Interactions of NF-kappaB with chromatin: the art of being at the right place at the right time.

Abstract:

:Transcription factors of the NF-kappaB family are essential regulators of the inflammatory and immune responses. The main 'switch' in NF-kappaB activation is cytoplasmic and leads to the release of NF-kappaB proteins from IkappaB molecules, specific inhibitors that prevent their nuclear accumulation. However, it is becoming increasingly apparent that in addition to this required activation step, both recruitment of NF-kappaB to target genes and NF-kappaB-induced transcriptional events after recruitment are actively controlled. Regulated recruitment of NF-kappaB to chromatin generates kinetic complexity in NF-kappaB-dependent gene induction and 'wires' NF-kappaB-regulated gene activity to simultaneously activated pathways and transcription factors.

journal_name

Nat Immunol

journal_title

Nature immunology

authors

Natoli G,Saccani S,Bosisio D,Marazzi I

doi

10.1038/ni1196

keywords:

subject

Has Abstract

pub_date

2005-05-01 00:00:00

pages

439-45

issue

5

eissn

1529-2908

issn

1529-2916

pii

ni1196

journal_volume

6

pub_type

杂志文章,评审
  • A Toll-like receptor 2-integrin beta3 complex senses bacterial lipopeptides via vitronectin.

    abstract::Toll-like receptor 2 (TLR2) initiates inflammation in response to bacterial lipopeptide (BLP). However, the molecular mechanisms enabling the detection of BLP by TLR2 are unknown. Here we investigated the interaction of BLP with human serum proteins and identified vitronectin as a BLP-recognition molecule. Vitronectin...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.1618

    authors: Gerold G,Abu Ajaj K,Bienert M,Laws HJ,Zychlinsky A,de Diego JL

    更新日期:2008-07-01 00:00:00

  • Author Correction: 'Stealth' corporate innovation: an emerging threat for therapeutic drug development.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature immunology

    pub_type: 已发布勘误

    doi:10.1038/s41590-019-0531-x

    authors: Mastellos DC,Blom AM,Connolly ES,Daha MR,Geisbrecht BV,Ghebrehiwet B,Gros P,Hajishengallis G,Holers VM,Huber-Lang M,Kinoshita T,Mollnes TE,Montgomery RA,Morgan BP,Nilsson B,Pio R,Ricklin D,Risitano AM,Taylor RP,Mant

    更新日期:2019-11-01 00:00:00

  • Defective mast cell effector functions in mice lacking the CRACM1 pore subunit of store-operated calcium release-activated calcium channels.

    abstract::CRACM1 (also called Orai1) constitutes the pore subunit of store-operated calcium release-activated calcium channels. A point mutation in the gene encoding CRACM1 is associated with severe combined immunodeficiency disease in humans. Here we generated CRACM1-deficient mice in which beta-galactosidase activity 'reporte...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni1550

    authors: Vig M,DeHaven WI,Bird GS,Billingsley JM,Wang H,Rao PE,Hutchings AB,Jouvin MH,Putney JW,Kinet JP

    更新日期:2008-01-01 00:00:00

  • Innate immune recognition of viral infection.

    abstract::Induction of the antiviral innate immune response depends on recognition of viral components by host pattern-recognition receptors. Members of the Toll-like receptor family have emerged as key sensors that recognize viral components such as nucleic acids. Toll-like receptor signaling results in the production of type ...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni1303

    authors: Kawai T,Akira S

    更新日期:2006-02-01 00:00:00

  • c-Maf controls immune responses by regulating disease-specific gene networks and repressing IL-2 in CD4+ T cells.

    abstract::The transcription factor c-Maf induces the anti-inflammatory cytokine IL-10 in CD4+ T cells in vitro. However, the global effects of c-Maf on diverse immune responses in vivo are unknown. Here we found that c-Maf regulated IL-10 production in CD4+ T cells in disease models involving the TH1 subset of helper T cells (m...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/s41590-018-0083-5

    authors: Gabryšová L,Alvarez-Martinez M,Luisier R,Cox LS,Sodenkamp J,Hosking C,Pérez-Mazliah D,Whicher C,Kannan Y,Potempa K,Wu X,Bhaw L,Wende H,Sieweke MH,Elgar G,Wilson M,Briscoe J,Metzis V,Langhorne J,Luscombe NM,O'Garra

    更新日期:2018-05-01 00:00:00

  • The transcriptional regulator Aire coopts the repressive ATF7ip-MBD1 complex for the induction of immunotolerance.

    abstract::The maintenance of immunological tolerance requires the deletion of self-reactive T cells in the thymus. The expression of genes encoding tissue-specific antigens (TSAs) by thymic epithelial cells is critical for this process and depends on activity of the transcriptional regulator Aire; however, the molecular mechani...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2820

    authors: Waterfield M,Khan IS,Cortez JT,Fan U,Metzger T,Greer A,Fasano K,Martinez-Llordella M,Pollack JL,Erle DJ,Su M,Anderson MS

    更新日期:2014-03-01 00:00:00

  • Mosaic nanoparticle display of diverse influenza virus hemagglutinins elicits broad B cell responses.

    abstract::The present vaccine against influenza virus has the inevitable risk of antigenic discordance between the vaccine and the circulating strains, which diminishes vaccine efficacy. This necessitates new approaches that provide broader protection against influenza. Here we designed a vaccine using the hypervariable recepto...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/s41590-018-0305-x

    authors: Kanekiyo M,Joyce MG,Gillespie RA,Gallagher JR,Andrews SF,Yassine HM,Wheatley AK,Fisher BE,Ambrozak DR,Creanga A,Leung K,Yang ES,Boyoglu-Barnum S,Georgiev IS,Tsybovsky Y,Prabhakaran MS,Andersen H,Kong WP,Baxa U,Zephi

    更新日期:2019-03-01 00:00:00

  • Regulation of T cell receptor-alpha gene recombination by transcription.

    abstract::Despite the longstanding correlation between transcription and variable-(diversity)-joining (V(D)J) recombination, it is unknown whether transcription itself can direct recombinase targeting. Here we show that blockade of transcriptional elongation through the mouse T cell receptor-alpha (Tcra) locus suppressed V(alph...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni1379

    authors: Abarrategui I,Krangel MS

    更新日期:2006-10-01 00:00:00

  • Influenza-induced monocyte-derived alveolar macrophages confer prolonged antibacterial protection.

    abstract::Despite the prevalence and clinical importance of influenza, its long-term effect on lung immunity is unclear. Here we describe that following viral clearance and clinical recovery, at 1 month after infection with influenza, mice are better protected from Streptococcus pneumoniae infection due to a population of monoc...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/s41590-019-0568-x

    authors: Aegerter H,Kulikauskaite J,Crotta S,Patel H,Kelly G,Hessel EM,Mack M,Beinke S,Wack A

    更新日期:2020-02-01 00:00:00

  • Sensing and alarm function of resident memory CD8⁺ T cells.

    abstract::CD8(+) T cells eliminate intracellular infections through two contact-dependent effector functions: cytolysis and secretion of antiviral cytokines. Here we identify the following additional function for memory CD8(+) T cells that persist at front-line sites of microbial exposure: to serve as local sensors of previousl...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2568

    authors: Schenkel JM,Fraser KA,Vezys V,Masopust D

    更新日期:2013-05-01 00:00:00

  • Two isoforms of otubain 1 regulate T cell anergy via GRAIL.

    abstract::The active ubiquitin E3 ligase GRAIL is crucial in the induction of CD4 T cell anergy. Here we show that GRAIL is associated with and regulated by two isoforms of the ubiquitin-specific protease otubain 1. In lethally irradiated mice reconstituted with bone marrow cells from T cell receptor-transgenic mice retrovirall...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni1017

    authors: Soares L,Seroogy C,Skrenta H,Anandasabapathy N,Lovelace P,Chung CD,Engleman E,Fathman CG

    更新日期:2004-01-01 00:00:00

  • Nonspecific effects of neonatal and infant vaccination: public-health, immunological and conceptual challenges.

    abstract::Vaccines can have nonspecific effects through their modulation of responses to infections not specifically targeted by the vaccine. However, lack of knowledge about the underlying immunological mechanisms and molecular cause-and-effect relationships prevent use of this potentially powerful early-life intervention to i...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2961

    authors: Aaby P,Kollmann TR,Benn CS

    更新日期:2014-10-01 00:00:00

  • From IL-2 to IL-37: the expanding spectrum of anti-inflammatory cytokines.

    abstract::Feedback regulatory circuits provided by regulatory T cells (T(reg) cells) and suppressive cytokines are an intrinsic part of the immune system, along with effector functions. Here we discuss some of the regulatory cytokines that have evolved to permit tolerance to components of self as well as the eradication of path...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni.2406

    authors: Banchereau J,Pascual V,O'Garra A

    更新日期:2012-10-01 00:00:00

  • The nuclear receptor LXRα controls the functional specialization of splenic macrophages.

    abstract::Macrophages are professional phagocytic cells that orchestrate innate immune responses and have considerable phenotypic diversity at different anatomical locations. However, the mechanisms that control the heterogeneity of tissue macrophages are not well characterized. Here we found that the nuclear receptor LXRα was ...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2622

    authors: A-Gonzalez N,Guillen JA,Gallardo G,Diaz M,de la Rosa JV,Hernandez IH,Casanova-Acebes M,Lopez F,Tabraue C,Beceiro S,Hong C,Lara PC,Andujar M,Arai S,Miyazaki T,Li S,Corbi AL,Tontonoz P,Hidalgo A,Castrillo A

    更新日期:2013-08-01 00:00:00

  • Regulation of lymphocyte development by Notch signaling.

    abstract::Notch molecules are well conserved from Drosophila melanogaster to mammals and regulate a broad spectrum of various cell lineage commitment processes. Recent studies using inhibitors, transgenic mice and conditional loss-of-function approaches have demonstrated essential roles for Notch signaling in the differentiatio...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni1453

    authors: Tanigaki K,Honjo T

    更新日期:2007-05-01 00:00:00

  • Affinity for self antigen selects Treg cells with distinct functional properties.

    abstract::The manner in which regulatory T cells (Treg cells) control lymphocyte homeostasis is not fully understood. We identified two Treg cell populations with differing degrees of self-reactivity and distinct regulatory functions. We found that GITR(hi)PD-1(hi)CD25(hi) (Triple(hi)) Treg cells were highly self-reactive and c...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.3522

    authors: Wyss L,Stadinski BD,King CG,Schallenberg S,McCarthy NI,Lee JY,Kretschmer K,Terracciano LM,Anderson G,Surh CD,Huseby ES,Palmer E

    更新日期:2016-09-01 00:00:00

  • Somatic mutation hotspots correlate with DNA polymerase eta error spectrum.

    abstract::Mutational spectra analysis of 15 immunoglobulin genes suggested that consensus motifs RGYW and WA were universal descriptors of somatic hypermutation. Highly mutable sites, "hotspots", that matched WA were preferentially found in one DNA strand and RGYW hotspots were found in both strands. Analysis of base-substituti...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/88732

    authors: Rogozin IB,Pavlov YI,Bebenek K,Matsuda T,Kunkel TA

    更新日期:2001-06-01 00:00:00

  • Origins of the T(H)1-T(H)2 model: a personal perspective.

    abstract::Robert L. Coffman recounts how his work on immunoglobulin E regulation along with data from Tim Mosmann on the functional heterogeneity of T cell clones led to the T helper type 1-T helper type 2 hypothesis. ...

    journal_title:Nature immunology

    pub_type: 传,历史文章,杂志文章

    doi:10.1038/ni0606-539

    authors: Coffman RL

    更新日期:2006-06-01 00:00:00

  • Viral interference with antigen presentation.

    abstract::CD8+ T cells play an important role in immunity to viruses. Just how important these cells are is demonstrated by the evolution of viral strategies for blocking the generation or display of peptide-major histocompatibility complex class I complexes on the surfaces of virus-infected cells. Here, we focus on viral inter...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni1102-1019

    authors: Yewdell JW,Hill AB

    更新日期:2002-11-01 00:00:00

  • CCR5 provides a signal for microbial induced production of IL-12 by CD8 alpha+ dendritic cells.

    abstract::The activation of dendritic cells (DC) to produce interleukin 12 (IL-12) is thought to be a key step in the initiation of cell-mediated immunity to intracellular pathogens. Here we show that ligation of the C-C chemokine receptor (CCR) 5 can provide a major signal for the induction of IL-12 synthesis by the CD8 alpha+...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/76957

    authors: Aliberti J,Reis e Sousa C,Schito M,Hieny S,Wells T,Huffnagle GB,Sher A

    更新日期:2000-07-01 00:00:00

  • Upregulation of the CLIP self peptide on mature dendritic cells antagonizes T helper type 1 polarization.

    abstract::Dendritic cells (DCs) initiate and regulate immunity against foreign and self antigens. Here we identified more than 200 individual major histocompatibility complex class II-associated peptides on human DCs and found that mature DCs selectively upregulated the self peptide CLIP. CLIP cosegregated together with foreign...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni1108

    authors: Röhn TA,Boes M,Wolters D,Spindeldreher S,Müller B,Langen H,Ploegh H,Vogt AB,Kropshofer H

    更新日期:2004-09-01 00:00:00

  • Natural killer cell activation in mice and men: different triggers for similar weapons?

    abstract::The signaling pathways that regulate B and T lymphocytes are remarkably conserved between humans and mice. However, recent evidence suggests that the pathways regulating natural killer (NK) cell activation may actually differ between these two species. We discuss the controversies in the field and propose that this di...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni0902-807

    authors: Colucci F,Di Santo JP,Leibson PJ

    更新日期:2002-09-01 00:00:00

  • Integration of the movement of signaling microclusters with cellular motility in immunological synapses.

    abstract::Immune synapses form between T cells and antigen-presenting cells (APCs). Increasing evidence suggests synapses must form flexibly to accommodate ongoing motility and displacement of the synapse. Here, time-lapse total internal reflection fluorescence (TIRF) microscopy showed that signaling via the T cell antigen rece...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2364

    authors: Beemiller P,Jacobelli J,Krummel MF

    更新日期:2012-07-01 00:00:00

  • Id2 and Id3 maintain the regulatory T cell pool to suppress inflammatory disease.

    abstract::Regulatory T (Treg) cells suppress the development of inflammatory disease, but our knowledge of transcriptional regulators that control this function remains incomplete. Here we show that expression of Id2 and Id3 in Treg cells was required to suppress development of fatal inflammatory disease. We found that T cell a...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2928

    authors: Miyazaki M,Miyazaki K,Chen S,Itoi M,Miller M,Lu LF,Varki N,Chang AN,Broide DH,Murre C

    更新日期:2014-08-01 00:00:00

  • Immunometabolism of regulatory T cells.

    abstract::The bidirectional interaction between the immune system and whole-body metabolism has been well recognized for many years. Via effects on adipocytes and hepatocytes, immune cells can modulate whole-body metabolism (in metabolic syndromes such as type 2 diabetes and obesity) and, reciprocally, host nutrition and commen...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni.3466

    authors: Newton R,Priyadharshini B,Turka LA

    更新日期:2016-05-19 00:00:00

  • Loss of Ikaros DNA-binding function confers integrin-dependent survival on pre-B cells and progression to acute lymphoblastic leukemia.

    abstract::Deletion of the DNA-binding domain of the transcription factor Ikaros generates dominant-negative isoforms that interfere with its activity and correlate with poor prognosis in human precursor B cell acute lymphoblastic leukemia (B-ALL). Here we found that conditional inactivation of the Ikaros DNA-binding domain in e...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2821

    authors: Joshi I,Yoshida T,Jena N,Qi X,Zhang J,Van Etten RA,Georgopoulos K

    更新日期:2014-03-01 00:00:00

  • Bcl-6 mediates the germinal center B cell phenotype and lymphomagenesis through transcriptional repression of the DNA-damage sensor ATR.

    abstract::Antibody specificity and diversity is generated in B cells during germinal center maturation through clonal expansion while they undergo class-switch recombination and somatic hypermutation. Here we demonstrate that the transcriptional repressor Bcl-6 mediates this phenotype by directly repressing ATR in centroblasts ...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni1478

    authors: Ranuncolo SM,Polo JM,Dierov J,Singer M,Kuo T,Greally J,Green R,Carroll M,Melnick A

    更新日期:2007-07-01 00:00:00

  • A rheostat for immune responses: the unique properties of PD-1 and their advantages for clinical application.

    abstract::PD-1, a negative coreceptor expressed on antigen-stimulated T cells and B cells, seems to serve as a 'rheostat' of the immune response. The molecular mechanisms of the functions of PD-1, in conjunction with the mild, chronic and strain-specific autoimmune phenotypes of PD-1-deficient mice, in contrast to the devastati...

    journal_title:Nature immunology

    pub_type: 杂志文章,评审

    doi:10.1038/ni.2762

    authors: Okazaki T,Chikuma S,Iwai Y,Fagarasan S,Honjo T

    更新日期:2013-12-01 00:00:00

  • RabGEF1 is a negative regulator of mast cell activation and skin inflammation.

    abstract::Mast cell activation induced by aggregation of Fc epsilon RI receptors with immunoglobulin E and antigen is mediated through the activation of multiple protein kinase cascades. Here we report that the regulatory protein RabGEF1 bound to Ras and negatively regulated Ras activation and its 'downstream' effector pathways...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni1093

    authors: Tam SY,Tsai M,Snouwaert JN,Kalesnikoff J,Scherrer D,Nakae S,Chatterjea D,Bouley DM,Galli SJ

    更新日期:2004-08-01 00:00:00

  • AHR drives the development of gut ILC22 cells and postnatal lymphoid tissues via pathways dependent on and independent of Notch.

    abstract::Innate lymphoid cells (ILCs) of the ILC22 type protect the intestinal mucosa from infection by secreting interleukin 22 (IL-22). ILC22 cells include NKp46(+) and lymphoid tissue-inducer (LTi)-like subsets that express the aryl hydrocarbon receptor (AHR). Here we found that Ahr(-/-) mice had a considerable deficit in I...

    journal_title:Nature immunology

    pub_type: 杂志文章

    doi:10.1038/ni.2187

    authors: Lee JS,Cella M,McDonald KG,Garlanda C,Kennedy GD,Nukaya M,Mantovani A,Kopan R,Bradfield CA,Newberry RD,Colonna M

    更新日期:2011-11-20 00:00:00