No-nonsense functions for long noncoding RNAs.

Abstract:

:The mysterious secrets of long noncoding RNAs, often referred to as the Dark Matter of the genome, are gradually coming to light. Several recent papers dig deep to reveal surprisingly complex and diverse functions of these enigmatic molecules.

journal_name

Cell

journal_title

Cell

authors

Nagano T,Fraser P

doi

10.1016/j.cell.2011.03.014

subject

Has Abstract

pub_date

2011-04-15 00:00:00

pages

178-81

issue

2

eissn

0092-8674

issn

1097-4172

pii

S0092-8674(11)00291-1

journal_volume

145

pub_type

杂志文章,评审

相关文献

CELL文献大全
  • The Cytoplasmic DNA Sensor cGAS Promotes Mitotic Cell Death.

    abstract::Pathogenic and other cytoplasmic DNAs activate the cyclic GMP-AMP synthase (cGAS)-stimulator of interferon genes (STING) pathway to induce inflammation via transcriptional activation by IRF3 and nuclear factor κB (NF-κB), but the functional consequences of exposing cGAS to chromosomes upon mitotic nuclear envelope bre...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2019.05.035

    authors: Zierhut C,Yamaguchi N,Paredes M,Luo JD,Carroll T,Funabiki H

    更新日期:2019-07-11 00:00:00

  • Germ-cell loss extends C. elegans life span through regulation of DAF-16 by kri-1 and lipophilic-hormone signaling.

    abstract::In C. elegans, removing the germ cells extends life span by triggering the nuclear localization and activation of the DAF-16/FOXO transcription factor in the intestine. In this study, we identify and analyze genes required for germline removal to extend life span. We find that the reproductive system communicates with...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2006.01.039

    authors: Berman JR,Kenyon C

    更新日期:2006-03-10 00:00:00

  • Variant PRC1 complex-dependent H2A ubiquitylation drives PRC2 recruitment and polycomb domain formation.

    abstract::Chromatin modifying activities inherent to polycomb repressive complexes PRC1 and PRC2 play an essential role in gene regulation, cellular differentiation, and development. However, the mechanisms by which these complexes recognize their target sites and function together to form repressive chromatin domains remain po...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2014.05.004

    authors: Blackledge NP,Farcas AM,Kondo T,King HW,McGouran JF,Hanssen LLP,Ito S,Cooper S,Kondo K,Koseki Y,Ishikura T,Long HK,Sheahan TW,Brockdorff N,Kessler BM,Koseki H,Klose RJ

    更新日期:2014-06-05 00:00:00

  • Chaperone activity with a redox switch.

    abstract::Hsp33, a member of a newly discovered heat shock protein family, was found to be a very potent molecular chaperone. Hsp33 is distinguished from all other known molecular chaperones by its mode of functional regulation. Its activity is redox regulated. Hsp33 is a cytoplasmically localized protein with highly reactive c...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80547-4

    authors: Jakob U,Muse W,Eser M,Bardwell JC

    更新日期:1999-02-05 00:00:00

  • Decoupling the Functional Pleiotropy of Stem Cell Factor by Tuning c-Kit Signaling.

    abstract::Most secreted growth factors and cytokines are functionally pleiotropic because their receptors are expressed on diverse cell types. While important for normal mammalian physiology, pleiotropy limits the efficacy of cytokines and growth factors as therapeutics. Stem cell factor (SCF) is a growth factor that acts throu...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2017.02.011

    authors: Ho CCM,Chhabra A,Starkl P,Schnorr PJ,Wilmes S,Moraga I,Kwon HS,Gaudenzio N,Sibilano R,Wehrman TS,Gakovic M,Sockolosky JT,Tiffany MR,Ring AM,Piehler J,Weissman IL,Galli SJ,Shizuru JA,Garcia KC

    更新日期:2017-03-09 00:00:00

  • Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences.

    abstract::Acquisition of the intestinal microbiota begins at birth, and a stable microbial community develops from a succession of key organisms. Disruption of the microbiota during maturation by low-dose antibiotic exposure can alter host metabolism and adiposity. We now show that low-dose penicillin (LDP), delivered from birt...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2014.05.052

    authors: Cox LM,Yamanishi S,Sohn J,Alekseyenko AV,Leung JM,Cho I,Kim SG,Li H,Gao Z,Mahana D,Zárate Rodriguez JG,Rogers AB,Robine N,Loke P,Blaser MJ

    更新日期:2014-08-14 00:00:00

  • FoxOs in tumor suppression and stem cell maintenance.

    abstract::The FoxO transcription factors have been implicated in many processes including tumor suppression and cell death. In this issue, two groups now report on mice that conditionally lack the three predominant FoxO transcription factors. Demonstrate that FoxOs are critical for the long-term maintenance of hematopoietic ste...

    journal_title:Cell

    pub_type: 评论,杂志文章,评审

    doi:10.1016/j.cell.2007.01.009

    authors: Arden KC

    更新日期:2007-01-26 00:00:00

  • The pie-1 and mex-1 genes and maternal control of blastomere identity in early C. elegans embryos.

    abstract::During C. elegans embryogenesis an 8-cell stage blastomere, called MS, undergoes a reproducible cleavage pattern, producing pharyngeal cells, body wall muscles, and cell deaths. We show here that maternal-effect mutations in the pie-1 and mex-1 genes cause additional 8-cell stage blastomeres to adopt a fate very simil...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(92)90542-k

    authors: Mello CC,Draper BW,Krause M,Weintraub H,Priess JR

    更新日期:1992-07-10 00:00:00

  • Myogenesis in primary cell cultures from Drosophila melanogaster: protein synthesis and actin heterogeneity during development.

    abstract::Muscle cell cultures from Drosophila melanogaster were obtained by plating dissociated gastrula stage embryo cells on protamine-treated culture dishes. They myogenic cells in these cultures fuse to form multinucleated pulsating cells by 15 hr after plating. An analysis of protein synthesis during myogenesis in these c...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(78)90210-6

    authors: Storti RV,Horovitch SJ,Scott MP,Rich A,Pardue ML

    更新日期:1978-04-01 00:00:00

  • Lighting up the stressed ER.

    abstract::Balancing the capacity for protein maturation with changes in protein flux through the endoplasmic reticulum (ER) is crucial for maintaining ER homeostasis. In this issue, Merksamer et al. (2008) exploit a redox-sensitive fluorescent protein to monitor the environment inside the ER of living yeast, illuminating how th...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2008.11.004

    authors: Kang SW,Hegde RS

    更新日期:2008-11-28 00:00:00

  • Chemical genetics: where genetics and pharmacology meet.

    abstract::Genetics and pharmacology can elicit surprisingly different phenotypes despite targeting the same protein. This Essay explores these unexpected differences and their implications for biology and medicine. ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2007.01.021

    authors: Knight ZA,Shokat KM

    更新日期:2007-02-09 00:00:00

  • Association of the origin recognition complex with heterochromatin and HP1 in higher eukaryotes.

    abstract::The origin recognition complex (ORC) is required to initiate eukaryotic DNA replication and also engages in transcriptional silencing in S. cerevisiae. We observed a striking preferential but not exclusive association of Drosophila ORC2 with heterochromatin on interphase and mitotic chromosomes. HP1, a heterochromatin...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80415-8

    authors: Pak DT,Pflumm M,Chesnokov I,Huang DW,Kellum R,Marr J,Romanowski P,Botchan MR

    更新日期:1997-10-31 00:00:00

  • mec-3, a homeobox-containing gene that specifies differentiation of the touch receptor neurons in C. elegans.

    abstract::The mec-3 gene is essential for proper differentiation of the set of six touch receptor neurons in C. elegans. In mutants lacking mec-3 activity, the touch receptors express none of their unique differentiated features and appear to be transformed into other types of neurons. We cloned the mec-3 gene by transposon tag...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(88)90174-2

    authors: Way JC,Chalfie M

    更新日期:1988-07-01 00:00:00

  • Exercise your amyloid.

    abstract::The interplay of genetics and the environment in the etiology of Alzheimer's disease (AD) is not well understood. Now, Lazarov and coworkers show that a simple paradigm of environmental enrichment alleviates amyloid burden and alters disease-associated gene expression changes in a double transgenic mouse model of AD. ...

    journal_title:Cell

    pub_type: 评论,杂志文章,评审

    doi:10.1016/j.cell.2005.02.027

    authors: Karsten SL,Geschwind DH

    更新日期:2005-03-11 00:00:00

  • RNA Sensing by Gut Piezo1 Is Essential for Systemic Serotonin Synthesis.

    abstract::Gastrointestinal enterochromaffin cells regulate bone and gut homeostasis via serotonin (5-hydroxytryptamine [5-HT]) production. A recent report suggested that gut microbes regulate 5-HT levels; however, the precise underlying molecular mechanisms are unexplored. Here, we reveal that the cation channel Piezo1 in the g...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2020.06.022

    authors: Sugisawa E,Takayama Y,Takemura N,Kondo T,Hatakeyama S,Kumagai Y,Sunagawa M,Tominaga M,Maruyama K

    更新日期:2020-08-06 00:00:00

  • Mad-Max transcriptional repression is mediated by ternary complex formation with mammalian homologs of yeast repressor Sin3.

    abstract::The bHLH-ZIP protein Mad heterodimerizes with Max as a sequence-specific transcriptional repressor. Mad is rapidly induced upon differentiation, and the associated switch from Myc-Max to Mad-Max heterocomplexes seem to repress genes normally activated by Myc-Max. We have identified two related mammalian cDNAs that enc...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(95)90355-0

    authors: Ayer DE,Lawrence QA,Eisenman RN

    更新日期:1995-03-10 00:00:00

  • Backbone mutations in transmembrane domains of a ligand-gated ion channel: implications for the mechanism of gating.

    abstract::An approach to identify backbone conformational changes underlying nicotinic acetylcholine receptor (nAChR) gating was developed. Specific backbone peptide bonds were replaced with an ester, which disrupts backbone hydrogen bonds at the site of mutation. At a conserved proline residue (alphaPro221) in the first transm...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80962-9

    authors: England PM,Zhang Y,Dougherty DA,Lester HA

    更新日期:1999-01-08 00:00:00

  • Inducible NOS inhibition reverses tobacco-smoke-induced emphysema and pulmonary hypertension in mice.

    abstract::Chronic obstructive pulmonary disease (COPD) is one of the most common causes of death worldwide. We report in an emphysema model of mice chronically exposed to tobacco smoke that pulmonary vascular dysfunction, vascular remodeling, and pulmonary hypertension (PH) precede development of alveolar destruction. We provid...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2011.08.035

    authors: Seimetz M,Parajuli N,Pichl A,Veit F,Kwapiszewska G,Weisel FC,Milger K,Egemnazarov B,Turowska A,Fuchs B,Nikam S,Roth M,Sydykov A,Medebach T,Klepetko W,Jaksch P,Dumitrascu R,Garn H,Voswinckel R,Kostin S,Seeger W,S

    更新日期:2011-10-14 00:00:00

  • Changes in calmodulin and its mRNA accompany reentry of quiescent (G0) cells into the cell cycle.

    abstract::Release of CHO-K1 cells from plateau or stationary phase and reentry into the cell cycle is specifically and reversibly blocked at two distinct sites by the anticalmodulin drug W13. The first block occurs early during release while the cells are still at G0/G1, whereas the second occurs later in reentry during early S...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(84)90075-8

    authors: Chafouleas JG,Lagacé L,Bolton WE,Boyd AE 3rd,Means AR

    更新日期:1984-01-01 00:00:00

  • An in vitro assay for Saccharomyces telomerase requires EST1.

    abstract::Telomerase activity was demonstrated in cell-free extracts from S. cerevisiae through the use of a PCR-based assay. As expected, this activity was eliminated by RNase or phenol treatment of the extract and was dependent on dGTP and dTTP. Telomerase was not detected in extracts prepared from cells grown for approximate...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(05)80017-0

    authors: Lin JJ,Zakian VA

    更新日期:1995-06-30 00:00:00

  • Transposons in place of telomeric repeats at a Drosophila telomere.

    abstract::We present the first isolation of the terminal DNA of an intact Drosophila telomere. It differs from those isolated from other eukaryotes by the lack of short tandem repeats at the terminus. The terminal 14.5 kb is composed of four tandem elements derived from two families of non-long terminal repeat retrotransposons ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(93)90318-k

    authors: Levis RW,Ganesan R,Houtchens K,Tolar LA,Sheen FM

    更新日期:1993-12-17 00:00:00

  • Polo delivers a PICH to the kinetochore.

    abstract::In this issue, Baumann et al. (2007) identify a helicase PICH that localizes to "threads" that remain connected between sister kinetochores after they have separated in anaphase. These threads are thought to be catenated centromeric DNA. PICH contributes to the mitotic checkpoint by recruiting Mad2 to kinetochores and...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2006.12.022

    authors: Yen TJ

    更新日期:2007-01-12 00:00:00

  • High level expression of the Activator transposase gene inhibits the excision of Dissociation in tobacco cotyledons.

    abstract::A fusion of the strong cauliflower mosaic virus 35S promoter to the Activator (Ac) transposase (TPASE) gene does not trigger excision of Dissociation (Ds) continuously during tobacco cotyledon development, although once activated, the 35S promoter remains active throughout embryogeny. Epistasis studies where 35S:TPASE...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(93)90385-4

    authors: Scofield SR,English JJ,Jones JD

    更新日期:1993-11-05 00:00:00

  • SRV2, a gene required for RAS activation of adenylate cyclase in yeast.

    abstract::We have identified a gene, SRV2, mutations of which alleviate stress sensitivity in strains carrying an activated RAS gene. Epistasis analysis suggests that the gene affects accumulation of cAMP in the cell. Direct assays of cAMP accumulation indicate that mutations of the gene diminish the rate of in vivo production ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(90)90813-t

    authors: Fedor-Chaiken M,Deschenes RJ,Broach JR

    更新日期:1990-04-20 00:00:00

  • Pdd1p, a novel chromodomain-containing protein, links heterochromatin assembly and DNA elimination in Tetrahymena.

    abstract::During Tetrahymena conjugation, programmed DNA degradation occurs in two separate nuclei. Thousands of germline-specific deletion elements are removed from the genome of the developing somatic macronucleus, and the old parental macronucleus is degraded by an apoptotic mechanism. An abundant polypeptide, Pdd1p (formerl...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)81324-0

    authors: Madireddi MT,Coyne RS,Smothers JF,Mickey KM,Yao MC,Allis CD

    更新日期:1996-10-04 00:00:00

  • Making sense of transcription networks.

    abstract::When transcription regulatory networks are compared among distantly related eukaryotes, a number of striking similarities are observed: a larger-than-expected number of genes, extensive overlapping connections, and an apparently high degree of functional redundancy. It is often assumed that the complexity of these net...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/j.cell.2015.04.014

    authors: Sorrells TR,Johnson AD

    更新日期:2015-05-07 00:00:00

  • MITRAC links mitochondrial protein translocation to respiratory-chain assembly and translational regulation.

    abstract::Mitochondrial respiratory-chain complexes assemble from subunits of dual genetic origin assisted by specialized assembly factors. Whereas core subunits are translated on mitochondrial ribosomes, others are imported after cytosolic translation. How imported subunits are ushered to assembly intermediates containing mito...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2012.11.053

    authors: Mick DU,Dennerlein S,Wiese H,Reinhold R,Pacheu-Grau D,Lorenzi I,Sasarman F,Weraarpachai W,Shoubridge EA,Warscheid B,Rehling P

    更新日期:2012-12-21 00:00:00

  • In trypanosomes the homolog of the largest subunit of RNA polymerase II is encoded by two genes and has a highly unusual C-terminal domain structure.

    abstract::We have isolated the genes encoding the largest subunit of all three classes of RNA polymerase from Trypanosoma brucei. While the pol II largest subunit is encoded by a single gene in all organisms examined to date, trypanosomes contain two copies of the gene. Both genes are expressed in the procyclic and bloodstream ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(89)90686-7

    authors: Smith JL,Levin JR,Ingles CJ,Agabian N

    更新日期:1989-03-10 00:00:00

  • Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

    abstract::Post-translational modifications of histone proteins and exchanges of histone variants of chromatin are central to the regulation of nearly all DNA-templated biological processes. However, the degree and variability of chromatin modifications in specific human immune cells remain largely unknown. Here, we employ a hig...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2018.03.079

    authors: Cheung P,Vallania F,Warsinske HC,Donato M,Schaffert S,Chang SE,Dvorak M,Dekker CL,Davis MM,Utz PJ,Khatri P,Kuo AJ

    更新日期:2018-05-31 00:00:00

  • Inactivation of CDK12 Delineates a Distinct Immunogenic Class of Advanced Prostate Cancer.

    abstract::Using integrative genomic analysis of 360 metastatic castration-resistant prostate cancer (mCRPC) samples, we identified a novel subtype of prostate cancer typified by biallelic loss of CDK12 that is mutually exclusive with tumors driven by DNA repair deficiency, ETS fusions, and SPOP mutations. CDK12 loss is enriched...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2018.04.034

    authors: Wu YM,Cieślik M,Lonigro RJ,Vats P,Reimers MA,Cao X,Ning Y,Wang L,Kunju LP,de Sarkar N,Heath EI,Chou J,Feng FY,Nelson PS,de Bono JS,Zou W,Montgomery B,Alva A,PCF\/SU2C International Prostate Cancer Dream Team.,Robins

    更新日期:2018-06-14 00:00:00