Mouse genomic variation and its effect on phenotypes and gene regulation.

Abstract:

:We report genome sequences of 17 inbred strains of laboratory mice and identify almost ten times more variants than previously known. We use these genomes to explore the phylogenetic history of the laboratory mouse and to examine the functional consequences of allele-specific variation on transcript abundance, revealing that at least 12% of transcripts show a significant tissue-specific expression bias. By identifying candidate functional variants at 718 quantitative trait loci we show that the molecular nature of functional variants and their position relative to genes vary according to the effect size of the locus. These sequences provide a starting point for a new era in the functional analysis of a key model organism.

journal_name

Nature

journal_title

Nature

authors

Keane TM,Goodstadt L,Danecek P,White MA,Wong K,Yalcin B,Heger A,Agam A,Slater G,Goodson M,Furlotte NA,Eskin E,Nellåker C,Whitley H,Cleak J,Janowitz D,Hernandez-Pliego P,Edwards A,Belgard TG,Oliver PL,McIntyre RE,

doi

10.1038/nature10413

subject

Has Abstract

pub_date

2011-09-14 00:00:00

pages

289-94

issue

7364

eissn

0028-0836

issn

1476-4687

pii

nature10413

journal_volume

477

pub_type

杂志文章

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