Predicting sigma28 promoters in eleven Shewanella genomes.

Abstract:

:An iterative position-specific score matrix (PSSM)-based approach was used to predict sigma(28) promoters in 11 Shewanella genomes. The Shewanella Correlation Browser was used to distinguish true-positive predictions from false-positive predictions in Shewanella oneidensis MR-1 by generating a sigma(28)-regulated transcriptional network from transcriptional profiling data. This dual-pronged approach identified several genes that have sigma(28) promoters and that may be involved with motility or chemotaxis in Shewanella.

journal_name

FEMS Microbiol Lett

authors

Song W,Juhn FS,Naiman DQ,Konstantinidis KT,Gardner TS,Ward MJ

doi

10.1111/j.1574-6968.2008.01175.x

subject

Has Abstract

pub_date

2008-06-01 00:00:00

pages

223-30

issue

2

eissn

0378-1097

issn

1574-6968

pii

FML1175

journal_volume

283

pub_type

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