Exploring the Balance between DNA Pressure and Capsid Stability in Herpesviruses and Phages.

Abstract:

UNLABELLED:We have recently shown in both herpesviruses and phages that packaged viral DNA creates a pressure of tens of atmospheres pushing against the interior capsid wall. For the first time, using differential scanning microcalorimetry, we directly measured the energy powering the release of pressurized DNA from the capsid. Furthermore, using a new calorimetric assay to accurately determine the temperature inducing DNA release, we found a direct influence of internal DNA pressure on the stability of the viral particle. We show that the balance of forces between the DNA pressure and capsid strength, required for DNA retention between rounds of infection, is conserved between evolutionarily diverse bacterial viruses (phages λ and P22), as well as a eukaryotic virus, human herpes simplex 1 (HSV-1). Our data also suggest that the portal vertex in these viruses is the weakest point in the overall capsid structure and presents the Achilles heel of the virus's stability. Comparison between these viral systems shows that viruses with higher DNA packing density (resulting in higher capsid pressure) have inherently stronger capsid structures, preventing spontaneous genome release prior to infection. This force balance is of key importance for viral survival and replication. Investigating the ways to disrupt this balance can lead to development of new mutation-resistant antivirals. IMPORTANCE:A virus can generally be described as a nucleic acid genome contained within a protective protein shell, called the capsid. For many double-stranded DNA viruses, confinement of the large DNA molecule within the small protein capsid results in an energetically stressed DNA state exerting tens of atmospheres of pressures on the inner capsid wall. We show that stability of viral particles (which directly relates to infectivity) is strongly influenced by the state of the packaged genome. Using scanning calorimetry on a bacterial virus (phage λ) as an experimental model system, we investigated the thermodynamics of genome release associated with destabilizing the viral particle. Furthermore, we compare the influence of tight genome confinement on the relative stability for diverse bacterial and eukaryotic viruses. These comparisons reveal an evolutionarily conserved force balance between the capsid stability and the density of the packaged genome.

journal_name

J Virol

journal_title

Journal of virology

authors

Bauer DW,Li D,Huffman J,Homa FL,Wilson K,Leavitt JC,Casjens SR,Baines J,Evilevitch A

doi

10.1128/JVI.01172-15

subject

Has Abstract

pub_date

2015-09-01 00:00:00

pages

9288-98

issue

18

eissn

0022-538X

issn

1098-5514

pii

JVI.01172-15

journal_volume

89

pub_type

杂志文章
  • 25-Hydroxycholesterol Production by the Cholesterol-25-Hydroxylase Interferon-Stimulated Gene Restricts Mammalian Reovirus Infection.

    abstract::Following the initial detection of viral infection, innate immune responses trigger the induction of numerous interferon-stimulated genes (ISGs) to inhibit virus replication and dissemination. One such ISG encodes cholesterol-25-hydroxylase (CH25H), an enzyme that catalyzes the oxidation of cholesterol to form a solub...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01047-18

    authors: Doms A,Sanabria T,Hansen JN,Altan-Bonnet N,Holm GH

    更新日期:2018-08-29 00:00:00

  • Permanent cell lines that show temperature-dependent expression of adenovirus virus-associated RNA.

    abstract::Temperature-sensitive COS cells, clone E540, have been stably transformed at a restrictive temperature with plasmid pVA1, which contains the adenovirus type 5 virus-associated (VA) genes in addition to the Neor marker. Transformed cell clones, named EVA cells, contained adenovirus DNA in an integrated form while grown...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.12.5445-5450.1989

    authors: Martínez C,de la Luna S,Peláez F,Lopez-Turiso A,Valcárcel J,de Haro C,Ortín J

    更新日期:1989-12-01 00:00:00

  • Juxtaposition between activation and basic domains of human immunodeficiency virus type 1 Tat is required for optimal interactions between Tat and TAR.

    abstract::trans activation of the human immunodeficiency virus type 1 long terminal repeat requires that the viral trans activator Tat interact with the trans-acting responsive region (TAR) RNA. Although the N-terminal 47 amino acids represent an independent activation domain that functions via heterologous nucleic acid-binding...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.6.3441-3445.1993

    authors: Luo Y,Peterlin BM

    更新日期:1993-06-01 00:00:00

  • The murine CAR homolog is a receptor for coxsackie B viruses and adenoviruses.

    abstract::Complementary DNA clones encoding the murine homolog (mCAR) of the human coxsackievirus and adenovirus receptor (CAR) were isolated. Nonpermissive CHO cells transfected with mCAR cDNA became susceptible to infection by coxsackieviruses B3 and B4 and showed increased susceptibility to adenovirus-mediated gene transfer....

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.1.415-419.1998

    authors: Bergelson JM,Krithivas A,Celi L,Droguett G,Horwitz MS,Wickham T,Crowell RL,Finberg RW

    更新日期:1998-01-01 00:00:00

  • Herpesvirus proteins: induction of nucleoside phosphotransferase activity after herpes simplex virus infection.

    abstract::After herpes simplex virus infection of hamster kidney cells there is an induction of nucleoside phosphotransferase activity which can utilize AMP as phosphate donor. The activity is immunologically specific for the infected cell and is induced concomitantly with the virus-coded pyrimidine deoxynucleoside kinase activ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.17.3.1056-1059.1976

    authors: Jamieson AT,Hay J,Subak-Sharpe JH

    更新日期:1976-03-01 00:00:00

  • Molecularly cloned SHIV-1157ipd3N4: a highly replication- competent, mucosally transmissible R5 simian-human immunodeficiency virus encoding HIV clade C Env.

    abstract::Human immunodeficiency virus type 1 (HIV-1) clade C causes >50% of all HIV infections worldwide, and an estimated 90% of all transmissions occur mucosally with R5 strains. A pathogenic R5 simian-human immunodeficiency virus (SHIV) encoding HIV clade C env is highly desirable to evaluate candidate AIDS vaccines in nonh...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00558-06

    authors: Song RJ,Chenine AL,Rasmussen RA,Ruprecht CR,Mirshahidi S,Grisson RD,Xu W,Whitney JB,Goins LM,Ong H,Li PL,Shai-Kobiler E,Wang T,McCann CM,Zhang H,Wood C,Kankasa C,Secor WE,McClure HM,Strobert E,Else JG,Ruprecht R

    更新日期:2006-09-01 00:00:00

  • Human immunodeficiency virus type 1 is trapped by acidic but not by neutralized human cervicovaginal mucus.

    abstract::To reliably infect a primate model for human immunodeficiency virus (HIV), approximately 10,000-fold more virus must be delivered vaginally than intravenously. However, the vaginal mechanisms that help protect against HIV are poorly understood. Here, we report that human cervicovaginal mucus (CVM), obtained from donor...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01899-08

    authors: Lai SK,Hida K,Shukair S,Wang YY,Figueiredo A,Cone R,Hope TJ,Hanes J

    更新日期:2009-11-01 00:00:00

  • Human papillomavirus type 16 E5 protein induces expression of beta interferon through interferon regulatory factor 1 in human keratinocytes.

    abstract::Crucial steps in high-risk human papillomavirus (HR-HPV)-related carcinogenesis are the integration of HR-HPV into the host genome and loss of viral episomes. The mechanisms that promote cervical neoplastic progression are, however, not clearly understood. During HR-HPV infection, the HPV E5 protein is expressed in pr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02114-10

    authors: Muto V,Stellacci E,Lamberti AG,Perrotti E,Carrabba A,Matera G,Sgarbanti M,Battistini A,Liberto MC,Focà A

    更新日期:2011-05-01 00:00:00

  • High recombination rate of an Epstein-Barr virus-simian virus 40 hybrid shuttle vector in human cells.

    abstract::The stability of an Epstein-Barr virus (EBV)-simian virus 40 (SV40) hybrid shuttle vector, the p205-GTI plasmid, was analyzed in human cells during EBV- or SV40-type replication mode. When the p205-GTI plasmid was maintained as an episomal EBV vector in the human 293 cell line, no rearrangement was detected. To induce...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.9.3837-3843.1989

    authors: Stary A,James MR,Sarasin A

    更新日期:1989-09-01 00:00:00

  • Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E.

    abstract::The human immunodeficiency virus type 1 (HIV-1) epidemic in Southeast Asia has been largely due to the emergence of clade E (HIV-1E). It has been suggested that HIV-1E is derived from a recombinant lineage of subtype A (HIV-1A) and subtype E, with multiple breakpoints along the E genome. We obtained complete genome se...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.22.10752-10765.2000

    authors: Anderson JP,Rodrigo AG,Learn GH,Madan A,Delahunty C,Coon M,Girard M,Osmanov S,Hood L,Mullins JI

    更新日期:2000-11-01 00:00:00

  • Blockade of PD-1 and LAG-3 Immune Checkpoints Combined with Vaccination Restores the Function of Antiviral Tissue-Resident CD8+ TRM Cells and Reduces Ocular Herpes Simplex Infection and Disease in HLA Transgenic Rabbits.

    abstract::Chronic viruses such as herpes simplex virus 1 (HSV-1) evade the hosts' immune system by inducing the exhaustion of antiviral T cells. In the present study, we found that exhausted HSV-specific CD8+ T cells, with elevated expression of programmed death ligand-1 (PD-1) and lymphocyte activation gene-3 (LAG-3) receptors...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00827-19

    authors: Roy S,Coulon PG,Prakash S,Srivastava R,Geertsema R,Dhanushkodi N,Lam C,Nguyen V,Gorospe E,Nguyen AM,Salazar S,Alomari NI,Warsi WR,BenMohamed L

    更新日期:2019-08-28 00:00:00

  • Inhibition of antigen-induced and interleukin-2-induced proliferation of bovine peripheral blood leukocytes by inactivated bovine herpes virus 1.

    abstract::The mechanism by which bovine herpesvirus 1 (BHV-1) predisposes cattle to bacterial pneumonia was investigated by using an in vitro system to demonstrate immunosuppression. At a multiplicity of infection of 0.001, live or inactivated BHV-1 induced a 50% inhibition of the proliferative response of peripheral blood mono...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.9.4146-4151.1990

    authors: Hutchings DL,Campos M,Qualtiere L,Babiuk LA

    更新日期:1990-09-01 00:00:00

  • Mutations in classical swine fever virus NS4B affect virulence in swine.

    abstract::NS4B is one of the nonstructural proteins of classical swine fever virus (CSFV), the etiological agent of a severe, highly lethal disease of swine. Protein domain analysis of the predicted amino acid sequence of the NS4B protein of highly pathogenic CSFV strain Brescia (BICv) identified a putative Toll/interleukin-1 r...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02050-09

    authors: Fernandez-Sainz I,Gladue DP,Holinka LG,O'Donnell V,Gudmundsdottir I,Prarat MV,Patch JR,Golde WT,Lu Z,Zhu J,Carrillo C,Risatti GR,Borca MV

    更新日期:2010-02-01 00:00:00

  • Efficient replication of human immunodeficiency virus type 1 in resting CD4+ T lymphocytes is induced by coculture with autologous dendritic cells in the absence of foreign antigens.

    abstract::Dendritic cells (DC) are considered to be important contributors to human immunodeficiency virus type 1 (HIV-1) transmission and pathogenesis. As the first target cells in mucosal tissues, they can be become productively infected and can also capture virions and transfer them efficiently to CD4(+) T cells located with...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01420-08

    authors: Barat C,Gilbert C,Tremblay MJ

    更新日期:2009-03-01 00:00:00

  • Asymptomatic Primary Infection with Epstein-Barr Virus: Observations on Young Adult Cases.

    abstract::Epstein-Barr virus (EBV) is typically acquired asymptomatically in childhood. In contrast, infection later in life often leads to infectious mononucleosis (IM), a febrile illness characterized by anti-EBV IgM antibody positivity, high loads of circulating latently infected B cells, and a marked lymphocytosis caused by...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00382-17

    authors: Abbott RJ,Pachnio A,Pedroza-Pacheco I,Leese AM,Begum J,Long HM,Croom-Carter D,Stacey A,Moss PAH,Hislop AD,Borrow P,Rickinson AB,Bell AI

    更新日期:2017-10-13 00:00:00

  • Characterization of the influenza A virus gene pool in avian species in southern China: was H6N1 a derivative or a precursor of H5N1?

    abstract::In 1997, an H5N1 influenza virus outbreak occurred in chickens in Hong Kong, and the virus was transmitted directly to humans. Because there is limited information about the avian influenza virus reservoir in that region, we genetically characterized virus strains isolated in Hong Kong during the 1997 outbreak. We seq...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.14.6309-6315.2000

    authors: Hoffmann E,Stech J,Leneva I,Krauss S,Scholtissek C,Chin PS,Peiris M,Shortridge KF,Webster RG

    更新日期:2000-07-01 00:00:00

  • Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide.

    abstract::Comparative surface feature analyses of the VP1 sequences of hepatitis A virus (HAV) and poliovirus type 1 allowed an alignment of the two sequences and an identification of probable HAV neutralization antigenic sites. A synthetic peptide containing the HAV-specific amino acid sequence of one of these sites induced an...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.55.3.836-839.1985

    authors: Emini EA,Hughes JV,Perlow DS,Boger J

    更新日期:1985-09-01 00:00:00

  • α4β7+ CD4+ Effector/Effector Memory T Cells Differentiate into Productively and Latently Infected Central Memory T Cells by Transforming Growth Factor β1 during HIV-1 Infection.

    abstract::HIV-1 transmission occurs mainly through mucosal tissues. During mucosal transmission, HIV-1 preferentially infects α4β7+ gut-homing CCR7- CD4+ effector/effector memory T cells (TEM) and results in massive depletion of these cells and other subsets of TEM in gut-associated lymphoid tissues. However, besides being elim...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01510-17

    authors: Cheung KW,Wu T,Ho SF,Wong YC,Liu L,Wang H,Chen Z

    更新日期:2018-03-28 00:00:00

  • Functional contribution of cysteine residues to the human immunodeficiency virus type 1 envelope.

    abstract::Although the envelope gene of human immunodeficiency virus type 1 shows considerable strain variability, cysteine residues of the envelope protein are strongly conserved, suggesting that they are important to the envelope structure. We constructed and analyzed mutants of a biologically active molecular clone of human ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.5.2250-2259.1990

    authors: Tschachler E,Buchow H,Gallo RC,Reitz MS Jr

    更新日期:1990-05-01 00:00:00

  • Increased rate of RNA synthesis: early reaction of primary mouse kidney cells to infection with polyoma virus of simian virus 40.

    abstract::The rate of transcription in isolated nuclei of primary mouse kidney cells increases by a factor of about 1.5 between 5 and 8 h after infection with polyoma virus or simian virus 40. This process requires intact virus and is inhibited by cycloheximide and actinomycin D. It appears to involve the activity of all three ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.35.1.8-19.1980

    authors: Pöckl E,Wintersberger E

    更新日期:1980-07-01 00:00:00

  • Selective Activation of Type II Interferon Signaling by Zika Virus NS5 Protein.

    abstract::Severe complications of Zika virus (ZIKV) infection might be caused by inflammation, but how ZIKV induces proinflammatory cytokines is not understood. In this study, we show opposite regulatory effects of the ZIKV NS5 protein on interferon (IFN) signaling. Whereas ZIKV and its NS5 protein were potent suppressors of ty...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00163-17

    authors: Chaudhary V,Yuen KS,Chan JF,Chan CP,Wang PH,Cai JP,Zhang S,Liang M,Kok KH,Chan CP,Yuen KY,Jin DY

    更新日期:2017-06-26 00:00:00

  • Expression of the Marek's disease virus (MDV) homolog of glycoprotein B of herpes simplex virus by a recombinant baculovirus and its identification as the B antigen (gp100, gp60, gp49) of MDV.

    abstract::A gene encoding a homolog of glycoprotein B of herpes simplex virus (gB homolog) has been identified on the Marek's disease virus (MDV) genome (L. J. N. Ross, M. Sanderson, S. D. Scott, M. M. Binns, T. Doel, and B. Milne, J. Gen. Virol. 70:1789-1804, 1989); however, the molecular and immunological characteristics of t...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.5.2631-2638.1992

    authors: Niikura M,Matsuura Y,Endoh D,Onuma M,Mikami T

    更新日期:1992-05-01 00:00:00

  • Antigenic characterization of type C RNA virus isolates of gibbon apes.

    abstract::Type C RNA viruses initially isolated from a lymphosarcoma of a gibbon ape and from a fibrosarcoma of a woolly monkey are very closely related immunologically. However, recent studies have shown that these viruses are distinguishable in a radioimmunoassay for the 12,000-molecular-weight polypeptide (p12) of the woolly...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.15.1.115-120.1975

    authors: Tronick SR,Stephenson JR,Aaronson SA,Kawakami TG

    更新日期:1975-01-01 00:00:00

  • In vitro and in vivo mutational analysis of the 3'-terminal regions of hepatitis e virus genomes and replicons.

    abstract::Hepatitis E virus (HEV) replication is not well understood, mainly because the virus does not infect cultured cells efficiently. However, Huh-7 cells transfected with full-length genomes produce open reading frame 2 protein, indicative of genome replication (6). To investigate the role of 3'-terminal sequences in RNA ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.2.1017-1026.2005

    authors: Graff J,Nguyen H,Kasorndorkbua C,Halbur PG,St Claire M,Purcell RH,Emerson SU

    更新日期:2005-01-01 00:00:00

  • Rapid tumor formation of human T-cell leukemia virus type 1-infected cell lines in novel NOD-SCID/gammac(null) mice: suppression by an inhibitor against NF-kappaB.

    abstract::We established a novel experimental model for human T-cell leukemia virus type 1 (HTLV-1)-induced tumor using NOD-SCID/gammac(null) (NOG) mice. This model is very useful for investigating the mechanism of tumorigenesis and malignant cell growth of adult T-cell leukemia (ATL)/lymphoma, which still remains unclear. Nine...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.9.5286-5294.2003

    authors: Dewan MZ,Terashima K,Taruishi M,Hasegawa H,Ito M,Tanaka Y,Mori N,Sata T,Koyanagi Y,Maeda M,Kubuki Y,Okayama A,Fujii M,Yamamoto N

    更新日期:2003-05-01 00:00:00

  • In vitro resistance to the human immunodeficiency virus type 1 maturation inhibitor PA-457 (Bevirimat).

    abstract::3-O-(3',3'-dimethylsuccinyl)betulinic acid (PA-457 or bevirimat) potently inhibits human immunodeficiency virus type 1 (HIV-1) maturation by blocking a late step in the Gag processing pathway, specifically the cleavage of SP1 from the C terminus of capsid (CA). To gain insights into the mechanism(s) by which HIV-1 cou...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01369-06

    authors: Adamson CS,Ablan SD,Boeras I,Goila-Gaur R,Soheilian F,Nagashima K,Li F,Salzwedel K,Sakalian M,Wild CT,Freed EO

    更新日期:2006-11-01 00:00:00

  • Adenovirus E4 open reading frame 4 protein autoregulates E4 transcription by inhibiting E1A transactivation of the E4 promoter.

    abstract::Here we show that the adenovirus early region 4 (E4) open reading frame 4 (ORF4) protein autoregulates its own transcription by inhibiting adenovirus E1A-induced activation of E4 transcription both in transient transfection experiments and during lytic virus growth. The inhibitory activity of E4-ORF4 was selective for...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.6.3844-3851.1996

    authors: Bondesson M,Ohman K,Manervik M,Fan S,Akusjärvi G

    更新日期:1996-06-01 00:00:00

  • Herpes simplex virus immediate-early protein ICP22 is required for viral modification of host RNA polymerase II and establishment of the normal viral transcription program.

    abstract::Infection of cells with herpes simplex virus type 1 (HSV-1) results in a rapid alteration of phosphorylation on the large subunit of cellular RNA polymerase II (RNAP II), most likely on its C-terminal domain (S. A. Rice, M. C. Long, V. Lam, C. A. Spencer, J. Virol. 68:988-1001, 1994). This phosphorylation modification...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.9.5550-5559.1995

    authors: Rice SA,Long MC,Lam V,Schaffer PA,Spencer CA

    更新日期:1995-09-01 00:00:00

  • Nipah virus V and W proteins have a common STAT1-binding domain yet inhibit STAT1 activation from the cytoplasmic and nuclear compartments, respectively.

    abstract::In previous reports it was demonstrated that the Nipah virus V and W proteins have interferon (IFN) antagonist activity due to their ability to block signaling from the IFN-alpha/beta receptor (J. J. Rodriguez, J. P. Parisien, and C. M. Horvath, J. Virol. 76:11476-11483, 2002; M. S. Park et al., J. Virol. 77:1501-1511...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.11.5633-5641.2004

    authors: Shaw ML,García-Sastre A,Palese P,Basler CF

    更新日期:2004-06-01 00:00:00

  • MyD88-dependent immune activation mediated by human immunodeficiency virus type 1-encoded Toll-like receptor ligands.

    abstract::Immune activation is a major characteristic of human immunodeficiency virus type 1 (HIV-1) infection and a strong prognostic factor for HIV-1 disease progression. The underlying mechanisms leading to immune activation in viremic HIV-1 infection, however, are not fully understood. Here we show that, following the initi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00421-07

    authors: Meier A,Alter G,Frahm N,Sidhu H,Li B,Bagchi A,Teigen N,Streeck H,Stellbrink HJ,Hellman J,van Lunzen J,Altfeld M

    更新日期:2007-08-01 00:00:00