How did life survive Earth's great oxygenation?

Abstract:

:Life on Earth originated and evolved in anoxic environments. Around 2.4 billion-years-ago, ancestors of Cyanobacteria invented oxygenic photosynthesis, producing substantial amounts of O2 as a byproduct of phototrophic water oxidation. The sudden appearance of O2 would have led to significant oxidative stress due to incompatibilities with core cellular biochemical processes. Here we examine this problem through the lens of Cyanobacteria-the first taxa to observe significant fluxes of intracellular dioxygen. These early oxygenic organisms likely adapted to the oxidative stress by co-opting preexisting systems (exaptation) with fortuitous antioxidant properties. Over time more advanced antioxidant systems evolved, allowing Cyanobacteria to adapt to an aerobic lifestyle and become the most important environmental engineers in Earth history.

journal_name

Curr Opin Chem Biol

authors

Fischer WW,Hemp J,Valentine JS

doi

10.1016/j.cbpa.2016.03.013

subject

Has Abstract

pub_date

2016-04-01 00:00:00

pages

166-78

eissn

1367-5931

issn

1879-0402

pii

S1367-5931(16)30020-5

journal_volume

31

pub_type

杂志文章,评审
  • Link of impaired metal ion homeostasis to mitochondrial dysfunction in neurons.

    abstract::Manganese, iron, copper, and zinc are observed to play essential roles in mitochondria. The overload and depletion of metal ions in mitochondria under pathological conditions, however, could disturb mitochondrial compartments and functions leading to cell death. In this review, we mainly summarize how impaired metal i...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.09.009

    authors: Nam E,Han J,Suh JM,Yi Y,Lim MH

    更新日期:2018-04-01 00:00:00

  • Encapsulins: microbial nanocompartments with applications in biomedicine, nanobiotechnology and materials science.

    abstract::Compartmentalization is one of the defining features of life. Cells use protein compartments to exert spatial control over their metabolism, store nutrients and create unique microenvironments needed for essential physiological processes. Encapsulins are a recently discovered class of protein nanocompartments found in...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2016.05.013

    authors: Giessen TW

    更新日期:2016-10-01 00:00:00

  • Peptide membranes in chemical evolution.

    abstract::Simple surfactants achieve remarkable long-range order in aqueous environments. This organizing potential is seen most dramatically in biological membranes where phospholipid assemblies both define cell boundaries and provide a ubiquitous structural scaffold for controlling cellular chemistry. Here we consider simple ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2009.09.027

    authors: Childers WS,Ni R,Mehta AK,Lynn DG

    更新日期:2009-12-01 00:00:00

  • Fresh insight to functioning of selected enzymes of the nitrogen cycle.

    abstract::The global nitrogen cycle is the process in which different forms of environmental N are interconverted by microorganisms either for assimilation into biomass or in respiratory energy-generating pathways. This short review highlights developments over the last 5 years in our understanding of functionality of nitrogena...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2016.02.009

    authors: Eady RR,Antonyuk SV,Hasnain SS

    更新日期:2016-04-01 00:00:00

  • Current progress in genetically encoded voltage indicators for neural activity recording.

    abstract::Genetically Encoded Voltage Indicators (GEVIs) are powerful tools used to investigate neural activity in the brain. The spatiotemporal resolution of GEVIs is on a subcellular and millisecond scale, and is superior to that of the functional magnetic resonance imaging (fMRI) and electroencephalogram (EEG). Further, whil...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2016.05.023

    authors: Inagaki S,Nagai T

    更新日期:2016-08-01 00:00:00

  • Activation of dihydrogen without transition metals.

    abstract::The metal-free hydrogenase from methanogenic archaea (Hmd) is a unique enzyme: it catalyzes the reaction of its substrate, methenyl-tetrahydromethanopterin, with molecular hydrogen without the aid of a transition metal. In other words, Hmd is currently the only example of a purely organic hydrogenation catalyst. Recen...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(00)00245-3

    authors: Berkessel A

    更新日期:2001-10-01 00:00:00

  • Genetic code expansion and bioorthogonal labelling enables cell specific proteomics in an animal.

    abstract::The site specific, co-translational introduction of unnatural amino acids into proteins produced in cells has been facilitated by the development of the pyrrolysyl-tRNA synthetase/tRNACUA pair. This pair can now be used to direct the site-specific incorporation of designer amino acids in E. coli, yeast, mammalian cell...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2014.07.001

    authors: Elliott TS,Bianco A,Chin JW

    更新日期:2014-08-01 00:00:00

  • Protein tyrosine phosphatases: mechanisms of catalysis and regulation.

    abstract::Recent structural information suggests that the HC(X)5R active-site motif defines three distinct evolutionary families of phosphatases that employ a common catalytic mechanism. In two instances, regulation of phosphatase activity employs autoinhibitory mechanisms involving either intermolecular or intramolecular inter...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80095-1

    authors: Denu JM,Dixon JE

    更新日期:1998-10-01 00:00:00

  • Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging.

    abstract::A long-standing goal of molecular imaging is to visualize cellular function within the context of living animals, necessitating the development of reporter genes compatible with deeply penetrant imaging modalities such as ultrasound and magnetic resonance imaging (MRI). Until recently, no reporter genes for ultrasound...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.02.011

    authors: Lu GJ,Farhadi A,Mukherjee A,Shapiro MG

    更新日期:2018-08-01 00:00:00

  • Applications of genetic algorithms in molecular diversity.

    abstract::The definition of molecular diversity and the development of measures for assessing the similarity or dissimilarity of molecules are central tasks for the design of novel biologically active compounds. Combinatorial chemistry allows the coupling of mathematical optimisation methods that do not require the a priori kno...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80013-6

    authors: Weber L

    更新日期:1998-06-01 00:00:00

  • Doing more than just the structure-structural genomics in kinase drug discovery.

    abstract::Structural genomics (SG) has significantly increased the number of novel protein structures of targets with medical relevance. In the protein kinase area, SG has contributed >50% of all novel kinases structures during the past three years and determined more than 30 novel catalytic domain structures. Many of the relea...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2008.01.042

    authors: Marsden BD,Knapp S

    更新日期:2008-02-01 00:00:00

  • Allosteric modulation of kinases and GPCRs: design principles and structural diversity.

    abstract::Allosteric binding sites, as opposed to traditional orthosteric binding sites, offer unparalleled opportunities for drug discovery by providing high levels of selectivity, mimicking physiological conditions, affording fewer side effects because of desensitization/downregulation, and engendering ligands with chemotypes...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2008.02.014

    authors: Lewis JA,Lebois EP,Lindsley CW

    更新日期:2008-06-01 00:00:00

  • The chemokine/chemokine-receptor family: potential and progress for therapeutic intervention.

    abstract::The chemokines are a large superfamily of chemotactic cytokines that are utilized to direct the trafficking and migration of leukocytes within the immune system. The chemokines mediate their activity through a large family of G-protein-coupled receptors, and thus are highly tractable as therapeutic targets. Exciting a...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(00)00113-7

    authors: Cascieri MA,Springer MS

    更新日期:2000-08-01 00:00:00

  • Asymmetric bioreduction of activated C=C bonds using enoate reductases from the old yellow enzyme family.

    abstract::The asymmetric bioreduction of alkenes bearing an electron-withdrawing group using flavin-dependent enzymes from the 'old yellow enzyme' family at the expense of NAD(P)H yields the corresponding non-racemic alkanes going in hand with the creation of up to two chiral carbon centres. To avoid external cofactor recycling...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2007.02.025

    authors: Stuermer R,Hauer B,Hall M,Faber K

    更新日期:2007-04-01 00:00:00

  • Enzyme catalysed tandem reactions.

    abstract::To transfer to the laboratory, the excellent efficiency shown by enzymes in Nature, biocatalysis, had to mimic several synthetic strategies used by the living organisms. Biosynthetic pathways are examples of tandem catalysis and may be assimilated in the biocatalysis field for the use of isolated multi-enzyme systems ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2013.02.015

    authors: Oroz-Guinea I,García-Junceda E

    更新日期:2013-04-01 00:00:00

  • Chemical approaches to transcriptional regulation.

    abstract::Given the correlation between many human diseases and mis-regulated transcription, there is a growing need for molecules that can inhibit or mimic key interactions between transcriptional activators and their binding partners. Because transcriptional activators typically participate in many different protein-protein b...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2005.08.012

    authors: Majmudar CY,Mapp AK

    更新日期:2005-10-01 00:00:00

  • Computational design strategies for combinatorial libraries.

    abstract::Medicinal chemistry principles are being increasingly applied to the design of smaller, high purity, information-rich libraries. Recent computational advances in statistical methodology, the design of libraries to reduce ADMET problems, targeting protein families and revisiting natural products as sources of inspirati...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(03)00057-7

    authors: Rose S,Stevens A

    更新日期:2003-06-01 00:00:00

  • Visualizing glycans on single cells and tissues-Visualizing glycans on single cells and tissues.

    abstract::Metabolic oligosaccharide engineering and chemoenzymatic glycan labeling have provided powerful tools to study glycans in living systems and tissue samples. In this review article, we summarize recent advances in this field with a focus on innovative approaches for glycan imaging. The presented applications demonstrat...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.04.018

    authors: Ovryn B,Li J,Hong S,Wu P

    更新日期:2017-08-01 00:00:00

  • Sense and sensitivity in bioprocessing-detecting cellular metabolites with biosensors.

    abstract::Biosensors use biological elements to detect or quantify an analyte of interest. In bioprocessing, biosensors are employed to monitor key metabolites. There are two main types: fully biological systems or biological recognition coupled with physical/chemical detection. New developments in chemical biosensors include m...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.05.014

    authors: Dekker L,Polizzi KM

    更新日期:2017-10-01 00:00:00

  • Deconvoluting the biology and druggability of protein lipidation using chemical proteomics.

    abstract::Lipids are indispensable cellular building blocks, and their post-translational attachment to proteins makes them important regulators of many biological processes. Dysfunction of protein lipidation is also implicated in many pathological states, yet its systematic analysis presents significant challenges. Thanks to i...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2020.10.002

    authors: Losada de la Lastra A,Hassan S,Tate EW

    更新日期:2020-11-19 00:00:00

  • Cross-linked enzyme crystals.

    abstract::The active site of cross-linked enzyme crystals can be further modified by chemical means, yielding a new type of chemically engineered enzyme. In the past year, the characteristics of cross-linked protein crystals as microporous materials have been studied and used as stationary phases in chromatographic separations....

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(99)80007-6

    authors: Häring D,Schreier P

    更新日期:1999-02-01 00:00:00

  • Mechanisms of drug/H+ antiport: complete cysteine-scanning mutagenesis and the protein engineering approach.

    abstract::The notorious difficulty of elucidating structures of membrane transporters by crystallography has long prevented our understanding of active transport mechanism coupled with ion/proton transport. The determination of the first crystal structure of the drug/H+ antiporter AcrB was a breakthrough for structure-based und...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2003.08.014

    authors: Tamura N,Konishi S,Yamaguchi A

    更新日期:2003-10-01 00:00:00

  • Quantitative chemical imaging with stimulated Raman scattering microscopy.

    abstract::Chemical imaging plays an increasingly important role in studying heterogeneous biological systems. It combines molecular spectroscopy with high-resolution spatial information to create quantitative images of molecular distributions. Here I summarize recent progress in technical developments and biological application...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.05.002

    authors: Fu D

    更新日期:2017-08-01 00:00:00

  • Glycomics meets genomics, epigenomics and other high throughput omics for system biology studies.

    abstract::Majority of eukaryotic proteins are glycosylated and their glycan moieties have numerous important structural, functional and regulatory roles. Because of structural complexity of glycans and technological limitations glycomics, and particularly glycoproteomics was not able to follow rapid progress in genomics and pro...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2012.12.007

    authors: Zoldoš V,Horvat T,Lauc G

    更新日期:2013-02-01 00:00:00

  • Approaches to the design of catalytic metallodrugs.

    abstract::Metal ions are known to act as catalytic centres in metallo-enzymes. On the other hand, low-molecular-weight metal complexes are widely used as catalysts in chemical systems. However, small catalysts do not have a large protein ligand to provide substrate selectivity and minimize catalyst poisoning. Despite the challe...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2015.01.024

    authors: Soldevila-Barreda JJ,Sadler PJ

    更新日期:2015-04-01 00:00:00

  • Systems modeling: a pathway to drug discovery.

    abstract::Systems modeling is emerging as a valuable tool in therapeutics. This is seen by the increasing use of clinically relevant computational models and a rise in systems biology companies working with the pharmaceutical industry. Systems models have helped understand the effects of pharmacological intervention at receptor...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2005.06.008

    authors: Rajasethupathy P,Vayttaden SJ,Bhalla US

    更新日期:2005-08-01 00:00:00

  • Parallel and combinatorial approaches for synthesis of ligands.

    abstract::Although new detection screening methods must still be developed, the actual main limitation in combinatorial chemistry seems to be the diversity of ligands that can be generated in terms of real structural and chemical diversity. Thus, there is a strong interest for the development of different strategies for the par...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2004.04.006

    authors: Lavastre O,Bonnette F,Gallard L

    更新日期:2004-06-01 00:00:00

  • Enzyme catalysed deracemisation and dynamic kinetic resolution reactions.

    abstract::New catalysts and reaction conditions have been developed for the dynamic kinetic resolution or deracemisation of racemic mixtures of chiral compounds. Specific functional groups that lend themselves particularly well to this approach include chiral secondary alcohols, alpha-amino acids, amines and carboxylic acids. A...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2004.02.001

    authors: Turner NJ

    更新日期:2004-04-01 00:00:00

  • Acylating drugs: redesigning natural covalent inhibitors.

    abstract::Structural modification of naturally occurring beta-lactams and beta-lactones is a highly effective strategy for generating drugs for treating bacterial infections, cancer, obesity, and hyperlipidemia. These drugs acylate catalytic amino acids (serine, threonine, or cysteine) in enzyme targets such as penicillin-bindi...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2010.03.035

    authors: Kluge AF,Petter RC

    更新日期:2010-06-01 00:00:00

  • Phosphorescence bioimaging using cyclometalated Ir(III) complexes.

    abstract::Recent advances in the development of the phosphorescent Ir(III) complexes have made it possible to implement the phosphorescence modality in bioimaging applications. A variety of phosphorescent Ir(III) complexes have been synthesized and assessed in the context of in vitro and in vivo imaging, especially in subcellul...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2013.05.023

    authors: You Y

    更新日期:2013-08-01 00:00:00