Quantitative proteomics analysis of leaves from two Sedum alfredii (Crassulaceae) populations that differ in cadmium accumulation.

Abstract:

:Due to their extraordinary capacity to hypertolerate and hyperaccumulate heavy metals in above-ground tissues, hyperaccumulator plant species have gained wide attention from researchers seeking biotechnologies to manage environmental heavy metal pollution. However, the molecular basis of hyperaccumulation is still far from being fully understood. Here, we used iTRAQ to perform a quantitative proteomics study of the leaves of Sedum alfredii (Crassulaceae) from hyperaccumulating population (HP) and non-hyperaccumulating population (NHP). A total of 248 proteins had constitutively higher levels in HP leaves than in NHP leaves. Cadmium (Cd) treatment led to the induction of 13 proteins in HP leaves and 33 proteins in NHP leaves. Two proteins were induced by Cd in both HP leaves and NHP leaves. The annotations for many of the proteins that were higher in HP leaves and proteins that were induced by Cd treatments were associated with vacuolar sequestration, cell wall/membrane modification, and plant defense. In addition to establishing a global empirical foundation for the study of proteins in S. alfredii, our findings relating to the differential constitutive and inducible expression of proteins open potential new research avenues and bolster previously reported suppositions about Cd hyperaccumulation in hyperaccumulator plants.

journal_name

Proteomics

journal_title

Proteomics

authors

Zhang Z,Zhou H,Yu Q,Li Y,Mendoza-Cózatl DG,Qiu B,Liu P,Chen Q

doi

10.1002/pmic.201600456

subject

Has Abstract

pub_date

2017-05-01 00:00:00

pages

e1600456

issue

10

eissn

1615-9853

issn

1615-9861

journal_volume

17

pub_type

杂志文章
  • Arrestin-Domain Containing Protein 1 (Arrdc1) Regulates the Protein Cargo and Release of Extracellular Vesicles.

    abstract::Extracellular vesicles (EVs) are lipid-bilayered vesicles that are released by multiple cell types and contain nucleic acids and proteins. Very little is known about how the cargo is packaged into EVs. Ubiquitination of proteins is a key posttranslational modification that regulates protein stability and trafficking t...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201800266

    authors: Anand S,Foot N,Ang CS,Gembus KM,Keerthikumar S,Adda CG,Mathivanan S,Kumar S

    更新日期:2018-09-01 00:00:00

  • Proteomics, nanotechnology and molecular diagnostics.

    abstract::Sequencing of the human genome opened the way to the exploration of the proteome and this has lead to the identification of large numbers of proteins in complex biological samples. The identification of diagnostic patterns in samples taken from patients to aid diagnosis is in the early stages of development. The solut...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.200700665

    authors: Johnson CJ,Zhukovsky N,Cass AE,Nagy JM

    更新日期:2008-02-01 00:00:00

  • Protein profile in neuroblastoma cells incubated with S- and R-enantiomers of ibuprofen by iTRAQ-coupled 2-D LC-MS/MS analysis: possible action of induced proteins on Alzheimer's disease.

    abstract::Ibuprofen is a member of the proprionic acid group of nonsteroidal anti-inflammatory drugs (NSAID), with the S-enantiomer being more active than the R-enantiomer. It has been shown to display protective effects against neuroinflammation, which is linked to the pathogenesis of several neurodegenerative disorders, inclu...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200700556

    authors: Zhang J,Sui J,Ching CB,Chen WN

    更新日期:2008-04-01 00:00:00

  • Temozolomide-modulated glioma proteome: role of interleukin-1 receptor-associated kinase-4 (IRAK4) in chemosensitivity.

    abstract::The current treatment for glioblastoma includes temozolomide (TMZ) chemotherapy, yet the mechanism of action of TMZ is not thoroughly understood. Here, we investigated the TMZ-induced changes in the proteome of the glioma-derived cell line (U251) by 2D DIGE. We found 95 protein spots to be significantly altered in the...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201200261

    authors: Kumar DM,Patil V,Ramachandran B,Nila MV,Dharmalingam K,Somasundaram K

    更新日期:2013-07-01 00:00:00

  • Proteome analysis of porcine epidemic diarrhea virus (PEDV)-infected Vero cells.

    abstract::Porcine epidemic diarrhea virus (PEDV) causes an acute, highly contagious, and devastating viral enteric disease with a high mortality rate in suckling pigs. A large-scale outbreak of PED occurred in China in 2010, with PEDV emerging in the United States in 2013 and spreading rapidly, posing significant economic and p...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201400458

    authors: Zeng S,Zhang H,Ding Z,Luo R,An K,Liu L,Bi J,Chen H,Xiao S,Fang L

    更新日期:2015-06-01 00:00:00

  • Proteomic approach to identify acute phase response-related proteins with low molecular weight in loach skin following injury.

    abstract::Proteome analysis by two-dimensional gel electrophoresis (2-DE) together with mass spectrometry was applied to screen acute phase response (APR)-related proteins with low molecular weight in loach skin following injury. Furthermore, Western blotting and function tests were applied to confirm the results obtained from ...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200300864

    authors: Peng X,Wu Y,Chen J,Wang S

    更新日期:2004-12-01 00:00:00

  • Identification of G2/M targets for the MAP kinase pathway by functional proteomics.

    abstract::Although the importance of the extracellular signal-regulated kinase (ERK) pathway in regulating the transition from G1 to S has been extensively studied, its role during the G2/M transition is less well understood. Previous reports have shown that inhibition of the ERK pathway in mammalian cells delays entry as well ...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200600365

    authors: Roberts EC,Hammond K,Traish AM,Resing KA,Ahn NG

    更新日期:2006-08-01 00:00:00

  • A proteomic approach to verify in vivo expression of a novel gamma-gliadin containing an extra cysteine residue.

    abstract::Gliadins and glutenins are the main protein fractions present in wheat gluten. They are responsible for technological and nutritional quality of wheat based products. In particular, glutenins are mainly responsible for dough visco-elastic properties, whereas gliadins confer extensibility to dough and are the most impo...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200500236

    authors: Ferrante P,Masci S,D'Ovidio R,Lafiandra D,Volpi C,Mattei B

    更新日期:2006-03-01 00:00:00

  • Differential protein composition of bovine whey: a comparison of whey from healthy animals and from those with clinical mastitis.

    abstract::During clinical mastitis in dairy cows, the quantity of milk produced decreases and the composition of the milk is altered. As the severity of inflammation associated with the disease increases, the chemical composition of milk approaches that of blood as a consequence of increased permeability of the blood mammary ba...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200300723

    authors: Hogarth CJ,Fitzpatrick JL,Nolan AM,Young FJ,Pitt A,Eckersall PD

    更新日期:2004-07-01 00:00:00

  • Identification and characterization of histatin 1 salivary complexes by using mass spectrometry.

    abstract::With recent progress in the analysis of the salivary proteome, the number of salivary proteins identified has increased dramatically. However, the physiological functions of many of the newly discovered proteins remain unclear. Closely related to the study of a protein's function is the identification of its interacti...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201100665

    authors: Siqueira WL,Lee YH,Xiao Y,Held K,Wong W

    更新日期:2012-11-01 00:00:00

  • An innovative standard for LC-MS-based HCP-profiling and accurate quantity assessment: Application to batch consistency in viral vaccine samples.

    abstract::Biotherapeutics, molecules produced from biological systems, require rigorous purification steps to remove impurities including host cell proteins (HCPs). Regulatory guidelines require manufacturers to monitor process-related impurities along the purification workflow. Mass spectrometry (MS) has recently been consider...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.202000152

    authors: Trauchessec M,Hesse AM,Kraut A,Berard Y,Herment L,Fortin T,Bruley C,Ferro M,Manin C

    更新日期:2021-01-18 00:00:00

  • Analysis of human blood serum using the off-line coupling of capillary isoelectric focusing to matrix-assisted laser desorption/ionization time of flight mass spectrometry.

    abstract::Off-line coupling of capillary IEF (CIEF) with matrix-assisted laser desorption/ionization mass spectrometry was utilized for the analysis of human blood serum. Serum proteins were initially separated by CIEF, and fractions of the isoelectric separation were eluted sequentially to a MALDI-TOF MS sample target. During ...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401212

    authors: Crowley TA,Hayes MA

    更新日期:2005-09-01 00:00:00

  • Proteomic profiling for cancer progression: Differential display analysis for the expression of intracellular proteins between regressive and progressive cancer cell lines.

    abstract::Tumor development and progression consist of a series of complex processes involving multiple changes in gene expression (Paolo et al. Physiol. Rev., 1993, 73, 161-195; Lance et al. Cell., 1991, 64, 327-336). Tumor cells acquire an invasive and metastatic phenotype that is the main cause of death for cancer patients. ...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401132

    authors: Hayashi E,Kuramitsu Y,Okada F,Fujimoto M,Zhang X,Kobayashi M,Iizuka N,Ueyama Y,Nakamura K

    更新日期:2005-03-01 00:00:00

  • Free-flow electrophoresis in proteome sample preparation.

    abstract::An aim of proteome research is to identify the entire complement of proteins expressed in defined cell types of humans, animals, plants, and microorganisms. The approach requires searching for low abundant or even rarely expressed proteins in many cell types, as well as the determination of the protein expression leve...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.201300253

    authors: Wildgruber R,Weber G,Wise P,Grimm D,Bauer J

    更新日期:2014-03-01 00:00:00

  • Approaches for the quantification of protein concentration ratios.

    abstract::The function of a protein is modulated by its abundance and its degree of specific post-translational modifications such as phosphorylation, glycosylation or truncation. Consequently, changes of protein concentration and the extent of their post-translational modifications has a great influence on the activity of intr...

    journal_title:Proteomics

    pub_type: 杂志文章,评审

    doi:10.1002/pmic.200300581

    authors: Moritz B,Meyer HE

    更新日期:2003-11-01 00:00:00

  • Proteome analysis of proliferative response of bystander cells adjacent to cells exposed to ionizing radiation.

    abstract::Recently (Cytometry 2003, 56A, 71-80), we reported that direct cell-to-cell contact is required for stimulating proliferation of bystander rat liver cells (WB-F344) cocultured with irradiated cells, and neither functional gap junction intercellular communication nor long-range extracellular factors appear to be involv...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200600948

    authors: Gerashchenko BI,Yamagata A,Oofusa K,Yoshizato K,de Toledo SM,Howell RW

    更新日期:2007-06-01 00:00:00

  • The Equine PeptideAtlas: a resource for developing proteomics-based veterinary research.

    abstract::Progress in MS-based methods for veterinary research and diagnostics is lagging behind compared to the human research, and proteome data of domestic animals is still not well represented in open source data repositories. This is particularly true for the equine species. Here we present a first Equine PeptideAtlas enco...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201300398

    authors: Bundgaard L,Jacobsen S,Sørensen MA,Sun Z,Deutsch EW,Moritz RL,Bendixen E

    更新日期:2014-03-01 00:00:00

  • CFP10 discriminates between nonacetylated and acetylated ESAT-6 of Mycobacterium tuberculosis by differential interaction.

    abstract::ESAT-6 (the 6 kDa early secreted antigenic target) protein species in short-term culture filtrate of Mycobacterium tuberculosis were separated in a 4-5 narrow range pI gradient two-dimensional gel electrophoresis (2-DE). Eight ESAT-6 protein species were analyzed in detail by peptide mass fingerprinting matrix-assiste...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200400906

    authors: Okkels LM,Müller EC,Schmid M,Rosenkrands I,Kaufmann SH,Andersen P,Jungblut PR

    更新日期:2004-10-01 00:00:00

  • Use of two-dimensional gel electrophoresis proteome reference maps of dinoflagellates for species recognition of causative agents of harmful algal blooms.

    abstract::The sample preparation procedures established for Prorocentrum triestinum were adapted to cover both thecate and athecate dinoflagellates. Further, whether trichloroacetic acid (TCA) precipitation can be used to fix and preserve the harmful or nuisance species from local waters that they infest was tested. Optimized t...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200300548

    authors: Chan LL,Hodgkiss IJ,Lu S,Lo SC

    更新日期:2004-01-01 00:00:00

  • A strategy for the comparative analysis of serum proteomes for the discovery of biomarkers for hepatocellular carcinoma.

    abstract::Many of the emerging technologies for the global evaluation of gene expression, at both the RNA and protein level, are being applied to the problem of finding biomarkers for human disease progression. These analyses can be made difficult, however, by variation between samples that arises from both technical and nondis...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200300399

    authors: Steel LF,Shumpert D,Trotter M,Seeholzer SH,Evans AA,London WT,Dwek R,Block TM

    更新日期:2003-05-01 00:00:00

  • Simultaneous extraction of nucleic acids and proteins from tissue specimens by ultracentrifugation: A protocol using the high-salt protein fraction for quantitative proteome analysis.

    abstract::Comprehensive molecular profiling of human tumor tissue specimens at the DNA, mRNA and protein level is often obstructed by a limited amount of available material. Homogenization of frozen tissue samples in guanidine isothiocyanate followed by ultracentrifugation over cesium chloride allows the simultaneous extraction...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200800902

    authors: Grzendowski M,Riemenschneider MJ,Hawranke E,Stefanski A,Meyer HE,Reifenberger G,Stühler K

    更新日期:2009-11-01 00:00:00

  • The proteomics of senescence in leaves of white clover, Trifolium repens (L.).

    abstract::A proteomics approach has been used to study changes in protein abundance during leaf senescence in white clover. Changes in cell ultrastructure were also examined using transmission electron microscopy. The most obvious ultrastructural changes during senescence occurred in chloroplasts, with progressive loss of thyla...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/1615-9861(200209)2:9<1114::AID-PROT1114>3.

    authors: Wilson KA,McManus MT,Gordon ME,Jordan TW

    更新日期:2002-09-01 00:00:00

  • Quantitative iTRAQ proteome and comparative transcriptome analysis of elicitor-induced Norway spruce (Picea abies) cells reveals elements of calcium signaling in the early conifer defense response.

    abstract::Long-lived conifer trees depend on both constitutive and induced defenses for resistance against a myriad of potential pathogens and herbivores. In species of spruce (Picea spp.), several of the late events of pathogen-, insect-, or elicitor-induced defense responses have previously been characterized at the anatomica...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200800252

    authors: Lippert DN,Ralph SG,Phillips M,White R,Smith D,Hardie D,Gershenzon J,Ritland K,Borchers CH,Bohlmann J

    更新日期:2009-01-01 00:00:00

  • Proteomic analysis of Taenia solium metacestode excretion-secretion proteins.

    abstract::The metacestode larval stage of Taenia solium is the causal agent of a zoonotic disease called cysticercosis. The disease has an important impact on pork trade (due to porcine cysticercosis) and public health (due to human neurocysticercosis). In order to improve the current diagnostic tools and to get a better unders...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201100496

    authors: Victor B,Kanobana K,Gabriël S,Polman K,Deckers N,Dorny P,Deelder AM,Palmblad M

    更新日期:2012-06-01 00:00:00

  • Peroxisomal proteomics, a new tool for risk assessment of peroxisome proliferating pollutants in the marine environment.

    abstract::In an attempt to improve the detection of peroxisome proliferation as a biomarker in environmental pollution assessment, we have applied a novel approach based on peroxisomal proteomics. Peroxisomal proteins from digestive glands of mussels Mytilus galloprovincialis were analyzed using 2-DE and MS. We have generated a...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401243

    authors: Mi J,Orbea A,Syme N,Ahmed M,Cajaraville MP,Cristóbal S

    更新日期:2005-10-01 00:00:00

  • A targeted proteomic strategy for the measurement of oral cancer candidate biomarkers in human saliva.

    abstract::Head and neck cancers, including oral squamous cell carcinoma (OSCC), are the sixth most common malignancy in the world and are characterized by poor prognosis and a low survival rate. Saliva is oral fluid with intimate contact with OSCC. Besides non-invasive, simple, and rapid to collect, saliva is a potential source...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.201500224

    authors: Kawahara R,Bollinger JG,Rivera C,Ribeiro AC,Brandão TB,Paes Leme AF,MacCoss MJ

    更新日期:2016-01-01 00:00:00

  • CD28 stimulation regulates its association with N-ethylmaleimide-sensitive fusion protein and other proteins involved in vesicle sorting.

    abstract::CD28 delivers a co-stimulatory signal for T cell antigen receptor induced activation of T cells through a mechanism which remains mostly elusive to date. In order to try and gain insight into CD28 function, we therefore applied state-of-the-art mass spectrometric protein identification technology to the analysis of CD...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/1615-9861(200101)1:1<70::AID-PROT70>3.0.CO

    authors: Heller M,Watts JD,Aebersold R

    更新日期:2001-01-01 00:00:00

  • Proteomic analysis of the wing imaginal discs of Drosophila melanogaster.

    abstract::We have combined high-resolution two-dimensional (2-D) gel electrophoresis and mass spectrometry with the aim of identifying proteins represented in the 2-D gel database of the wing imaginal discs of Drosophila melanogaster. First, we obtained a high-resolution 2-D gel pattern of [35S]methionine + [35S]cysteine-labele...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200400923

    authors: Alonso J,Santarén JF

    更新日期:2005-02-01 00:00:00

  • Subproteomics: identification of plasma membrane proteins from the yeast Saccharomyces cerevisiae.

    abstract::As a consequence of their poor solubility during isoelectric focusing, integral membrane proteins are generally absent from two-dimensional gel proteome maps. In order to analyze the yeast plasma membrane proteome, a plasma membrane purification protocol was optimized in order to reduce contaminating membranes and cyt...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/1615-9861(200212)2:12<1706::AID-PROT1706>3

    authors: Navarre C,Degand H,Bennett KL,Crawford JS,Mørtz E,Boutry M

    更新日期:2002-12-01 00:00:00

  • Protein profile changes in the human breast cancer cell line MCF-7 in response to SEL1L gene induction.

    abstract::The ectopic expression of the gene SEL1L in the human breast carcinoma cell line MCF-7 resulted in a reduction of the aggressive behaviour of these cells in vitro. In addition, in vivo analysis on a series of primary breast carcinomas revealed an association between the SEL1L protein levels and the patient's overall s...

    journal_title:Proteomics

    pub_type: 杂志文章

    doi:10.1002/pmic.200401283

    authors: Bianchi L,Canton C,Bini L,Orlandi R,Ménard S,Armini A,Cattaneo M,Pallini V,Bernardi LR,Biunno I

    更新日期:2005-06-01 00:00:00