DNA unzipped under a constant force exhibits multiple metastable intermediates.

Abstract:

:Single molecule studies, at constant force, of the separation of double-stranded DNA into two separated single strands may provide information relevant to the dynamics of DNA replication. At constant applied force, theory predicts that the unzipped length as a function of time is characterized by jumps during which the strands separate rapidly, followed by long pauses where the number of separated base pairs remains constant. Here, we report previously uncharacterized observations of this striking behavior carried out on a number of identical single molecules simultaneously. When several single lambda phage molecules are subject to the same applied force, the pause positions are reproducible in each. This reproducibility shows that the positions and durations of the pauses in unzipping provide a sequence-dependent molecular fingerprint. For small forces, the DNA remains in a partially unzipped state for at least several hours. For larger forces, the separation is still characterized by jumps and pauses, but the double-stranded DNA will completely unzip in less than 30 min.

authors

Danilowicz C,Coljee VW,Bouzigues C,Lubensky DK,Nelson DR,Prentiss M

doi

10.1073/pnas.262789199

keywords:

subject

Has Abstract

pub_date

2003-02-18 00:00:00

pages

1694-9

issue

4

eissn

0027-8424

issn

1091-6490

pii

262789199

journal_volume

100

pub_type

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