Larval selectivity for yeast species by Drosophila mojavensis in natural substrates.

abstract：:The expansion of machine learning to high-stakes application domains such as medicine, finance, and criminal justice, where making informed decisions requires clear understanding of the model, has increased the interest in interpretable machine learning. The widely used Classification and Regression Trees (CART) have ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Luna JM,Gennatas ED,Ungar LH,Eaton E,Diffenderfer ES,Jensen ST,Simone CB 2nd,Friedman JH,Solberg TD,Valdes G

更新日期：2019-10-01 00:00:00

abstract：:The glycine receptor (GlyR) is a pentameric ligand-gated ion channel (pLGIC) mediating inhibitory transmission in the nervous system. Its transmembrane domain (TMD) is the target of allosteric modulators such as general anesthetics and ethanol and is a major locus for hyperekplexic congenital mutations altering the al...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Moraga-Cid G,Sauguet L,Huon C,Malherbe L,Girard-Blanc C,Petres S,Murail S,Taly A,Baaden M,Delarue M,Corringer PJ

更新日期：2015-03-03 00:00:00

abstract：:To probe the structure of the gamma heavy chain of membrane IgG and the mRNA and gene segments that encode it, we have analyzed cDNA clones derived from a gamma 1 membrane RNA of B lymphoma 2PK-3. The nucleotide sequence of the clones indicated that membrane gamma 1 chains bear a COOH-terminal 71-residue segment that ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Tyler BM,Cowman AF,Gerondakis SD,Adams JM,Bernard O

更新日期：1982-03-01 00:00:00

abstract：:This paper investigates quantitatively the characteristics of the local folding code. The overlapping four-residue fragments which make up the amino acid sequences of 114 proteins are divided into classes on the basis of the physical properties of their constituent amino acids. The distribution of structural types ass...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Rackovsky S

更新日期：1993-01-15 00:00:00

abstract：:Plant steroid hormones, brassinosteroids (BRs), are of great importance for plant growth and development. BRs signal through a cell surface receptor kinase, BRI1, and a GSK3-like kinase, BIN2, to regulate the BES1/BZR1 family of transcription factors, which directly bind to target gene promoters to activate or repress...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Yu X,Li L,Li L,Guo M,Chory J,Yin Y

更新日期：2008-05-27 00:00:00

abstract：:Populations of jellyfish, Mastigias sp., landlocked in tropical marine lakes during the Holocene, show extreme genetic isolation (0.74 < or = phiST < or = 1.00), founder effects (genetic diversity: 0.000 < or = pi < or = 0.001), rapid morphological evolution, and behavioral adaptation. These results demonstrate incipi...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Dawson MN,Hamner WM

更新日期：2005-06-28 00:00:00

abstract：:Individuals homozygous for the C-C chemokine receptor type 5 gene with 32-bp deletions (CCR5Δ32) are resistant to HIV-1 infection. In this study, we generated induced pluripotent stem cells (iPSCs) homozygous for the naturally occurring CCR5Δ32 mutation through genome editing of wild-type iPSCs using a combination of ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ye L,Wang J,Beyer AI,Teque F,Cradick TJ,Qi Z,Chang JC,Bao G,Muench MO,Yu J,Levy JA,Kan YW

更新日期：2014-07-01 00:00:00

abstract：:The size and metabolic rate of cells affect processes from the molecular to the organismal level. We present a quantitative, theoretical framework for studying relationships among cell volume, cellular metabolic rate, body size, and whole-organism metabolic rate that helps reveal the feedback between these levels of o...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Savage VM,Allen AP,Brown JH,Gillooly JF,Herman AB,Woodruff WH,West GB

更新日期：2007-03-13 00:00:00

abstract：:The Ten-Eleven-Translocation 2 (TET2) gene encodes a member of TET family enzymes that alters the epigenetic status of DNA by oxidizing 5-methylcytosine to 5-hydroxymethylcytosine (5hmC). Somatic loss-of-function mutations of TET2 are frequently observed in patients with diverse myeloid malignancies, including myelody...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ko M,Bandukwala HS,An J,Lamperti ED,Thompson EC,Hastie R,Tsangaratou A,Rajewsky K,Koralov SB,Rao A

更新日期：2011-08-30 00:00:00

abstract：:The maturation of 5S RNA in Escherichia coli is poorly understood. Although it is known that large precursors of 5S RNA accumulate in mutant cells lacking the endoribonuclease-RNase E, almost nothing is known about how the mature 5' and 3' termini of these molecules are generated. We have examined 5S RNA maturation in...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Li Z,Deutscher MP

更新日期：1995-07-18 00:00:00

abstract：:Single molecule studies, at constant force, of the separation of double-stranded DNA into two separated single strands may provide information relevant to the dynamics of DNA replication. At constant applied force, theory predicts that the unzipped length as a function of time is characterized by jumps during which th...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Danilowicz C,Coljee VW,Bouzigues C,Lubensky DK,Nelson DR,Prentiss M

更新日期：2003-02-18 00:00:00

abstract：:Helicases are molecular motor enzymes that unwind and translocate nucleic acids. One of the central questions regarding helicase activity is whether the process of coupling ATP hydrolysis to DNA unwinding requires an oligomeric form of the enzyme. We have applied a pre-steady-state kinetics approach to address this qu...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Nanduri B,Byrd AK,Eoff RL,Tackett AJ,Raney KD

更新日期：2002-11-12 00:00:00

abstract：:The evolution of human languages is driven both by primitive biases present in the human sensorimotor systems and by cultural transmission among speakers. However, whether the design of the language faculty is further shaped by linguistic biological biases remains controversial. To address this question, we used near-...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gómez DM,Berent I,Benavides-Varela S,Bion RA,Cattarossi L,Nespor M,Mehler J

更新日期：2014-04-22 00:00:00

abstract：:Glutaredoxins (GRXs), also known as thioltransferases, use glutathione as a cofactor for reduction of disulfides in prokaryotes and eukaryotes. We demonstrate that the vaccinia virus O2L open reading frame encodes a functional GRX, as predicted by Johnson et al. [Johnson, G. P., Goebel, S. J., Perkus, M. E., Davis, S....

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ahn BY,Moss B

更新日期：1992-08-01 00:00:00

abstract：:The activation of Janus kinases (JAKs) is crucial for propagation of the proliferative response initiated by many cytokines. The proliferation of various cell lines, particularly those of hematopoietic origin, is also modulated by mediators of oxidative stress such as nitric oxide and thiol redox reagents. Herein we d...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Duhé RJ,Evans GA,Erwin RA,Kirken RA,Cox GW,Farrar WL

更新日期：1998-01-06 00:00:00

abstract：:HIV-1, the cause of AIDS, is composed of four phylogenetic lineages, groups M, N, O, and P, each of which resulted from an independent cross-species transmission event of simian immunodeficiency viruses (SIVs) infecting African apes. Although groups M and N have been traced to geographically distinct chimpanzee commun...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： D'arc M,Ayouba A,Esteban A,Learn GH,Boué V,Liegeois F,Etienne L,Tagg N,Leendertz FH,Boesch C,Madinda NF,Robbins MM,Gray M,Cournil A,Ooms M,Letko M,Simon VA,Sharp PM,Hahn BH,Delaporte E,Mpoudi Ngole E,Peeters M

更新日期：2015-03-17 00:00:00

abstract：:In this article, we address the problem of modeling generic features of structurally but not textually related DNA motifs, that is, motifs whose consensus sequences are entirely different but nevertheless share "metasequence features" reflecting similarities in the DNA-binding domains of their associated protein recog...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Xing EP,Karp RM

更新日期：2004-07-20 00:00:00

abstract：:When the human cDNA, isolated on the basis of homology to the murine carbonic anhydrase (CA) "Y" was expressed in COS cells, the human CA was targeted to and processed in mitochondria, as expected for CA-V. However, tissue distribution reported for the corresponding mouse CA Y mRNA was much more limited than that repo...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Nagao Y,Srinivasan M,Platero JS,Svendrowski M,Waheed A,Sly WS

更新日期：1994-10-25 00:00:00

abstract：:We present a model to explain how the neurosecretory system of aquatic mollusks generates their diversity of shell structures and pigmentation patterns. The anatomical and physiological basis of this model sets it apart from other models used to explain shape and pattern. The model reproduces most known shell shapes a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Boettiger A,Ermentrout B,Oster G

更新日期：2009-04-21 00:00:00

abstract：:An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacem...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Lang AS,Beatty JT

更新日期：2000-01-18 00:00:00

abstract：:Preclinical animal models have largely ignored the immune-suppressive mechanisms that are important in human cancers. The identification and use of such models should allow better predictions of successful human responses to immunotherapy. As a model for changes induced in nonmalignant cells by cancer, we examined T-c...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gorgun G,Ramsay AG,Holderried TA,Zahrieh D,Le Dieu R,Liu F,Quackenbush J,Croce CM,Gribben JG

更新日期：2009-04-14 00:00:00

abstract：:The preferential inactivation of the paternal X chromosome in extraembryonic cells during early mouse development is an example of parental imprinting, but it has not been studied at the transcriptional level because standard methods of measuring RNA levels do not allow detection of allele-specific RNAs in individual ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Singer-Sam J,Chapman V,LeBon JM,Riggs AD

更新日期：1992-11-01 00:00:00

abstract：:Anaerobic beta-galactoside transport in whole cells and membrane vesicles from E. coli ML 308-225 is coupled to the oxidation of alpha-glycerol-P or D-lactate with fumarate as an electron acceptor. Alternatively, anaerobic beta-galactoside transport may be coupled to the oxidation of formate utilizing nitrate as elect...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Konings WN,Kaback HR

更新日期：1973-12-01 00:00:00

abstract：:Biological polymers such as nucleic acids and proteins are constructed of only one-the d or l-of the two possible nonsuperimposable mirror images (enantiomers) of selected organic compounds. However, before the advent of life, it is generally assumed that chemical reactions produced 50:50 (racemic) mixtures of enantio...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Cooper G,Rios AC

更新日期：2016-06-14 00:00:00

abstract：:The concept of contagion has steadily expanded from its original grounding in epidemic disease to describe a vast array of processes that spread across networks, notably social phenomena such as fads, political opinions, the adoption of new technologies, and financial decisions. Traditional models of social contagion ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ugander J,Backstrom L,Marlow C,Kleinberg J

更新日期：2012-04-17 00:00:00

abstract：:The origin of vertebrate eyes is still enigmatic. The "frontal eye" of amphioxus, our most primitive chordate relative, has long been recognized as a candidate precursor to the vertebrate eyes. However, the amphioxus frontal eye is composed of simple ciliated cells, unlike vertebrate rods and cones, which display more...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Vopalensky P,Pergner J,Liegertova M,Benito-Gutierrez E,Arendt D,Kozmik Z

更新日期：2012-09-18 00:00:00

abstract：:Release of formylmethionine from the reticulocyte ribosomal substrate, f[(3)H]Met-tRNA.ribosome, is promoted by reticulocyte release factor (RF). The initial rate of this reaction is stimulated by GTP but inhibited by GDPCP. Formation of an RF.UA[(3)H]A(2).ribosome complex is a measure of the binding of reticulocyte R...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Tate WP,Beaudet AL,Caskey CT

更新日期：1973-08-01 00:00:00

abstract：:Antibody against carcinoembryonic antigen (CEA) was conjugated with p-[1,2-dicarba-closo-[1-3H]do-decaboran(12)-2-yl] benzenediazonium ion by an azo-coupling reaction, resulting in 30 boron atoms per IgG molecule with no loss of antibody protein. Antibody immunoreactivity was not appreciably affected by this conjugati...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Goldenberg DM,Sharkey RM,Primus FJ,Mizusawa E,Hawthorne MF

更新日期：1984-01-01 00:00:00

abstract：:The phosphoinositide 3-kinase (PI3K)/protein kinase B (Akt) signaling pathway was recently shown to negatively regulate LPS-induced acute inflammatory responses. We previously observed that the metabolic thiol antioxidant alpha-lipoic acid (LA) inhibits LPS-induced expression of cellular adhesion molecules and adheren...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Zhang WJ,Wei H,Hagen T,Frei B

更新日期：2007-03-06 00:00:00

abstract：:Endangered species recovery programs seek to restore populations to self-sustaining levels. Nonetheless, many recovering species require continuing management to compensate for persistent threats in their environment. Judging true recovery in the face of this management is often difficult, impeding thorough analysis o...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Finkelstein ME,Doak DF,George D,Burnett J,Brandt J,Church M,Grantham J,Smith DR

更新日期：2012-07-10 00:00:00