Identification and mapping of human saphenous vein medial smooth muscle proteins by two-dimensional polyacrylamide gel electrophoresis.

Abstract:

:Changing smooth muscle phenotype and abnormal cell proliferation are important features of vascular pathology, including the failure of saphenous vein bypass grafts. We have characterised and mapped protein expression in human saphenous vein medial smooth muscle, using two-dimensional (2-D) polyacrylamide gel electrophoresis. The 2-D system comprised a nonlinear immobilised pH 3-10 gradient in the first dimension (separating proteins with isoelectric point values between pH 3-10), and 12%T total gel concentration sodium dodecyl sulphate polyacrylamide gel electrophoresis in the second dimension (separating proteins in the range 14,000-200,000 Daltons). Using a combination of peptide mass fingerprinting by matrix-assisted laser desorption/ionisation-time of flight mass spectrometry and partial amino acid sequencing by nanospray tandem mass spectrometry, a subset of 149 protein spots was analysed, with 129 protein spots being identified and mapped. The data presented here are an important addition to the limited knowledge of venous medial smooth muscle protein expression in vivo. Our protein map will facilitate the identification of proteins differentially expressed in human saphenous vein bypass grafts. In turn, this may lead to the elucidation of molecular events involved in saphenous vein bypass graft failure. The map should also provide a basis for comparative studies of protein expression in vascular smooth muscle of varying origins.

journal_name

Proteomics

journal_title

Proteomics

authors

McGregor E,Kempster L,Wait R,Welson SY,Gosling M,Dunn MJ,Powel JT

doi

10.1002/1615-9861(200111)1:11<1405::AID-PROT1405>3

subject

Has Abstract

pub_date

2001-11-01 00:00:00

pages

1405-14

issue

11

eissn

1615-9853

issn

1615-9861

journal_volume

1

pub_type

杂志文章
  • A proteomic approach to verify in vivo expression of a novel gamma-gliadin containing an extra cysteine residue.

    abstract::Gliadins and glutenins are the main protein fractions present in wheat gluten. They are responsible for technological and nutritional quality of wheat based products. In particular, glutenins are mainly responsible for dough visco-elastic properties, whereas gliadins confer extensibility to dough and are the most impo...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200500236

    authors: Ferrante P,Masci S,D'Ovidio R,Lafiandra D,Volpi C,Mattei B

    更新日期:2006-03-01 00:00:00

  • A rare and often unrecognized cerebromeningitis and hemodynamic disorder: a major cause of sudden death in somatic cell cloned piglets.

    abstract::In this study, we generated 40 somatic cell cloned (scNT) piglets. Of these, five piglets were stillborn, 22 scNT piglets died suddenly within the first week of life, and 1 piglet died after 40 days. Twelve scNT piglets are still healthy. The birth weights of compromised scNT piglets in comparison with those of normal...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401079

    authors: Park MR,Cho SK,Lee SY,Choi YJ,Park JY,Kwon DN,Son WJ,Paik SS,Kim T,Han YM,Kim JH

    更新日期:2005-05-01 00:00:00

  • Versatile protein microarray based on carbohydrate-binding modules.

    abstract::Non-DNA microarrays, such as protein, peptide and small molecule microarrays, can potentially revolutionize the high-throughput screening tools currently used in basic and pharmaceutical research. However, fundamental obstacles remain that limit their rapid and widespread implementation as an alternative bioanalytical...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401078

    authors: Ofir K,Berdichevsky Y,Benhar I,Azriel-Rosenfeld R,Lamed R,Barak Y,Bayer EA,Morag E

    更新日期:2005-05-01 00:00:00

  • Proteomics of aluminum tolerance in plants.

    abstract::Aluminum (Al) toxicity is a major constraint for plant root development and growth as well as crop yield in acidic soils, which constitute approximately 40% of the potentially arable lands worldwide. The mechanisms of Al tolerance in plants are not well understood. As a whole systems approach, proteomic techniques hav...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.201300252

    authors: Zheng L,Lan P,Shen RF,Li WF

    更新日期:2014-03-01 00:00:00

  • Quantitative proteomics of heavy metal stress responses in Sydney rock oysters.

    abstract::Currently, there are few predictive biomarkers in key biomonitoring species, such as oysters, that can detect heavy metal pollution in coastal waterways. Several attributes make oysters superior to other organisms for positive biomonitoring of heavy metal pollution. In particular, they are filter feeders with a high c...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201100417

    authors: Muralidharan S,Thompson E,Raftos D,Birch G,Haynes PA

    更新日期:2012-03-01 00:00:00

  • Large-scale identification of proteins in human salivary proteome by liquid chromatography/mass spectrometry and two-dimensional gel electrophoresis-mass spectrometry.

    abstract::Human saliva contains a large number of proteins and peptides (salivary proteome) that help maintain homeostasis in the oral cavity. Global analysis of human salivary proteome is important for understanding oral health and disease pathogenesis. In this study, large-scale identification of salivary proteins was demonst...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401037

    authors: Hu S,Xie Y,Ramachandran P,Ogorzalek Loo RR,Li Y,Loo JA,Wong DT

    更新日期:2005-04-01 00:00:00

  • Proteome and phosphoproteome analysis of chromatin associated proteins in rice (Oryza sativa).

    abstract::The eukaryotic chromatin/chromosome stores genomic information, controls genetic material distribution, and plays an essential role in the establishment and maintenance of spatial and temporal gene expression profile. Despite over a century of research, the protein composition and higher level structure of chromatin s...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200700580

    authors: Tan F,Li G,Chitteti BR,Peng Z

    更新日期:2007-12-01 00:00:00

  • The making of an embryo in a basal metazoan: Proteomic analysis in the sea anemone Nematostella vectensis.

    abstract::Cnidarians are widely distributed basal metazoans that play an important role in the marine ecosystem. Their genetic diversity and dispersal depends on successful oogenesis, fertilization and embryogenesis. To understand the processes that lead to successful embryogenesis in these basal organisms, we conducted compara...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201500255

    authors: Levitan S,Sher N,Brekhman V,Ziv T,Lubzens E,Lotan T

    更新日期:2015-12-01 00:00:00

  • Proteome analysis of hepatocellular carcinoma cell strains, MHCC97-H and MHCC97-L, with different metastasis potentials.

    abstract::To better understand the mechanism underlying hepatocellular carcinoma (HCC) metastasis and to search for potential markers for HCC prognosis, differential proteome analysis on two HCC cell strains with high and low metastatic potentials, MHCC97-H and MHCC97-L, was conducted using two-dimensional (2-D) gel electrophor...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200300653

    authors: Ding SJ,Li Y,Shao XX,Zhou H,Zeng R,Tang ZY,Xia QC

    更新日期:2004-04-01 00:00:00

  • CD28 stimulation regulates its association with N-ethylmaleimide-sensitive fusion protein and other proteins involved in vesicle sorting.

    abstract::CD28 delivers a co-stimulatory signal for T cell antigen receptor induced activation of T cells through a mechanism which remains mostly elusive to date. In order to try and gain insight into CD28 function, we therefore applied state-of-the-art mass spectrometric protein identification technology to the analysis of CD...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/1615-9861(200101)1:1<70::AID-PROT70>3.0.CO

    authors: Heller M,Watts JD,Aebersold R

    更新日期:2001-01-01 00:00:00

  • MassSieve: panning MS/MS peptide data for proteins.

    abstract::We present MassSieve, a Java-based platform for visualization and parsimony analysis of single and comparative LC-MS/MS database search engine results. The success of mass spectrometric peptide sequence assignment algorithms has led to the need for a tool to merge and evaluate the increasing data set sizes that result...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200900370

    authors: Slotta DJ,McFarland MA,Markey SP

    更新日期:2010-08-01 00:00:00

  • Characterization of Phleum pratense pollen extracts by 2-D DIGE and allergen immunoreactivity.

    abstract::The allergen content of standardized pollen material is crucial for an effective diagnosis and treatment. However, variations in IgE reactivities of allergic patients to different preparations of Phleum pratense pollen have been reported. In order to define and directly compare the allergen composition of pollen prepa...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201000451

    authors: Schmidt H,Gelhaus C,Nebendahl M,Janssen O,Petersen A

    更新日期:2010-12-01 00:00:00

  • Mass spectrometry-based immuno-precipitation proteomics - the user's guide.

    abstract::Immuno-precipitation (IP) experiments using MS provide a sensitive and accurate way of characterising protein complexes and their response to regulatory mechanisms. Differences in stoichiometry can be determined as well as the reliable identification of specific binding partners. The quality control of IP and protein ...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201000548

    authors: ten Have S,Boulon S,Ahmad Y,Lamond AI

    更新日期:2011-03-01 00:00:00

  • Designed synthesis of fluorous-functionalized magnetic mesoporous microspheres for specific enrichment of phosphopeptides with fluorous derivatization.

    abstract::In this work, for the first time, perfluorinated magnetic mesoporous microspheres were designed and synthesized for the highly specific enrichment of fluorous-derivatized phosphopeptides through the unique fluorine-fluorine interactions. The perfluorinated magnetic mesoporous microspheres were prepared through a surfa...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201500323

    authors: Zhao M,Deng C

    更新日期:2016-04-01 00:00:00

  • A comprehensive dictionary of protein accession codes for complete protein accession identifier alias resolving.

    abstract::In mass spectrometry-based proteomics, protein identification results usually consist of peptide sequences and database-dependent accession identifiers of the matching proteins. Often certain annotations are only available in particular databases that in turn must be queried by a certain identifier. In order to simpli...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200600018

    authors: Boehm AM,Sickmann A

    更新日期:2006-08-01 00:00:00

  • Identification of caspase-3 degradome by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionization-time of flight analysis.

    abstract::The activation of caspases is a critical event for the execution phase of programmed cell death. Caspases are highly specific in their ability to activate or inhibit many crucial proteins in the cell via site-specific cleavage. To date, more than 60 proteins have been shown to be substrates of one or more caspases in ...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200400979

    authors: Lee AY,Park BC,Jang M,Cho S,Lee DH,Lee SC,Myung PK,Park SG

    更新日期:2004-11-01 00:00:00

  • Proteomic analysis of plasma from rats following total parenteral nutrition-induced liver injury.

    abstract::Total parenteral nutrition (TPN) is provided as the primary nitrogen source to manage patients with intestinal failure who were not able to sustain themselves on enteral feeds. The most common complication of long-term TPN use is hepatitis. A proteomic approach was used to identify proteins that are differentially exp...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201500128

    authors: Tsai JJ,Kuo HC,Lee KF,Tsai TH

    更新日期:2015-11-01 00:00:00

  • FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification.

    abstract::FindPept (http://www.expasy.org/tools/findpept.html) is a software tool designed to identify the origin of peptide masses obtained by peptide mass fingerprinting which are not matched by existing protein identification tools. It identifies masses resulting from unspecific proteolytic cleavage, missed cleavage, proteas...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/1615-9861(200210)2:10<1435::AID-PROT1435>3

    authors: Gattiker A,Bienvenut WV,Bairoch A,Gasteiger E

    更新日期:2002-10-01 00:00:00

  • An approach to remove albumin for the proteomic analysis of low abundance biomarkers in human serum.

    abstract::Proteomic technologies are being used to discover and identify disease-associated biomarkers. The application of these technologies in the search for potential diagnostic/prognostic biomarkers in the serum of patients has been limited by the presence of highly abundant albumin and immunoglobulins that constitute appro...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200300465

    authors: Ahmed N,Barker G,Oliva K,Garfin D,Talmadge K,Georgiou H,Quinn M,Rice G

    更新日期:2003-10-01 00:00:00

  • Quantitative proteomics analysis of leaves from two Sedum alfredii (Crassulaceae) populations that differ in cadmium accumulation.

    abstract::Due to their extraordinary capacity to hypertolerate and hyperaccumulate heavy metals in above-ground tissues, hyperaccumulator plant species have gained wide attention from researchers seeking biotechnologies to manage environmental heavy metal pollution. However, the molecular basis of hyperaccumulation is still far...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201600456

    authors: Zhang Z,Zhou H,Yu Q,Li Y,Mendoza-Cózatl DG,Qiu B,Liu P,Chen Q

    更新日期:2017-05-01 00:00:00

  • Determination of the site-specific and isoform-specific glycosylation in human plasma-derived antithrombin by IEF and capillary HPLC-ESI-MS/MS.

    abstract::The glycan structures of the major and more than ten minor populated isoforms of antithrombin (AT) were determined after separation of the isoforms by IEF using IPG strips. The bands excised from the gel were reduced, derivatized by iodoacetamide and submitted to tryptic digestion. The digest was analyzed by RP-HPLC-E...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401238

    authors: Plematl A,Demelbauer UM,Josic D,Rizzi A

    更新日期:2005-10-01 00:00:00

  • A general precursor ion-like scanning mode on quadrupole-TOF instruments compatible with chromatographic separation.

    abstract::MS protein identification and quantitation are key proteomic techniques in biological research. Besides identification of proteins, MS is used increasingly to characterize secondary protein modifications. This often requires trimming the analytical strategy to a specific type of modification. Direct analysis of protei...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200501332

    authors: Niggeweg R,Köcher T,Gentzel M,Buscaino A,Taipale M,Akhtar A,Wilm M

    更新日期:2006-01-01 00:00:00

  • Does Intrinsic Disorder in Proteins Favor Their Interaction with Lipids?

    abstract::Intrinsically disordered proteins (IDPs) are implicated in a range of human diseases, some of which are associated with the ability to bind to lipids. Although the presence of solvent-exposed hydrophobic regions in IDPs should favor their interactions with low-molecular-weight hydrophobic/amphiphilic compounds, this h...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201800098

    authors: Deryusheva E,Nemashkalova E,Galloux M,Richard CA,Eléouët JF,Kovacs D,Van Belle K,Tompa P,Uversky V,Permyakov S

    更新日期:2019-03-01 00:00:00

  • N-Terminal methylation of proteasome subunit Rpt1 in yeast.

    abstract::The 26S proteasome is a multicatalytic protease complex that degrades ubiquitinated proteins in eukaryotic cells. It consists of a proteolytic core (the 20S proteasome) as well as regulatory particles, which contain six ATPase (Rpt) subunits involved in unfolding and translocation of substrates to the catalytic chambe...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201300207

    authors: Kimura Y,Kurata Y,Ishikawa A,Okayama A,Kamita M,Hirano H

    更新日期:2013-11-01 00:00:00

  • Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques.

    abstract::More than 300 different types of protein post-translational modifications (PTMs) have been described, many of which are known to have pivotal roles in cellular physiology and disease. Nevertheless, only a handful of PTMs have been extensively investigated at the proteome level. Knowledge of protein substrates and thei...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.200900398

    authors: Zhao Y,Jensen ON

    更新日期:2009-10-01 00:00:00

  • Sarcopenia: Tilting the Balance of Protein Homeostasis.

    abstract::Sarcopenia, defined as age-associated decline of muscle mass and function, is a risk factor for mortality and disability, and comorbid with several chronic diseases such as type II diabetes and cardiovascular diseases. Clinical trials showed that nutritional supplements had positive effects on muscle mass, but not on ...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.201800411

    authors: Tan KT,Ang SJ,Tsai SY

    更新日期:2020-03-01 00:00:00

  • Analysis of earthworm Eisenia fetida proteomes during cadmium exposure: An ecotoxicoproteomics approach.

    abstract::Identification of differential proteomic responses to cadmium (Cd) would provide a means for better understanding the survival mechanisms of the earthworm, Eisenia fetida, living in a Cd-polluted environment, and the stress responses can be assessed by ecotoxiptoromics approaches. Extracts of whole earthworm collected...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201000209

    authors: Wang X,Chang L,Sun Z,Zhang Y,Yao L

    更新日期:2010-12-01 00:00:00

  • A structure-based strategy for discovery of small ligands binding to functionally unknown proteins: combination of in silico screening and surface plasmon resonance measurements.

    abstract::In the postgenomic era, many researchers and organizations have been engaged in structural and functional analyses of proteins. As a part of these efforts, searching for small organic compounds that bind specifically to target proteins is quite important. In this study, we have developed a rational strategy for ligand...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401032

    authors: Yoshitani N,Satou K,Saito K,Suzuki S,Hatanaka H,Seki M,Shinozaki K,Hirota H,Yokoyama S

    更新日期:2005-04-01 00:00:00

  • Expanding the mouse embryonic stem cell proteome: combining three proteomic approaches.

    abstract::The current study used three different proteomic strategies, which differed by their extent of intact protein separation, to examine the proteome of a pluripotent mouse embryonic stem cell line, R1. Proteins from whole-cell lysates were subjected either to 2-D-LC, or 1-DE, or were unfractionated prior to enzymatic dig...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201000039

    authors: Gundry RL,Tchernyshyov I,Sheng S,Tarasova Y,Raginski K,Boheler KR,Van Eyk JE

    更新日期:2010-07-01 00:00:00

  • Proteomics, nanotechnology and molecular diagnostics.

    abstract::Sequencing of the human genome opened the way to the exploration of the proteome and this has lead to the identification of large numbers of proteins in complex biological samples. The identification of diagnostic patterns in samples taken from patients to aid diagnosis is in the early stages of development. The solut...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.200700665

    authors: Johnson CJ,Zhukovsky N,Cass AE,Nagy JM

    更新日期:2008-02-01 00:00:00