macrophage-tropic human immunodeficiency virus type 1 R5 envelopes predominate in blood, lymph nodes, and semen: implications for transmission and pathogenesis.

    abstract::Human immunodeficiency virus type 1 (HIV-1) R5 isolates that predominantly use CCR5 as a coreceptor are frequently described as macrophage tropic. Here, we compare macrophage tropism conferred by HIV-1 R5 envelopes that were derived directly by PCR from patient tissue. This approach avoids potentially selective cultur...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02328-05

    authors: Peters PJ,Sullivan WM,Duenas-Decamp MJ,Bhattacharya J,Ankghuambom C,Brown R,Luzuriaga K,Bell J,Simmonds P,Ball J,Clapham PR

    更新日期:2006-07-01 00:00:00

  • Dynamics of Evolution of Poliovirus Neutralizing Antigenic Sites and Other Capsid Functional Domains during a Large and Prolonged Outbreak.

    abstract::We followed the dynamics of capsid amino acid replacement among 403 Nigerian outbreak isolates of type 2 circulating vaccine-derived poliovirus (cVDPV2) from 2005 through 2011. Four different functional domains were analyzed: (i) neutralizing antigenic (NAg) sites, (ii) residues binding the poliovirus receptor (PVR), ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01949-17

    authors: Shaw J,Jorba J,Zhao K,Iber J,Chen Q,Adu F,Adeniji A,Bukbuk D,Baba M,Henderson E,Dybdahl-Sissoko N,McDonald S,Weldon WC,Gumede N,Oberste MS,Kew OM,Burns CC

    更新日期:2018-04-13 00:00:00

  • Initial B-cell responses to transmitted human immunodeficiency virus type 1: virion-binding immunoglobulin M (IgM) and IgG antibodies followed by plasma anti-gp41 antibodies with ineffective control of initial viremia.

    abstract::A window of opportunity for immune responses to extinguish human immunodeficiency virus type 1 (HIV-1) exists from the moment of transmission through establishment of the latent pool of HIV-1-infected cells. A critical time to study the initial immune responses to the transmitted/founder virus is the eclipse phase of ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01708-08

    authors: Tomaras GD,Yates NL,Liu P,Qin L,Fouda GG,Chavez LL,Decamp AC,Parks RJ,Ashley VC,Lucas JT,Cohen M,Eron J,Hicks CB,Liao HX,Self SG,Landucci G,Forthal DN,Weinhold KJ,Keele BF,Hahn BH,Greenberg ML,Morris L,Karim S

    更新日期:2008-12-01 00:00:00

  • Structure and expression of mobile ETnII retroelements and their coding-competent MusD relatives in the mouse.

    abstract::ETnII elements are mobile members of the repetitive early transposon family of mouse long terminal repeat (LTR) retroelements and have caused a number of mutations by inserting into genes. ETnII sequences lack retroviral genes, but the recent discovery of related MusD retroviral elements with regions similar to gag, p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.21.11448-11458.2003

    authors: Baust C,Gagnier L,Baillie GJ,Harris MJ,Juriloff DM,Mager DL

    更新日期:2003-11-01 00:00:00

  • Identification and zinc dependence of the bovine herpesvirus 1 transactivator protein BICP0.

    abstract::Bovine herpesvirus 1 (BHV-1) specifies and unspliced early 2.6-kb RNA (ER2.6) which is 3' coterminal with exon 2 of the 2.9-kb immediate-early (IE) RNA. The two transcripts have a common open reading frame (676 codons). The predicted protein, designated BHV-1 infected cell protein 0 (BICP0), contains a zinc finger dom...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.68.5.3154-3162.1994

    authors: Fraefel C,Zeng J,Choffat Y,Engels M,Schwyzer M,Ackermann M

    更新日期:1994-05-01 00:00:00

  • Keratinocytes are cell targets of West Nile virus in vivo.

    abstract::West Nile virus (WNV) replicates in the skin; however, cell targets in the skin have not been identified. In the current studies, WNV infected the epidermis and adnexal glands of mouse skin, and the epidermal cells were identified as keratinocytes by double labeling for WNV antigen and keratin 10. Inoculation of mice ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02692-10

    authors: Lim PY,Behr MJ,Chadwick CM,Shi PY,Bernard KA

    更新日期:2011-05-01 00:00:00

  • Deer Prion Proteins Modulate the Emergence and Adaptation of Chronic Wasting Disease Strains.

    abstract:UNLABELLED:Transmission of chronic wasting disease (CWD) between cervids is influenced by the primary structure of the host cellular prion protein (PrP(C)). In white-tailed deer, PRNP alleles encode the polymorphisms Q95 G96 (wild type [wt]), Q95 S96 (referred to as the S96 allele), and H95 G96 (referred to as the H95 ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02010-15

    authors: Duque Velásquez C,Kim C,Herbst A,Daude N,Garza MC,Wille H,Aiken J,McKenzie D

    更新日期:2015-12-01 00:00:00

  • Replication of hepatitis A viruses with chimeric 5' nontranslated regions.

    abstract::The role of the 5' nontranslated region in the replication of hepatitis A virus (HAV) was studied by analyzing the translation and replication of chimeric RNAs containing the encephalomyocarditis virus (EMCV) internal ribosome entry segment (IRES) and various lengths (237, 151, or 98 nucleotides [nt]) of the 5'-termin...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.5.2861-2868.1996

    authors: Jia XY,Tesar M,Summers DF,Ehrenfeld E

    更新日期:1996-05-01 00:00:00

  • Comparison of the restriction endonuclease maps of unintegrated proviral DNAs from four xenotropic murine leukemia viruses.

    abstract::From purified linear and superhelical DNAs, the restriction endonuclease maps of four xenotropic murine leukemia virus DNAs from NFS, NZB, BALB/c, and AKR mice were determined with ten restriction endonucleases. Each xenotropic proviral DNA was found to be a unique restriction endonuclease map, with differences in the...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.40.3.963-970.1981

    authors: Joseph DR

    更新日期:1981-12-01 00:00:00

  • Kaposi's sarcoma-associated herpesvirus encodes a functional cyclin.

    abstract::Kaposi's sarcoma-associated herpesvirus (KSHV) (also called human herpesvirus 8) is consistently found in Kaposi's sarcoma lesions and in body-cavity-based lymphomas. A 17-kb KSHV lambda clone was obtained directly from a Kaposi's sarcoma lesion. DNA sequence analysis of this clone identified an open reading frame whi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.3.1984-1991.1997

    authors: Li M,Lee H,Yoon DW,Albrecht JC,Fleckenstein B,Neipel F,Jung JU

    更新日期:1997-03-01 00:00:00

  • Increased immunogenicity of human immunodeficiency virus gp120 engineered to express Galalpha1-3Galbeta1-4GlcNAc-R epitopes.

    abstract::The glycan shield comprised of multiple carbohydrate chains on the human immunodeficiency virus (HIV) envelope glycoprotein gp120 helps the virus to evade neutralizing antibodies. The present study describes a novel method for increasing immunogenicity of gp120 vaccine by enzymatic replacement of sialic acid on these ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00310-06

    authors: Abdel-Motal U,Wang S,Lu S,Wigglesworth K,Galili U

    更新日期:2006-07-01 00:00:00

  • Restriction of Human Cytomegalovirus Replication by ISG15, a Host Effector Regulated by cGAS-STING Double-Stranded-DNA Sensing.

    abstract::Accumulation of the interferon-stimulated gene 15 (ISG15) protein product, which is reversibly conjugated to numerous polypeptide targets, impacts the proteome and physiology of uninfected and infected cells. While many viruses, including human cytomegalovirus (HCMV), blunt host antiviral defenses by limiting ISG expr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02483-16

    authors: Bianco C,Mohr I

    更新日期:2017-04-13 00:00:00

  • The Epstein-Barr virus BMRF1 gene is essential for lytic virus replication.

    abstract::The Epstein-Barr virus (EBV) BMRF1 protein is a DNA polymerase processivity factor. We have deleted the BMRF1 open reading frame from the EBV genome and assessed the DeltaBMRF1 EBV phenotype. DeltaBMRF1 viruses were replication deficient, but the wild-type phenotype could be restored by BMRF1 trans-complementation. Th...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.80.10.5078-5081.2006

    authors: Neuhierl B,Delecluse HJ

    更新日期:2006-05-01 00:00:00