Horizontal Gene Transfer and Ecosystem Function Dynamics.

Abstract:

:Horizontal gene transfer can provide bacteria with new functions that confer an important competitive advantage, and is therefore likely to affect the dynamics of bacterial ecosystems. Two studies by Wolfe et al. and Bonham et al. prepare the way to study this hypothesis in a model ecosystem with reproducible properties.

journal_name

Trends Microbiol

journal_title

Trends in microbiology

authors

van de Guchte M

doi

10.1016/j.tim.2017.07.002

subject

Has Abstract

pub_date

2017-09-01 00:00:00

pages

699-700

issue

9

eissn

0966-842X

issn

1878-4380

pii

S0966-842X(17)30172-5

journal_volume

25

pub_type

评论,杂志文章
  • The basis of persistent bacterial infections.

    abstract::Selected bacterial pathogens, such as Helicobacter pylori and Mycobacterium tuberculosis, establish persistent infections in mammalian hosts despite activating inflammatory and antimicrobial responses. The strategies used to overcome host defense responses vary with the anatomical location of the infection but often r...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0966-842x(02)00038-0

    authors: Rhen M,Eriksson S,Clements M,Bergström S,Normark SJ

    更新日期:2003-02-01 00:00:00

  • The fungal genus Cochliobolus and toxin-mediated plant disease.

    abstract::Several times in this century, new and sometimes devastating diseases of cereal crops, caused by fungi in the genus Cochliobolus, have suddenly appeared. In many fungal diseases of plants the factors required for pathogenicity are unknown; in contrast, the key elements in each of several Cochliobolus diseases are know...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/0966-842x(93)90019-n

    authors: Panaccione DG

    更新日期:1993-04-01 00:00:00

  • Outbreaks of human monkeypox after cessation of smallpox vaccination.

    abstract::The recent observation of a surge in human monkeypox in the Democratic Republic of the Congo (DRC) prompts the question of whether cessation of smallpox vaccination is driving the phenomenon, and if so, why is re-emergence not universal throughout the historic geographic range of the virus? Research addressing the vir...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2011.12.001

    authors: Reynolds MG,Damon IK

    更新日期:2012-02-01 00:00:00

  • Where and how do anthrax toxins exit endosomes to intoxicate host cells?

    abstract::The role of Bacillus anthracis virulence factors in its pathogenesis has been subjected to intense investigation with the aim of finding novel preventive and therapeutic protocols. Toxins that are endocytosed and act in the cytosol of host cells have a central role in B. anthracis infection. Understanding of anthrax t...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2007.10.003

    authors: Puhar A,Montecucco C

    更新日期:2007-11-01 00:00:00

  • Bacterial (intramembrane-sensing) histidine kinases: signal transfer rather than stimulus perception.

    abstract::Most membrane-anchored histidine kinases (HKs) of bacterial two-component systems (2CSs) contain an extracellular input domain that is thought to be responsible for sensing an environmental cue. By contrast, intramembrane-sensing HKs (IM-HKs) lack a sensory domain and cannot perceive their stimuli directly. Instead, a...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2014.05.006

    authors: Mascher T

    更新日期:2014-10-01 00:00:00

  • Maturation of the [NiFe] hydrogenases.

    abstract::The high degree of similarity that exists between all the [NiFe] hydrogenase operons and the near universality of hydrogen metabolism among microorganisms suggest that the microbial ability to metabolize hydrogen is of great importance and ancient origin. The large number of genes present in these operons, which are m...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0966-842x(01)02009-1

    authors: Casalot L,Rousset M

    更新日期:2001-05-01 00:00:00

  • Viral Carcinogenesis Beyond Malignant Transformation: EBV in the Progression of Human Cancers.

    abstract::Cancer progression begins when malignant cells colonize adjacent sites, and it is characterized by increasing tumor heterogeneity, invasion and dissemination of cancer cells. Clinically, progression is the most relevant stage in the natural history of cancers. A given virus is usually regarded as oncogenic because of ...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2016.03.008

    authors: Elgui de Oliveira D,Müller-Coan BG,Pagano JS

    更新日期:2016-08-01 00:00:00

  • Interferon-induced ISG15 pathway: an ongoing virus-host battle.

    abstract::ISG15 is an interferon (IFN)-induced ubiquitin-like protein that is conjugated to target proteins via the sequential action of three enzymes that are also induced by IFN. Unlike ubiquitin, which is highly conserved, the sequence of ISG15 varies between species. ISG15 conjugation inhibits many viruses, and free (unconj...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2013.01.005

    authors: Zhao C,Collins MN,Hsiang TY,Krug RM

    更新日期:2013-04-01 00:00:00

  • Cohabitation of Leishmania amazonensis and Coxiella burnetii.

    abstract::Intracellular pathogens customize the composition and function of the vacuoles they occupy, and can arrest or distort vacuolar maturation. In doubly infected cells, vacuoles that contain two different parasites can be used to test for exclusionary mechanisms, for expression of vacuolar phenotypes that permit or restri...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/0966-842x(96)10027-5

    authors: Rabinovitch M,Veras PS

    更新日期:1996-04-01 00:00:00

  • The Use and Abuse of LexA by Mobile Genetic Elements.

    abstract::The SOS response is an essential process for responding to DNA damage in bacteria. The expression of SOS genes is under the control of LexA, a global transcription factor that undergoes self-cleavage during stress to allow the expression of DNA repair functions and delay cell division until the damage is rectified. Le...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2016.02.009

    authors: Fornelos N,Browning DF,Butala M

    更新日期:2016-05-01 00:00:00

  • Cell invasion by the vertebrate stages of Plasmodium.

    abstract::Protozoans of the genus Plasmodium are the causative agents of malaria; they have a complex life cycle involving vertebrate and arthropod hosts and have three distinct invasive stages. Although the invasive stages probably invade cells using similar mechanisms, each stage has a different host cell specificity and util...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0966-842x(97)84657-4

    authors: Sinnis P,Sim BK

    更新日期:1997-02-01 00:00:00

  • RIG-I-Like Receptors: One STrEP Forward.

    abstract::RIG-I-like receptors detect cytosolic viral RNA and activate an antiviral innate immune response. A new study employs the one STrEP-purification technique and next generation sequencing to characterize physiological ligands in an infected cell. The view of all three RLRs bound to viral RNAs shows specialization, colla...

    journal_title:Trends in microbiology

    pub_type: 评论,杂志文章

    doi:10.1016/j.tim.2016.05.001

    authors: Lässig C,Hopfner KP

    更新日期:2016-07-01 00:00:00

  • Quantifying Current Events Identifies a Novel Endurance Regulator.

    abstract::In nongrowing microbes, proteome turnover is reduced and identification of newly synthesized, low-abundance proteins is challenging. Babin and colleagues recently utilized bio-orthogonal noncanonical amino acid tagging (BONCAT) to identify actively synthesized proteins in nongrowing Pseudomonas aeruginosa, discovering...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2016.02.014

    authors: Henry TC,Brynildsen MP

    更新日期:2016-05-01 00:00:00

  • The potential impact of coinfection on antimicrobial chemotherapy and drug resistance.

    abstract::Across a range of pathogens, resistance to chemotherapy is a growing problem in both public health and animal health. Despite the ubiquity of coinfection, and its potential effects on within-host biology, the role played by coinfecting pathogens on the evolution of resistance and efficacy of antimicrobial chemotherapy...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2015.05.002

    authors: Birger RB,Kouyos RD,Cohen T,Griffiths EC,Huijben S,Mina MJ,Volkova V,Grenfell B,Metcalf CJE

    更新日期:2015-09-01 00:00:00

  • PIP2: choreographer of actin-adaptor proteins in the HIV-1 dance.

    abstract::The actin cytoskeleton plays a key role during the replication cycle of human immunodeficiency virus-1 (HIV-1). HIV-1 infection is affected by cellular proteins that influence the clustering of viral receptors or the subcortical actin cytoskeleton. Several of these actin-adaptor proteins are controlled by the second m...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2014.03.009

    authors: Rocha-Perugini V,Gordon-Alonso M,Sánchez-Madrid F

    更新日期:2014-07-01 00:00:00

  • Viruses and autoimmune disease--two sides of the same coin?

    abstract::Some viruses have the ability to modulate the development of autoimmune diseases. Virus infections have long been associated with the exacerbation of autoimmune disease, however, there is also evidence that viruses can actually protect against autoimmune disease. Several experimental models have been developed to inve...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s0966-842x(01)02097-2

    authors: Fujinami RS

    更新日期:2001-08-01 00:00:00

  • The Pathogen-Host Interface in Three Dimensions: Correlative FIB/SEM Applications.

    abstract::Pathogens survive and propagate within host cells through a wide array of complex interactions. Tracking the molecular and cellular events by multidimensional fluorescence microscopy has been a widespread tool for research on intracellular pathogens. Through major advancements in 3D electron microscopy, intracellular ...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2018.11.011

    authors: Weiner A,Enninga J

    更新日期:2019-05-01 00:00:00

  • Positive Interactions in the Coral Macro and Microbiome.

    abstract::Researchers now recognize the importance of the coral microbiome, but they often overlook other species that live on corals and influence coral-microbe interactions. These 'interstitial associates' should be incorporated into the metaorganism concept for insights into how facilitations between associates, corals, and ...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2020.02.009

    authors: Ainsworth TD,Renzi JJ,Silliman BR

    更新日期:2020-08-01 00:00:00

  • Bridging the gap between viable but non-culturable and antibiotic persistent bacteria.

    abstract::Microbial dormancy is a widespread phenomenon employed by bacteria to evade environmental threats including antibiotics. This intrinsic mechanism of antibiotic tolerance has drawn special attention to the role of dormancy in human disease, particularly in regards to recurrent infections. Two dormancy states, the viabl...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2014.09.004

    authors: Ayrapetyan M,Williams TC,Oliver JD

    更新日期:2015-01-01 00:00:00

  • Legionella Effectors Explored with INSeq: New Functional Insights.

    abstract::Legionella pneumophila secretes over 300 effector proteins that manipulate host cells. This multiplicity of effectors hampers the characterization of their individual roles. Shames et al. report a new approach to solve the enigma of Legionella effector function by using INSeq to analyse effector functions in the conte...

    journal_title:Trends in microbiology

    pub_type: 评论,杂志文章

    doi:10.1016/j.tim.2018.01.003

    authors: Rolando M,Buchrieser C

    更新日期:2018-03-01 00:00:00

  • Ménage à trois: an evolutionary interplay between human papillomavirus, a tumor, and a woman.

    abstract::Cervical cancer is the third most common cancer in women with human papillomavirus (HPV) being a key etiologic factor of this devastating disease. In this article, we describe modern advances in the genomics and transcriptomics of cervical cancer that led to uncovering the key gene drivers. We also introduce, herein, ...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2014.02.009

    authors: Shulzhenko N,Lyng H,Sanson GF,Morgun A

    更新日期:2014-06-01 00:00:00

  • The Molecular Language of the Cnidarian-Dinoflagellate Symbiosis.

    abstract::The cnidarian-dinoflagellate symbiosis is of huge importance as it underpins the success of coral reefs, yet we know very little about how the host cnidarian and its dinoflagellate endosymbionts communicate with each other to form a functionally integrated unit. Here, we review the current knowledge of interpartner mo...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2020.08.005

    authors: Rosset SL,Oakley CA,Ferrier-Pagès C,Suggett DJ,Weis VM,Davy SK

    更新日期:2020-09-23 00:00:00

  • Health Disparities and the Microbiome.

    abstract::An individual's microbiome is likely to be an important contributor to certain health disparity diseases and conditions. We present a framework to study the role of the microbiome and the multiple factors that are likely to influence differences in disease predisposition, onset, and progression at the individual and p...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2016.08.001

    authors: Findley K,Williams DR,Grice EA,Bonham VL

    更新日期:2016-11-01 00:00:00

  • Capturing cellular machines by systematic screens of protein complexes.

    abstract::Two recent studies have provided the most complete screen for protein complexes in yeast to date, in which partners were identified for approximately half of the proteome. A comparison shows that these two datasets are complementary. In addition, one of the analyses points to a modular organization of the cellular pro...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2006.06.002

    authors: Gagneur J,David L,Steinmetz LM

    更新日期:2006-08-01 00:00:00

  • Type II secretion: a protein secretion system for all seasons.

    abstract::In Gram-negative bacteria, type II secretion (T2S) is one of five protein secretion systems that permit the export of proteins from within the bacterial cell to the extracellular milieu and/or into target host cells. An analysis of numerous sequenced genomes now reveals that T2S genes are common, but by no means unive...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2005.09.005

    authors: Cianciotto NP

    更新日期:2005-12-01 00:00:00

  • Preparing the way: fungal motors in microtubule organization.

    abstract::Fungal growth, development and pathogenicity require hyphal tip growth, which is supported by polar exocytosis at the expanding growth region. It is assumed that molecular motors transport growth supplies along the fibrous elements of the cytoskeleton, such as microtubules, to the hyphal apex. Recent advances in live-...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2006.11.007

    authors: Steinberg G

    更新日期:2007-01-01 00:00:00

  • Demystifying Cell Cycle Arrest by HIV-1 Vif.

    abstract::Although APOBEC3 degradation is the canonical function of HIV-1 Vif, this viral protein also induces potent cell cycle arrest through a newly defined mechanism. Here, we review recent advances in this area and propose that the scope of this activity may go beyond subversion of the host cell cycle. ...

    journal_title:Trends in microbiology

    pub_type: 杂志文章

    doi:10.1016/j.tim.2021.01.001

    authors: Salamango DJ,Harris RS

    更新日期:2021-01-19 00:00:00

  • Sex-biased Immune Responses Following SARS-CoV-2 Infection.

    abstract::Males are disproportionately affected by severe disease and death from severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. In their recent article, Takahashi et al. found sex differences in immune responses to SARS-CoV-2 and the predictors of disease progression. These findings contribute to elucid...

    journal_title:Trends in microbiology

    pub_type: 评论,杂志文章

    doi:10.1016/j.tim.2020.10.002

    authors: Ursin RL,Shapiro JR,Klein SL

    更新日期:2020-12-01 00:00:00

  • How does Staphylococcus aureus escape the bloodstream?

    abstract::Staphylococcus aureus is a major cause of bacteraemia, which frequently leads to infective endocarditis, osteomyelitis, septic arthritis and metastatic abscess formation. The development of these secondary infections is due to bacterial dissemination from the blood into surrounding tissues and is associated with signi...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2010.12.005

    authors: Edwards AM,Massey RC

    更新日期:2011-04-01 00:00:00

  • Embracing Environmental Genomics and Machine Learning for Routine Biomonitoring.

    abstract::Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic ideal. Until now, environmental genomics was mainly used as a replacement of the burdensome morphological identification, to screen known morph...

    journal_title:Trends in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.tim.2018.10.012

    authors: Cordier T,Lanzén A,Apothéloz-Perret-Gentil L,Stoeck T,Pawlowski J

    更新日期:2019-05-01 00:00:00