Systematic screening of LNA/2'-O-methyl chimeric derivatives of a TAR RNA aptamer.

Abstract:

:We synthesized and evaluated by surface plasmon resonance 64 LNA/2'-O-methyl sequences corresponding to all possible combinations of such residues in a kissing aptamer loop complementary to the 6-nt loop of the TAR element of HIV-1. Three combinations of LNA/2'-O-methyl nucleoside analogues where one or two LNA units are located on the 3' side of the aptamer loop display an affinity for TAR below 1nM, i.e. one order of magnitude higher than the parent RNA aptamer. One of these combinations inhibits the TAR-dependent luciferase expression in a cell assay.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Di Primo C,Rudloff I,Reigadas S,Arzumanov AA,Gait MJ,Toulmé JJ

doi

10.1016/j.febslet.2007.01.047

subject

Has Abstract

pub_date

2007-02-20 00:00:00

pages

771-4

issue

4

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(07)00089-0

journal_volume

581

pub_type

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