Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia.

Abstract:

:Rotaviral RNA was detected in the stool sample of an asymptomatic fattening pig at a Slovenian pig farm. To characterize the rotavirus, RT-PCR was used, employing primers specific for the VP7, VP4 and NSP4 genes. Specific products were purified and the sequencing reaction was performed for the molecular analysis of amplified genes. Nucleotide and amino acid sequences of the VP7 gene were found highly identical (85.3-88.1% and 90.7-91.6%) to G1 genotype strains. Phylogenetic and molecular analyses of the VP7 antigen regions revealed the sample to be from a new lineage of G1 genotype. In the molecular analysis of the VP4 gene, only 70.9% nucleotide (76.2% amino acid) identity was found with the most related rotavirus VP4 gene from GenBank. Following this, the NSP4 gene was also analyzed. After the phylogenetic analysis, it clustered with the NSP4 B genotype, but also seemed to represent a new lineage of this genotype. This new rotavirus strain, named P21-5, differed greatly from all rotaviruses characterized so far in all three genes analyzed. The virulence of this strain is not clear yet and has to be investigated.

journal_name

Virology

journal_title

Virology

authors

Steyer A,Poljsak-Prijatelj M,Barlic-Maganja D,Jamnikar U,Mijovski JZ,Marin J

doi

10.1016/j.virol.2006.10.001

subject

Has Abstract

pub_date

2007-03-15 00:00:00

pages

275-82

issue

2

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(06)00732-X

journal_volume

359

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • The minute virus of mice exploits different endocytic pathways for cellular uptake.

    abstract::The minute virus of mice, prototype strain (MVMp), is a non-enveloped, single-stranded DNA virus of the family Parvoviridae. Unlike other parvoviruses, the mechanism of cellular uptake of MVMp has not been studied in detail. We analyzed MVMp endocytosis in mouse LA9 fibroblasts and a tumor cell line derived from epith...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2015.02.054

    authors: Garcin PO,Panté N

    更新日期:2015-08-01 00:00:00

  • Regulation of p53 gene expression by a poxviral transcription factor.

    abstract::Identification of regulators of p53 expression is a crucial step in understanding the diverse functions of p53 and its role in cellular homeostasis and responsiveness to insult. Several viral proteins inactivate p53 as a modulator of cell cycle progression and apoptosis. Here, we report that a unique leporipoxviral tr...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0507

    authors: Wali A,Strayer DS

    更新日期:1996-10-01 00:00:00

  • Identification and functional characterization of the left origin of lytic replication of murine gammaherpesvirus 68.

    abstract::Murine gammaherpesvirus 68 (MHV-68) replicates robustly in cell culture, providing a model for studying viral genome replication during de novo infection of tumor-associated herpesviruses. We have previously identified a 1.25-kb origin of lytic replication (oriLyt) for MHV-68. To further investigate the molecular mech...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.02.029

    authors: Gong D,Qi J,Arumugaswami V,Sun R,Deng H

    更新日期:2009-05-10 00:00:00

  • Phosphorylation of Sindbis virus nsP3 in vivo and in vitro.

    abstract::nsP3 is one of four viral nonstructural proteins required for RNA replication of Sindbis virus. In this report, post-translational modifications of nsP3 which occur in both vertebrate and mosquito cell cultures have been examined. In pulse-chase experiments, analyzed by immunoprecipitation and sodium dodecyl sulfate-p...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90310-n

    authors: Li GP,La Starza MW,Hardy WR,Strauss JH,Rice CM

    更新日期:1990-11-01 00:00:00

  • The incorporation of reovirus cell attachment protein sigma 1 into virions requires the N-terminal hydrophobic tail and the adjacent heptad repeat region.

    abstract::The N-terminal portion of the reovirus cell attachment protein sigma 1 has recently been shown to possess intrinsic oligomerization and virion-anchoring functions. Sequence analysis of the sigma 1 proteins of the three reovirus serotypes has revealed the presence of distinct structural domains within this region: a te...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90678-5

    authors: Leone G,Mah DC,Lee PW

    更新日期:1991-05-01 00:00:00

  • Structural and functional analysis of the baculovirus single-stranded DNA-binding protein LEF-3.

    abstract::The single-stranded DNA-binding protein LEF-3 of Autographa californica multinucleocapsid nucleopolyhedrovirus consists of 385 amino acid residues, forms oligomers, and promotes Mg2+-independent unwinding of DNA duplexes and annealing of complementary DNA strands. Partial proteolysis revealed that the DNA-binding doma...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2005.11.027

    authors: Mikhailov VS,Okano K,Rohrmann GF

    更新日期:2006-03-15 00:00:00

  • The cowpox virus serpin SPI-3 complexes with and inhibits urokinase-type and tissue-type plasminogen activators and plasmin.

    abstract::The orthopoxvirus serpin SPI-3 is N-glycosylated and suppresses fusion between infected cells. Although SPI-3 contains motifs conserved in inhibitory serpins, no proteinase inhibition by SPI-3 has been demonstrated, and mutations within the serpin reactive center loop (RCL) do not affect the ability to regulate cell f...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2000.0377

    authors: Turner PC,Baquero MT,Yuan S,Thoennes SR,Moyer RW

    更新日期:2000-07-05 00:00:00

  • Analyses of prevalence and polymorphisms of six replication-competent and chromosomally assigned porcine endogenous retroviruses in individual pigs and pig subspecies.

    abstract::As porcine endogenous retroviruses (PERV) productively infect human cells in vitro, they pose a serious risk in xenotransplantation and xenogeneic cell therapies. We have analyzed the prevalence of six well-characterized full-length PERV, five of them being replication-competent and four of them being chromosomally as...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/s0042-6822(03)00316-7

    authors: Niebert M,Tönjes RR

    更新日期:2003-09-01 00:00:00

  • Efficient production of Hantaan and Puumala pseudovirions for viral tropism and neutralization studies.

    abstract::Puumala (PUUV) and Hantaan (HTNV) viruses are hantaviruses within the family Bunyaviridae and associated with Hemorrhagic Fever with Renal Syndrome (HFRS) in humans. Little is known about how these viruses interact with host cells, though pathogenic hantaviruses interact with α(v)β(3) integrin. To study host cell inte...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.08.012

    authors: Higa MM,Petersen J,Hooper J,Doms RW

    更新日期:2012-02-20 00:00:00

  • The E5 gene of HPV-16 enhances keratinocyte immortalization by full-length DNA.

    abstract::Human papillomavirus type 16 (HPV-16) is the most common papillomavirus genome found in human cervical cancers and its DNA is capable of immortalizing primary keratinocytes in vitro. When expressed by their native promoter, two separate HPV-16 oncogenes, E6 and E7, cooperate to immortalize primary human keratinocytes....

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0475

    authors: Stöppler MC,Straight SW,Tsao G,Schlegel R,McCance DJ

    更新日期:1996-09-01 00:00:00

  • Effects of sequences of prokaryotic origin on titer and transgene expression in retroviral vectors.

    abstract::Transcriptionally targeted MLV-based ProCon vectors allow expression of the transduced gene in a promoter-specific manner by replacement of the viral U3 region with a heterologous promoter. In order to evaluate the effects of sequence elements present in ProCon vectors on transgene expression (enhanced green fluoresce...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2004.09.012

    authors: Hlavaty J,Portsmouth D,Stracke A,Salmons B,Günzburg WH,Renner M

    更新日期:2004-12-05 00:00:00

  • Umbravirus-encoded proteins both stabilize heterologous viral RNA and mediate its systemic movement in some plant species.

    abstract::The proteins encoded by open reading frame 3 (ORF3) of the umbraviruses pea enation mosaic virus-2 and tobacco mottle virus, like that of groundnut rosette virus, mediated the movement of viral RNA through the phloem of infected Nicotiana benthamiana or N. clevelandii plants when they were expressed from chimeric toba...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2001.1078

    authors: Ryabov EV,Robinson DJ,Taliansky M

    更新日期:2001-09-30 00:00:00

  • Use of lysolecithin-permeabilized infected-cell extracts to investigate the in vitro biochemical phenotypes of poxvirus ts mutations altered in viral transcription activity.

    abstract::Lysolecithin permeabilization of vaccinia virus-infected cells was employed to prepare extracts that support faithful transcription initiation in vitro on plasmids possessing early, intermediate, and late viral gene promoters. Conditions which optimize transcription from each promoter were defined. The in vitro system...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0177

    authors: Condit RC,Lewis JI,Quinn M,Christen LM,Niles EG

    更新日期:1996-04-01 00:00:00

  • Virion stability and aphid vector transmissibility of Cucumber mosaic virus mutants.

    abstract::The physical stability of virions of Cucumber mosaic virus (CMV) mutants was investigated to determine if relative stability correlated with efficiency of aphid transmission. Virion stability was evaluated by a urea disruption assay and by testing the infectivity of virus following purifications. All viruses were infe...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2004.11.021

    authors: Ng JC,Josefsson C,Clark AJ,Franz AW,Perry KL

    更新日期:2005-02-05 00:00:00

  • The complete nucleotide sequence of a New World simian foamy virus.

    abstract::We determined the complete nucleotide sequence of the New World simian foamy virus (FV) from spider monkey (SFVspm). Starting from a conserved region in the integrase (IN) domain of the pol gene we cloned fragments of the genome up to the 5' end of the long terminal repeat (LTR) into plasmid vectors and elucidated the...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.07.018

    authors: Thümer L,Rethwilm A,Holmes EC,Bodem J

    更新日期:2007-12-05 00:00:00

  • The effect of elevated levels of herpes simplex virus alpha-gene products on the expression of model early and late genes in vivo.

    abstract::The rate of synthesis in vivo and the steady-state level of mRNA of four "model" herpes simplex virus type 1 (HSV-1) genes were measured as a function of high levels of alpha-gene products. The genes studied were ICP4 (alpha), deoxy-UTPase (beta), VP5 (beta gamma), and glycoprotein C (gC, gamma). Accumulation of high ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(87)90318-7

    authors: Zhang YF,Devi-Rao GB,Rice M,Sandri-Goldin RM,Wagner EK

    更新日期:1987-03-01 00:00:00

  • Characterization of Frog Virus 3 knockout mutants lacking putative virulence genes.

    abstract::To identify ranavirus virulence genes, we engineered Frog Virus 3 (FV3) knockout (KO) mutants defective for a putative viral caspase activation and recruitment domain-containing (CARD) protein (Δ64R-FV3) and a β-hydroxysteroid dehydrogenase homolog (Δ52L-FV3). Compared to wild type (WT) FV3, infection of Xenopus tadpo...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2015.07.011

    authors: Andino Fde J,Grayfer L,Chen G,Chinchar VG,Edholm ES,Robert J

    更新日期:2015-11-01 00:00:00

  • 3'-terminal nucleotide sequences important for the accumulation of cowpea mosaic virus M-RNA.

    abstract::The location of nucleotide sequences important in determining the extent of cowpea mosaic virus M-RNA accumulation in cowpea protoplasts has been analyzed by deletion mutagenesis of full-length cDNA clones from which infectious transcripts can be produced in vitro. The results suggest that cis-acting sequences which d...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1993.1175

    authors: Rohll JB,Holness CL,Lomonossoff GP,Maule AJ

    更新日期:1993-04-01 00:00:00

  • Neutralizing monoclonal antibodies to human immunodeficiency virus type 1 do not inhibit viral transcytosis through mucosal epithelial cells.

    abstract::HIV-1 transcytosis has been proposed as a potential mechanism allowing the virus to cross the epithelium during mucosal transmission. Epitopes of the HIV-1 envelope involved in this process have not been identified yet. Here, we assessed a large panel of HIV neutralizing antibodies recognizing well-characterized epito...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.09.006

    authors: Chomont N,Hocini H,Gody JC,Bouhlal H,Becquart P,Krief-Bouillet C,Kazatchkine M,Bélec L

    更新日期:2008-01-20 00:00:00

  • Influenza virus is not restricted by tetherin whereas influenza VLP production is restricted by tetherin.

    abstract::Tetherin (ST2/CD317) is a cellular protein that restricts the release from cells of some enveloped viruses including HIV-1. To examine if influenza virus is affected by tetherin, MDCK cells constitutively expressing human tetherin and control MDCK cells were infected with influenza virus. No difference was observed in...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.05.006

    authors: Watanabe R,Leser GP,Lamb RA

    更新日期:2011-08-15 00:00:00

  • In vitro characterization of late steps of RNA recombination in turnip crinkle virus.II. The role of the priming stem and flanking sequences.

    abstract::Turnip crinkle carmovirus (TCV) has a uniquely high recombination frequency and nonrandom cross-over site distribution among the recombining TCV-associated satellite RNAs. An in vitro system has been developed that includes a partially purified TCV replicase preparation (RdRp) and chimeric RNAs that resemble the putat...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9342

    authors: Nagy PD,Simon AE

    更新日期:1998-09-30 00:00:00

  • Complementation of enteric adenovirus type 40 for lytic growth in tissue culture by E1B 55K function of adenovirus types 5 and 12.

    abstract::The enteric adenovirus type 40 strain Dugan (Ad40) cannot be passaged in HeLa cells, but will grow in 293 cells, which express Ad5 E1 functions. To determine the reason for this limited host range, KB cell lines expressing Ad2 E1A, E1B, or E1A + E1B (L. E. Babiss, C. S. H. Young, P. B. Fisher, and H. S. Ginsberg, 1983...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90634-x

    authors: Mautner V,Mackay N,Steinthorsdottir V

    更新日期:1989-08-01 00:00:00

  • The tobamovirus capsid protein functions as a host-specific determinant of long-distance movement.

    abstract::The tobamoviruses, tobacco mosaic virus (TMV) and Odontoglossum ringspot virus (ORSV), differ in the range of plant species that each can systemically infect. Both viruses systemically infect Nicotiana benthamiana similarly, but differ in the ability to systemically infect tobacco (N. tabacum). ORSV is confined to the...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1993.1107

    authors: Hilf ME,Dawson WO

    更新日期:1993-03-01 00:00:00

  • Natural variants of human adenovirus type 3 provide evidence for relative genome stability across time and geographic space.

    abstract::Human adenovirus type 3 (HAdV-B3) has an apparently stable genome yet remains a major circulating and problematic respiratory pathogen. Comparisons of the prototype genome to genomes from three current field strains, including two isolated from epidemics, and a laboratory strain, yielded small-scale nucleotide variati...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.10.052

    authors: Mahadevan P,Seto J,Tibbetts C,Seto D

    更新日期:2010-02-05 00:00:00

  • ZikaBase: An integrated ZIKV- Human Interactome Map database.

    abstract::Re-emergence of ZIKV has caused infections in more than 1.5 million people. The molecular mechanism and pathogenesis of ZIKV is not well explored due to unavailability of adequate model and lack of publically accessible resources to provide information of ZIKV-Human protein interactome map till today. This study made ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2017.11.007

    authors: Gurumayum S,Brahma R,Naorem LD,Muthaiyan M,Gopal J,Venkatesan A

    更新日期:2018-01-15 00:00:00

  • Characterization of a nonhemagglutinating mutant of canine parvovirus.

    abstract::A nonhemagglutinating mutant of a 1978 isolate of canine parvovirus (CPV) was derived after repeated passages in the NLFK feline kidney cell line. The mutant CPV was antigenically indistinguishable from wild-type virus when tested with 82 monoclonal antibodies, and it replicated in cat and dog cell lines in culture. S...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(88)90255-3

    authors: Parrish CR,Burtonboy G,Carmichael LE

    更新日期:1988-03-01 00:00:00

  • The majority of simian immunodeficiency virus/mne circle junctions result from ligation of unintegrated viral DNA ends that are aberrant for integration.

    abstract::SIV/Mne circle junctions were amplified by the polymerase chain reaction (PCR) and cloned in a bacterial plasmid. Sequence analysis of clones isolated from 11 independent PCRs reveals that the start site for plus DNA synthesis is 5' ACTG. . ., and thus an asymmetric cleavage must occur during viral integration. In add...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1993.1329

    authors: Randolph CA,Champoux JJ

    更新日期:1993-06-01 00:00:00

  • JC virus T protein during productive infection in human fetal brain and kidney cells.

    abstract::We have examined the synthesis of the T protein of the human polyomavirus, JCV, during productive infection in primary cultures of human fetal glial and kidney cells. Immunoprecipitation of protein extracts from virus infected cells revealed that the JCV large T protein from both the prototype Mad and HEK adapted stra...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90418-6

    authors: Major EO,Traub RG

    更新日期:1986-01-15 00:00:00

  • A membrane-associated movement protein of Pelargonium flower break virus shows RNA-binding activity and contains a biologically relevant leucine zipper-like motif.

    abstract::Two small viral proteins (DGBp1 and DGBp2) have been proposed to act in a concerted manner to aid intra- and intercellular trafficking of carmoviruses though the distribution of functions and mode of action of each protein partner are not yet clear. Here we have confirmed the requirement of the DGBps of Pelargonium fl...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.03.001

    authors: Martínez-Turiño S,Hernández C

    更新日期:2011-05-10 00:00:00

  • Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol.

    abstract::Methods currently used for HIV-1 viral load measurements are very sensitive, but cannot distinguish between infectious and noninfectious particles. Here we describe the development of a novel, sensitive, and highly reproducible method that allows rapid isolation and quantification of infectious particles from patient ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2004.05.022

    authors: Rusert P,Fischer M,Joos B,Leemann C,Kuster H,Flepp M,Bonhoeffer S,Günthard HF,Trkola A

    更新日期:2004-08-15 00:00:00