Fresh insight to functioning of selected enzymes of the nitrogen cycle.

Abstract:

:The global nitrogen cycle is the process in which different forms of environmental N are interconverted by microorganisms either for assimilation into biomass or in respiratory energy-generating pathways. This short review highlights developments over the last 5 years in our understanding of functionality of nitrogenase, Cu-nitrite reductase, NO reductase and N2O reductase, complex metalloenzymes that catalyze electron/proton-coupled substrate reduction reactions.

journal_name

Curr Opin Chem Biol

authors

Eady RR,Antonyuk SV,Hasnain SS

doi

10.1016/j.cbpa.2016.02.009

subject

Has Abstract

pub_date

2016-04-01 00:00:00

pages

103-12

eissn

1367-5931

issn

1879-0402

pii

S1367-5931(16)30008-4

journal_volume

31

pub_type

杂志文章,评审
  • Traceless and multifunctional linkers for the generation of small molecules on solid supports.

    abstract::Numerous developments in useful linkers are closely related with the advances in solid-phase organic synthesis. These linkers allow facile attachment functionalization and release molecules of interest. Designing a new anchoring group can be essential for synthesis success, especially for small molecules on solid supp...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2004.04.004

    authors: Gil C,Bräse S

    更新日期:2004-06-01 00:00:00

  • Context and complexity: the next big thing in synthetic glycobiology.

    abstract::Complex glycans participate in many essential life processes. Studies of glycan-mediated biological events have traditionally employed structurally defined fragments of the more elaborate natural molecules. However, it is now clear that this approach may sometimes be insufficient and this realization has prompted a de...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2013.10.009

    authors: Lowary TL

    更新日期:2013-12-01 00:00:00

  • Vanadium haloperoxidases.

    abstract::The nature of the oxidized halogen intermediate in vanadium bromoperoxidase has recently been shown to depend on the nature of the organic substrate. For example, in the presence of indoles, vanadium bromoperoxidase does not release a freely diffusible oxidized halogen intermediate (such as HOBr+/-BR2+/-Br3-). Regiose...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(98)80070-7

    authors: Butler A

    更新日期:1998-04-01 00:00:00

  • Cross-linked enzyme crystals.

    abstract::The active site of cross-linked enzyme crystals can be further modified by chemical means, yielding a new type of chemically engineered enzyme. In the past year, the characteristics of cross-linked protein crystals as microporous materials have been studied and used as stationary phases in chromatographic separations....

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(99)80007-6

    authors: Häring D,Schreier P

    更新日期:1999-02-01 00:00:00

  • Structure-directed combinatorial library design.

    abstract::In recent years pharmaceutical companies have utilized structure-based drug design and combinatorial library design techniques to speed up their drug discovery efforts. Both approaches are routinely used in the lead discovery and lead optimization stages of the drug discovery process. Fragment-based drug design, a new...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2008.02.007

    authors: Zhou JZ

    更新日期:2008-06-01 00:00:00

  • Combinatorial synthetic design.

    abstract::The range and diversity of solid-phase synthetic methodology continues to develop very rapidly, allowing the generation of previously inaccessible compound libraries. The design of such libraries requires consideration of linkage strategies, newly developed solid-phase reactions and emerging solution-phase processes. ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/S1367-5931(99)80046-5

    authors: Oliver SF,Abell C

    更新日期:1999-06-01 00:00:00

  • Vitamin B12 in the spotlight again.

    abstract::The ability of cobalamin to coordinate different upper axial ligands gives rise to a diversity of reactivity. Traditionally, adenosylcobalamin is associated with radical-based rearrangements, and methylcobalamin with methyl cation transfers. Recently, however, a new role for adenosylcobalamin has been discovered as a ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.01.013

    authors: Bridwell-Rabb J,Drennan CL

    更新日期:2017-04-01 00:00:00

  • Recent progress in synthetic and biological studies of GPI anchors and GPI-anchored proteins.

    abstract::Covalent attachment of glycosylphosphatidylinositols (GPIs) to the protein C-terminus is one of the most common posttranslational modifications in eukaryotic cells. In addition to anchoring surface proteins to the cell membrane, GPIs also have many other important biological functions, determined by their unique struc...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2013.09.016

    authors: Yu S,Guo Z,Johnson C,Gu G,Wu Q

    更新日期:2013-12-01 00:00:00

  • Peptide mediated formation of noble metal nanoparticles-controlling size and spatial arrangement.

    abstract::Over the past two decades, peptides have expanded the toolbox of additives for the preparation of noble metal nanoparticles. Their functional and structural modularity and accompanying molecular recognition and self-assembly properties offer unique opportunities for the controlled formation of NPs. Within this review,...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.09.005

    authors: Corra S,Shoshan MS,Wennemers H

    更新日期:2017-10-01 00:00:00

  • Insights into the physiology of ammonia-oxidizing microorganisms.

    abstract::Nitrification is the aerobic process of the nitrogen cycle that converts ammonia to nitrate and is facilitated by ammonia-oxidizing and nitrite-oxidizing microorganisms. Ammonia-oxidizers are unique chemolithotrophs that evolved specialized networks of electron carriers to generate proton motive force using ammonia as...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.09.003

    authors: Stein LY

    更新日期:2019-04-01 00:00:00

  • The discovery of catalytically active peptides through combinatorial chemistry.

    abstract::In recent years, ogliopeptides have enjoyed ever increasing interest in two areas: first, approaches to biomimetic enzyme-like activity; and second, as metal-free catalysts for enantioselective transformations of synthetic interest. The discovery and optimization of peptides for these purposes has often used the metho...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(03)00065-6

    authors: Berkessel A

    更新日期:2003-06-01 00:00:00

  • Light-activated proteins.

    abstract::A wide assortment of caged compounds, which are species whose biological activity can be unleashed with light, have been synthesized and used to investigate a variety of biological phenomena. In contrast, the construction of caged proteins and their application to biological systems has lagged far behind. Recent advan...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(99)80015-5

    authors: Curley K,Lawrence DS

    更新日期:1999-02-01 00:00:00

  • The computational prediction of toxicity.

    abstract::Recent developments in the prediction of toxicity from chemical structure have been reviewed. Attention has been drawn to some of the problems that can be encountered in the area of predictive toxicology, including the need for a multi-disciplinary approach and the need to address mechanisms of action. Progress has be...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(00)00218-0

    authors: Barratt MD,Rodford RA

    更新日期:2001-08-01 00:00:00

  • The phosphoproteomics data explosion.

    abstract::There are likely more than 500000 potential phosphorylation sites in a cellular proteome. This dynamic phosphorylation is under tight control of a variety of kinases and phosphatases. In recent years significant progress has been made in the large-scale analysis of these in vitro and in vivo protein phosphorylation ev...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2009.06.022

    authors: Lemeer S,Heck AJ

    更新日期:2009-10-01 00:00:00

  • New thrombin inhibitors in cardiovascular disease.

    abstract::Thrombin is a multifunctional serine protease that plays a primary role in the pathogenic pathway of thrombosis as a consequence of its actions on the two principal components of blood clots, fibrin and activated platelets. Deficiencies in available therapies, heparin and coumadin, have recently led to an intense effo...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(97)80016-6

    authors: Ripka WC

    更新日期:1997-08-01 00:00:00

  • Optimizing non-natural protein function with directed evolution.

    abstract::Developing technologies such as unnatural amino acid mutagenesis, non-natural cofactor engineering, and computational design are generating proteins with novel functions; these proteins, however, often do not reach performance targets and would benefit from further optimization. Evolutionary methods can complement the...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2010.11.020

    authors: Brustad EM,Arnold FH

    更新日期:2011-04-01 00:00:00

  • Mechanistic advances in plant natural product enzymes.

    abstract::The biosynthetic pathways of plant natural products offer an abundance of knowledge to scientists in many fields. Synthetic chemists can be inspired by the synthetic strategies that nature uses to construct these compounds. Chemical and biological engineers are working to reprogram these biosynthetic pathways to more ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2009.06.019

    authors: Usera AR,O'Connor SE

    更新日期:2009-10-01 00:00:00

  • Peroxynitrite: reactive, invasive and enigmatic.

    abstract::The reactive oxygen and nitrogen species superoxide ion, nitric oxide, nitrogen dioxide and peroxynitrite ion all react with biological target molecules. Some of these interactions are carefully orchestrated segments of signal transduction cascades or part of the armamentarium of the immune system, others are patholog...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/S1367-5931(99)80036-2

    authors: Groves JT

    更新日期:1999-04-01 00:00:00

  • Chemical space navigation in lead discovery.

    abstract::The number of new chemical entities has remained rather constant (averaging 37 per year) in the past decade, despite the multiple-fold increase in the number of compounds that are being made and tested. Chemical space requires novel methods that can handle the increasing number of potentially accessible molecules. Nei...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(02)00329-0

    authors: Oprea TI

    更新日期:2002-06-01 00:00:00

  • Quantitative chemical imaging with stimulated Raman scattering microscopy.

    abstract::Chemical imaging plays an increasingly important role in studying heterogeneous biological systems. It combines molecular spectroscopy with high-resolution spatial information to create quantitative images of molecular distributions. Here I summarize recent progress in technical developments and biological application...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.05.002

    authors: Fu D

    更新日期:2017-08-01 00:00:00

  • Advances in synthesis of biotin and assembly of lipoic acid.

    abstract::Although biotin and lipoic acid are two universally conserved cofactors essential for intermediary metabolism, their synthetic pathways have become known only in recent years. Both pathways have unusual features. Biotin synthesis in Escherichia coli requires a methylation that is later removed whereas lipoic acid is a...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.08.004

    authors: Cronan JE

    更新日期:2018-12-01 00:00:00

  • Zinc sensing for cellular application.

    abstract::Numerous tools for Zn2+ sensing in living cells have become available in the past three years. Among them, fluorescence imaging using fluorescent sensor molecules has been the most popular approach. Some of these sensor molecules can be used to visualize Zn2+ in living cells. Some of the biological functions of Zn2+ h...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2004.02.007

    authors: Kikuchi K,Komatsu K,Nagano T

    更新日期:2004-04-01 00:00:00

  • Maturation of nitrogenase cofactor-the role of a class E radical SAM methyltransferase NifB.

    abstract::Nitrogenase catalyzes the important reactions of N2-reduction, CO-reduction and CO2-reduction at its active cofactor site. Designated the M-cluster, this complex metallocofactor is assembled through the generation of a characteristic 8Fe-core before the insertion of Mo and homocitrate that completes the stoichiometry ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2016.02.016

    authors: Hu Y,Ribbe MW

    更新日期:2016-04-01 00:00:00

  • Avian influenza virus, a very sticky situation.

    abstract::The appearance of the highly pathogenic avian influenza virus H5N1 highlighted the potential impact of influenza virus on humanity. The emergence of this high profile virus stimulated much research towards a better understanding of the key determinants for successful human-to-human transmission and as such has provide...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2008.01.036

    authors: von Itzstein M

    更新日期:2008-02-01 00:00:00

  • Lessons from the rifamycin biosynthetic gene cluster.

    abstract::There is currently intense interest in unravelling the modus operandi of type I modular polyketide synthases in order to lay the ground work for their use in the combinatorial biosynthesis of new bioactive molecules. Much of our knowledge is derived from studies on 6-deoxyerythronolide B (DEBS), the enzyme assembling ...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/s1367-5931(99)00014-9

    authors: Floss HG,Yu TW

    更新日期:1999-10-01 00:00:00

  • Stimulus responsive elastin biopolymers: Applications in medicine and biotechnology.

    abstract::Elastin-like polypeptides (ELPs) are artificial polypeptides, derived from Val-Pro-Gly-Xaa-Gly (VPGXG) pentapeptide repeats found in human tropoelastin, that reversibly coacervate above a critical temperature. Genetically encodable ELPs are monodisperse, stimuli responsive, and biocompatible, properties that make them...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2006.10.010

    authors: Chilkoti A,Christensen T,MacKay JA

    更新日期:2006-12-01 00:00:00

  • Detection and identification of protein citrullination in complex biological systems.

    abstract::Protein citrullination is a post-translational modification of arginine that is catalyzed by the Protein Arginine Deiminase (PAD) family of enzymes. Aberrantly increased citrullination is associated with a host of inflammatory diseases and cancer and PAD inhibitors have shown remarkable efficacy in a range of diseases...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2015.10.014

    authors: Clancy KW,Weerapana E,Thompson PR

    更新日期:2016-02-01 00:00:00

  • A new era for electron bifurcation.

    abstract::Electron bifurcation, or the coupling of exergonic and endergonic oxidation-reduction reactions, was discovered by Peter Mitchell and provides an elegant mechanism to rationalize and understand the logic that underpins the Q cycle of the respiratory chain. Thought to be a unique reaction of respiratory complex III for...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2018.07.026

    authors: Peters JW,Beratan DN,Bothner B,Dyer RB,Harwood CS,Heiden ZM,Hille R,Jones AK,King PW,Lu Y,Lubner CE,Minteer SD,Mulder DW,Raugei S,Schut GJ,Seefeldt LC,Tokmina-Lukaszewska M,Zadvornyy OA,Zhang P,Adams MW

    更新日期:2018-12-01 00:00:00

  • Visualizing glycans on single cells and tissues-Visualizing glycans on single cells and tissues.

    abstract::Metabolic oligosaccharide engineering and chemoenzymatic glycan labeling have provided powerful tools to study glycans in living systems and tissue samples. In this review article, we summarize recent advances in this field with a focus on innovative approaches for glycan imaging. The presented applications demonstrat...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2017.04.018

    authors: Ovryn B,Li J,Hong S,Wu P

    更新日期:2017-08-01 00:00:00

  • Nucleotide analogues to investigate RNA structure and function.

    abstract::RNA plays an essential cellular role in nearly every aspect of the transmission and expression of genetic information, including regulatory roles that have significance for cellular development. Access to RNA bearing synthetic modifications has allowed biological chemists to probe deep into the inner workings of cellu...

    journal_title:Current opinion in chemical biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.cbpa.2005.10.009

    authors: Das SR,Fong R,Piccirilli JA

    更新日期:2005-12-01 00:00:00