Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability.

Abstract:

:In human cancers, oncogenic mutations commonly occur in the RAS genes KRAS, NRAS, or HRAS, but there are no clinical RAS inhibitors. Mutations are more prevalent in KRAS, possibly suggesting a unique oncogenic activity mediated by KRAS-specific interaction partners, which might be targeted. Here, we determine the specific protein interactomes of each RAS isoform by BirA proximity-dependent biotin identification. The combined interactomes are screened by CRISPR-Cas9 loss-of-function assays for proteins required for oncogenic KRAS-dependent, NRAS-dependent, or HRAS-dependent proliferation and censored for druggable proteins. Using this strategy, we identify phosphatidylinositol phosphate kinase PIP5K1A as a KRAS-specific interactor and show that PIP5K1A binds to a unique region in KRAS. Furthermore, PIP5K1A depletion specifically reduces oncogenic KRAS signaling and proliferation, and sensitizes pancreatic cancer cell lines to a MAPK inhibitor. These results suggest PIP5K1A as a potential target in KRAS signaling for the treatment of KRAS-mutant cancers.

journal_name

Nat Commun

journal_title

Nature communications

authors

Adhikari H,Counter CM

doi

10.1038/s41467-018-05692-6

subject

Has Abstract

pub_date

2018-09-07 00:00:00

pages

3646

issue

1

issn

2041-1723

pii

10.1038/s41467-018-05692-6

journal_volume

9

pub_type

杂志文章
  • Seed-induced acceleration of amyloid-β mediated neurotoxicity in vivo.

    abstract::Seeded propagation of amyloid-beta (Aβ) pathology is suggested to contribute to the progression of Alzheimer's disease. Local overproduction of aggregation-prone Aβ variants could explain the focal initiation of a seeding cascade that subsequently triggers widespread pathology. Several animal models support this seedi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00579-4

    authors: Sowade RF,Jahn TR

    更新日期:2017-09-11 00:00:00

  • Pooled CRISPR interference screening enables genome-scale functional genomics study in bacteria with superior performance.

    abstract::To fully exploit the microbial genome resources, a high-throughput experimental platform is needed to associate genes with phenotypes at the genome level. We present here a novel method that enables investigation of the cellular consequences of repressing individual transcripts based on the CRISPR interference (CRISPR...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04899-x

    authors: Wang T,Guan C,Guo J,Liu B,Wu Y,Xie Z,Zhang C,Xing XH

    更新日期:2018-06-26 00:00:00

  • Time-invariant working memory representations in the presence of code-morphing in the lateral prefrontal cortex.

    abstract::Maintenance of working memory is thought to involve the activity of prefrontal neuronal populations with strong recurrent connections. However, it was recently shown that distractors evoke a morphing of the prefrontal population code, even when memories are maintained throughout the delay. How can a morphing code main...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12841-y

    authors: Parthasarathy A,Tang C,Herikstad R,Cheong LF,Yen SC,Libedinsky C

    更新日期:2019-11-01 00:00:00

  • Whole blood stabilization for the microfluidic isolation and molecular characterization of circulating tumor cells.

    abstract::Precise rare-cell technologies require the blood to be processed immediately or be stabilized with fixatives. Such restrictions limit the translation of circulating tumor cell (CTC)-based liquid biopsy assays that provide accurate molecular data in guiding clinical decisions. Here we describe a method to preserve whol...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01705-y

    authors: Wong KHK,Tessier SN,Miyamoto DT,Miller KL,Bookstaver LD,Carey TR,Stannard CJ,Thapar V,Tai EC,Vo KD,Emmons ES,Pleskow HM,Sandlin RD,Sequist LV,Ting DT,Haber DA,Maheswaran S,Stott SL,Toner M

    更新日期:2017-11-23 00:00:00

  • Microtubule acetylation amplifies p38 kinase signalling and anti-inflammatory IL-10 production.

    abstract::Reversible acetylation of α-tubulin is an evolutionarily conserved modification in microtubule networks. Despite its prevalence, the physiological function and regulation of microtubule acetylation remain poorly understood. Here we report that macrophages challenged by bacterial lipopolysaccharides (LPS) undergo exten...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4479

    authors: Wang B,Rao YH,Inoue M,Hao R,Lai CH,Chen D,McDonald SL,Choi MC,Wang Q,Shinohara ML,Yao TP

    更新日期:2014-03-17 00:00:00

  • The F-box protein FKF1 inhibits dimerization of COP1 in the control of photoperiodic flowering.

    abstract::In Arabidopsis thaliana, CONSTANS (CO) plays an essential role in the regulation of photoperiodic flowering under long-day conditions. CO protein is stable only in the afternoon of long days, when it induces the expression of FLOWERING LOCUS T (FT), which promotes flowering. The blue-light photoreceptor FLAVIN-BINDING...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02476-2

    authors: Lee BD,Kim MR,Kang MY,Cha JY,Han SH,Nawkar GM,Sakuraba Y,Lee SY,Imaizumi T,McClung CR,Kim WY,Paek NC

    更新日期:2017-12-22 00:00:00

  • A new hypothesis for the origin of Amazonian Dark Earths.

    abstract::Amazonian Dark Earths (ADEs) are unusually fertile soils characterised by elevated concentrations of microscopic charcoal particles, which confer their distinctive colouration. Frequent occurrences of pre-Columbian artefacts at ADE sites led to their ubiquitous classification as Anthrosols (soils of anthropic origin)....

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20184-2

    authors: Silva LCR,Corrêa RS,Wright JL,Bomfim B,Hendricks L,Gavin DG,Muniz AW,Martins GC,Motta ACV,Barbosa JZ,Melo VF,Young SD,Broadley MR,Santos RV

    更新日期:2021-01-04 00:00:00

  • Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate:phosphate antiporter.

    abstract::Membrane transporters actively translocate their substrate by undergoing large-scale structural transitions between inward- (IF) and outward-facing (OF) states ('alternating-access' mechanism). Despite extensive structural studies, atomic-level mechanistic details of such structural transitions, and as importantly, th...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9393

    authors: Moradi M,Enkavi G,Tajkhorshid E

    更新日期:2015-09-29 00:00:00

  • Strong selection during the last millennium for African ancestry in the admixed population of Madagascar.

    abstract::While admixed populations offer a unique opportunity to detect selection, the admixture in most of the studied populations occurred too recently to produce conclusive signals. By contrast, Malagasy populations originate from admixture between Asian and African populations that occurred ~27 generations ago, providing p...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03342-5

    authors: Pierron D,Heiske M,Razafindrazaka H,Pereda-Loth V,Sanchez J,Alva O,Arachiche A,Boland A,Olaso R,Deleuze JF,Ricaut FX,Rakotoarisoa JA,Radimilahy C,Stoneking M,Letellier T

    更新日期:2018-03-02 00:00:00

  • Late Na(+) current and protracted electrical recovery are critical determinants of the aging myopathy.

    abstract::The aging myopathy manifests itself with diastolic dysfunction and preserved ejection fraction. We raised the possibility that, in a mouse model of physiological aging, defects in electromechanical properties of cardiomyocytes are important determinants of the diastolic characteristics of the myocardium, independently...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9803

    authors: Signore S,Sorrentino A,Borghetti G,Cannata A,Meo M,Zhou Y,Kannappan R,Pasqualini F,O'Malley H,Sundman M,Tsigkas N,Zhang E,Arranto C,Mangiaracina C,Isobe K,Sena BF,Kim J,Goichberg P,Nahrendorf M,Isom LL,Leri A,An

    更新日期:2015-11-06 00:00:00

  • Kinetic gating mechanism of DNA damage recognition by Rad4/XPC.

    abstract::The xeroderma pigmentosum C (XPC) complex initiates nucleotide excision repair by recognizing DNA lesions before recruiting downstream factors. How XPC detects structurally diverse lesions embedded within normal DNA is unknown. Here we present a crystal structure that captures the yeast XPC orthologue (Rad4) on a sing...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6849

    authors: Chen X,Velmurugu Y,Zheng G,Park B,Shim Y,Kim Y,Liu L,Van Houten B,He C,Ansari A,Min JH

    更新日期:2015-01-06 00:00:00

  • Brain-to-cervical lymph node signaling after stroke.

    abstract::After stroke, peripheral immune cells are activated and these systemic responses may amplify brain damage, but how the injured brain sends out signals to trigger systemic inflammation remains unclear. Here we show that a brain-to-cervical lymph node (CLN) pathway is involved. In rats subjected to focal cerebral ischem...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13324-w

    authors: Esposito E,Ahn BJ,Shi J,Nakamura Y,Park JH,Mandeville ET,Yu Z,Chan SJ,Desai R,Hayakawa A,Ji X,Lo EH,Hayakawa K

    更新日期:2019-11-22 00:00:00

  • Stereoselective synthesis of medium lactams enabled by metal-free hydroalkoxylation/stereospecific [1,3]-rearrangement.

    abstract::Rearrangement reactions have attracted considerable interest over the past decades due to their high bond-forming efficiency and atom economy in the construction of complex organic architectures. In contrast to the well-established [3,3]-rearrangement, [1,3] O-to-C rearrangement has been far less vigorously investigat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11245-2

    authors: Zhou B,Zhang YQ,Zhang K,Yang MY,Chen YB,Li Y,Peng Q,Zhu SF,Zhou QL,Ye LW

    更新日期:2019-07-19 00:00:00

  • High-field plasma acceleration in a high-ionization-potential gas.

    abstract::Plasma accelerators driven by particle beams are a very promising future accelerator technology as they can sustain high accelerating fields over long distances with high energy efficiency. They rely on the excitation of a plasma wave in the wake of a drive beam. To generate the plasma, a neutral gas can be field-ioni...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11898

    authors: Corde S,Adli E,Allen JM,An W,Clarke CI,Clausse B,Clayton CE,Delahaye JP,Frederico J,Gessner S,Green SZ,Hogan MJ,Joshi C,Litos M,Lu W,Marsh KA,Mori WB,Vafaei-Najafabadi N,Walz D,Yakimenko V

    更新日期:2016-06-17 00:00:00

  • Using somatic variant richness to mine signals from rare variants in the cancer genome.

    abstract::To date, the vast preponderance of somatic variants observed in the cancer genome have been rare variants, and it is common in practice to encounter in a new tumor variants that have not been observed previously. Here we focus on probability estimation for encountering such hitherto unseen variants. We draw upon stati...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13402-z

    authors: Chakraborty S,Arora A,Begg CB,Shen R

    更新日期:2019-12-03 00:00:00

  • High photoresponsivity in an all-graphene p-n vertical junction photodetector.

    abstract::Intensive studies have recently been performed on graphene-based photodetectors, but most of them are based on field effect transistor structures containing mechanically exfoliated graphene, not suitable for practical large-scale device applications. Here we report high-efficient photodetector behaviours of chemical v...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4249

    authors: Kim CO,Kim S,Shin DH,Kang SS,Kim JM,Jang CW,Joo SS,Lee JS,Kim JH,Choi SH,Hwang E

    更新日期:2014-01-01 00:00:00

  • Size and surface charge characterization of nanoparticles with a salt gradient.

    abstract::Exosomes are nanometer-sized lipid vesicles present in liquid biopsies and used as biomarkers for several diseases including cancer, Alzheimer's, and central nervous system diseases. Purification and subsequent size and surface characterization are essential to exosome-based diagnostics. Sample purification is, howeve...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15889-3

    authors: Rasmussen MK,Pedersen JN,Marie R

    更新日期:2020-05-11 00:00:00

  • Operando and three-dimensional visualization of anion depletion and lithium growth by stimulated Raman scattering microscopy.

    abstract::Visualization of ion transport in electrolytes provides fundamental understandings of electrolyte dynamics and electrolyte-electrode interactions. However, this is challenging because existing techniques are hard to capture low ionic concentrations and fast electrolyte dynamics. Here we show that stimulated Raman scat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05289-z

    authors: Cheng Q,Wei L,Liu Z,Ni N,Sang Z,Zhu B,Xu W,Chen M,Miao Y,Chen LQ,Min W,Yang Y

    更新日期:2018-07-30 00:00:00

  • Slab morphology and deformation beneath Izu-Bonin.

    abstract::Seismic tomography provides unique constraints on the morphology, the deformation, and (indirectly) the rheology of subducting slabs. We use teleseismic double-difference P-wave tomography to image with unprecedented clarity the structural complexity of the Izu-Bonin slab. We resolve a tear in the slab in the mantle t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09279-7

    authors: Zhang H,Wang F,Myhill R,Guo H

    更新日期:2019-03-21 00:00:00

  • Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity.

    abstract::Although B cell response is frequently found in cancer, there is little evidence that it alters tumor development or progression. The process through which tumor-associated antigens trigger humoral response is not well delineated. We investigate the repertoire of antigens associated with humoral immune response in pan...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08109-6

    authors: Capello M,Vykoukal JV,Katayama H,Bantis LE,Wang H,Kundnani DL,Aguilar-Bonavides C,Aguilar M,Tripathi SC,Dhillon DS,Momin AA,Peters H,Katz MH,Alvarez H,Bernard V,Ferri-Borgogno S,Brand R,Adler DG,Firpo MA,Mulvihill S

    更新日期:2019-01-16 00:00:00

  • Dissecting the circuit for blindsight to reveal the critical role of pulvinar and superior colliculus.

    abstract::In patients with damage to the primary visual cortex (V1), residual vision can guide goal-directed movements to targets in the blind field without awareness. This phenomenon has been termed blindsight, and its neural mechanisms are controversial. There should be visual pathways to the higher visual cortices bypassing ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08058-0

    authors: Kinoshita M,Kato R,Isa K,Kobayashi K,Kobayashi K,Onoe H,Isa T

    更新日期:2019-01-11 00:00:00

  • Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-019-13096-3

    authors: Saremi NF,Supple MA,Byrne A,Cahill JA,Coutinho LL,Dalén L,Figueiró HV,Johnson WE,Milne HJ,O'Brien SJ,O'Connell B,Onorato DP,Riley SPD,Sikich JA,Stahler DR,Villela PMS,Vollmers C,Wayne RK,Eizirik E,Corbett-Detig RB,

    更新日期:2019-11-21 00:00:00

  • Engineering modular intracellular protein sensor-actuator devices.

    abstract::Understanding and reshaping cellular behaviors with synthetic gene networks requires the ability to sense and respond to changes in the intracellular environment. Intracellular proteins are involved in almost all cellular processes, and thus can provide important information about changes in cellular conditions such a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03984-5

    authors: Siciliano V,DiAndreth B,Monel B,Beal J,Huh J,Clayton KL,Wroblewska L,McKeon A,Walker BD,Weiss R

    更新日期:2018-05-14 00:00:00

  • Field theory for recurrent mobility.

    abstract::Understanding human mobility is crucial for applications such as forecasting epidemic spreading, planning transport infrastructure and urbanism in general. While, traditionally, mobility information has been collected via surveys, the pervasive adoption of mobile technologies has brought a wealth of (real time) data. ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11841-2

    authors: Mazzoli M,Molas A,Bassolas A,Lenormand M,Colet P,Ramasco JJ

    更新日期:2019-08-29 00:00:00

  • Frustration-driven C 4 symmetric order in a naturally-heterostructured superconductor Sr2VO3FeAs.

    abstract::A subtle balance between competing interactions in iron-based superconductors (FeSCs) can be tipped by additional interfacial interactions in a heterostructure, often inducing exotic phases with unprecedented properties. Particularly when the proximity-coupled layer is magnetically active, rich phase diagrams are expe...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02327-0

    authors: Ok JM,Baek SH,Hoch C,Kremer RK,Park SY,Ji S,Büchner B,Park JH,Hyun SI,Shim JH,Bang Y,Moon EG,Mazin II,Kim JS

    更新日期:2017-12-18 00:00:00

  • Identification of the PGRMC1 protein complex as the putative sigma-2 receptor binding site.

    abstract::The sigma-2 receptor, whose gene remains to be cloned, has been validated as a biomarker for tumour cell proliferation. Here we report the use of a novel photoaffinity probe, WC-21, to identify the sigma-2 receptor-binding site. WC-21, a sigma-2 ligand containing both a photoactive azide moiety and a fluorescein isoth...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1386

    authors: Xu J,Zeng C,Chu W,Pan F,Rothfuss JM,Zhang F,Tu Z,Zhou D,Zeng D,Vangveravong S,Johnston F,Spitzer D,Chang KC,Hotchkiss RS,Hawkins WG,Wheeler KT,Mach RH

    更新日期:2011-07-05 00:00:00

  • Nonequilibrium self-assembly dynamics of icosahedral viral capsids packaging genome or polyelectrolyte.

    abstract::The survival of viruses partly relies on their ability to self-assemble inside host cells. Although coarse-grained simulations have identified different pathways leading to assembled virions from their components, experimental evidence is severely lacking. Here, we use time-resolved small-angle X-ray scattering to unc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05426-8

    authors: Chevreuil M,Law-Hine D,Chen J,Bressanelli S,Combet S,Constantin D,Degrouard J,Möller J,Zeghal M,Tresset G

    更新日期:2018-08-06 00:00:00

  • X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals.

    abstract::Biomolecular X-ray structures typically provide a static, time- and ensemble-averaged view of molecular ensembles in crystals. In the absence of rigid-body motions and lattice defects, B-factors are thought to accurately reflect the structural heterogeneity of such ensembles. In order to study the effects of averaging...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4220

    authors: Kuzmanic A,Pannu NS,Zagrovic B

    更新日期:2014-01-01 00:00:00

  • Ecological niche modelling does not support climatically-driven dinosaur diversity decline before the Cretaceous/Paleogene mass extinction.

    abstract::In the lead-up to the Cretaceous/Paleogene mass extinction, dinosaur diversity is argued to have been either in long-term decline, or thriving until their sudden demise. The latest Cretaceous (Campanian-Maastrichtian [83-66 Ma]) of North America provides the best record to address this debate, but even here diversity ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08997-2

    authors: Chiarenza AA,Mannion PD,Lunt DJ,Farnsworth A,Jones LA,Kelland SJ,Allison PA

    更新日期:2019-03-06 00:00:00

  • Weakening of the stratospheric polar vortex by Arctic sea-ice loss.

    abstract::Successive cold winters of severely low temperatures in recent years have had critical social and economic impacts on the mid-latitude continents in the Northern Hemisphere. Although these cold winters are thought to be partly driven by dramatic losses of Arctic sea-ice, the mechanism that links sea-ice loss to cold w...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5646

    authors: Kim BM,Son SW,Min SK,Jeong JH,Kim SJ,Zhang X,Shim T,Yoon JH

    更新日期:2014-09-02 00:00:00