Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

Abstract:

:Post-translational modifications of histone proteins and exchanges of histone variants of chromatin are central to the regulation of nearly all DNA-templated biological processes. However, the degree and variability of chromatin modifications in specific human immune cells remain largely unknown. Here, we employ a highly multiplexed mass cytometry analysis to profile the global levels of a broad array of chromatin modifications in primary human immune cells at the single-cell level. Our data reveal markedly different cell-type- and hematopoietic-lineage-specific chromatin modification patterns. Differential analysis between younger and older adults shows that aging is associated with increased heterogeneity between individuals and elevated cell-to-cell variability in chromatin modifications. Analysis of a twin cohort unveils heritability of chromatin modifications and demonstrates that aging-related chromatin alterations are predominantly driven by non-heritable influences. Together, we present a powerful platform for chromatin and immunology research. Our discoveries highlight the profound impacts of aging on chromatin modifications.

journal_name

Cell

journal_title

Cell

authors

Cheung P,Vallania F,Warsinske HC,Donato M,Schaffert S,Chang SE,Dvorak M,Dekker CL,Davis MM,Utz PJ,Khatri P,Kuo AJ

doi

10.1016/j.cell.2018.03.079

subject

Has Abstract

pub_date

2018-05-31 00:00:00

pages

1385-1397.e14

issue

6

eissn

0092-8674

issn

1097-4172

pii

S0092-8674(18)30451-3

journal_volume

173

pub_type

杂志文章

相关文献

CELL文献大全
  • Lysosomal proteolysis and autophagy require presenilin 1 and are disrupted by Alzheimer-related PS1 mutations.

    abstract::Macroautophagy is a lysosomal degradative pathway essential for neuron survival. Here, we show that macroautophagy requires the Alzheimer's disease (AD)-related protein presenilin-1 (PS1). In PS1 null blastocysts, neurons from mice hypomorphic for PS1 or conditionally depleted of PS1, substrate proteolysis and autopha...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2010.05.008

    authors: Lee JH,Yu WH,Kumar A,Lee S,Mohan PS,Peterhoff CM,Wolfe DM,Martinez-Vicente M,Massey AC,Sovak G,Uchiyama Y,Westaway D,Cuervo AM,Nixon RA

    更新日期:2010-06-25 00:00:00

  • Tempering temperature changes for robust development.

    abstract::Developmental signaling pathways needed to evolve to be robust against environmental fluctuations. In this issue, Shimizu et al. reveal a complex system of interacting endocytic pathways that help to maintain consistent levels of Notch activity across a range of temperatures. ...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2014.05.007

    authors: Delidakis C

    更新日期:2014-05-22 00:00:00

  • Neuropilin-1 is expressed by endothelial and tumor cells as an isoform-specific receptor for vascular endothelial growth factor.

    abstract::Vascular endothelial growth factor (VEGF), a major regulator of angiogenesis, binds to two receptor tyrosine kinases, KDR/Flk-1 and Flt-1. We now describe the purification and the expression cloning from tumor cells of a third VEGF receptor, one that binds VEGF165 but not VEGF121. This isoform-specific VEGF receptor (...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)81402-6

    authors: Soker S,Takashima S,Miao HQ,Neufeld G,Klagsbrun M

    更新日期:1998-03-20 00:00:00

  • Mutations of immunoglobulin transmembrane and cytoplasmic domains: effects on intracellular signaling and antigen presentation.

    abstract::The membrane-bound form of immunoglobulin serves as an antigen-specific receptor for B cells mediating signal transduction and antigen presentation. We have developed an assay that reconstitutes both these physiologic responses with respect to the antigen phosphorylcholine. By introducing specific mutations in the hum...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(90)90171-a

    authors: Shaw AC,Mitchell RN,Weaver YK,Campos-Torres J,Abbas AK,Leder P

    更新日期:1990-10-19 00:00:00

  • Superantigen-induced immune stimulation amplifies mouse mammary tumor virus infection and allows virus transmission.

    abstract::Endogenous and infectious mouse mammary tumor viruses (MMTVs) encode in their 3' long terminal repeat a protein that exerts superantigen activity; that is, it is able to interact with T cells via the variable domain of the T cell receptor (TCR) beta chain. We show here that transmission of an infectious MMTV is preven...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(93)80054-i

    authors: Held W,Waanders GA,Shakhov AN,Scarpellino L,Acha-Orbea H,MacDonald HR

    更新日期:1993-08-13 00:00:00

  • HIF-1 regulates cytochrome oxidase subunits to optimize efficiency of respiration in hypoxic cells.

    abstract::O(2) is the ultimate electron acceptor for mitochondrial respiration, a process catalyzed by cytochrome c oxidase (COX). In yeast, COX subunit composition is regulated by COX5a and COX5b gene transcription in response to high and low O(2), respectively. Here we demonstrate that in mammalian cells, expression of the CO...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2007.01.047

    authors: Fukuda R,Zhang H,Kim JW,Shimoda L,Dang CV,Semenza GL

    更新日期:2007-04-06 00:00:00

  • A point mutation in the conserved hexanucleotide at a yeast 5' splice junction uncouples recognition, cleavage, and ligation.

    abstract::We have constructed an actin-HIS4 gene fusion, such that expression of HIS4 requires proper splicing of the actin intron. Using this chimeric gene in an in vivo screen for splicing mutations, we have isolated a G to A transition in the fifth position of the yeast 5' consensus sequence/GTAPyGT. This mutation still allo...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(85)90065-0

    authors: Parker R,Guthrie C

    更新日期:1985-05-01 00:00:00

  • A symmetrical six-base-pair target site sequence determines Tn10 insertion specificity.

    abstract::Transposon Tn10 inserts at many sites in the bacterial chromosome, but preferentially inserts at particular hotspots. We believe we have identified the target DNA signal responsible for this specificity. We have determined the DNA sequences of 11 Tn10 insertion sites and identified a particular 6 base pair (bp) symmet...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(82)90385-3

    authors: Halling SM,Kleckner N

    更新日期:1982-01-01 00:00:00

  • Critical role of amyloid-like oligomers of Drosophila Orb2 in the persistence of memory.

    abstract::A long-standing question in the study of long-term memory is how a memory trace persists for years when the proteins that initiated the process turn over and disappear within days. Previously, we postulated that self-sustaining amyloidogenic oligomers of cytoplasmic polyadenylation element-binding protein (CPEB) provi...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2012.01.004

    authors: Majumdar A,Cesario WC,White-Grindley E,Jiang H,Ren F,Khan MR,Li L,Choi EM,Kannan K,Guo F,Unruh J,Slaughter B,Si K

    更新日期:2012-02-03 00:00:00

  • Short telomeres, even in the presence of telomerase, limit tissue renewal capacity.

    abstract::Autosomal-dominant dyskeratosis congenita is associated with heterozygous mutations in telomerase. To examine the dosage effect of telomerase, we generated a line of mTR+/- mice on the CAST/EiJ background, which has short telomeres. Interbreeding of heterozygotes resulted in progressive telomere shortening, indicating...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2005.11.020

    authors: Hao LY,Armanios M,Strong MA,Karim B,Feldser DM,Huso D,Greider CW

    更新日期:2005-12-16 00:00:00

  • The herpes simplex virus amplicon: a new eucaryotic defective-virus cloning-amplifying vector.

    abstract::We have employed repeat units of herpes simplex virus (HSV) defective genomes to derive a cloning-amplifying vector (amplicon) that can replicate in eucaryotic cells in the presence of standard HSV helper virus. The design of the HSV amplicon system is based on the previous observation that cotransfection of cells wit...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(82)90035-6

    authors: Spaete RR,Frenkel N

    更新日期:1982-08-01 00:00:00

  • Pluripotent teratocarcinoma-thymus somatic cell hybrids.

    abstract::We have produced a series of somatic cell hybrids by fusing pluripotent PCC4aza1 embryonal carcinoma ("teretocarcinoma") cells with thymocytes from young adult mice. When these hybrids form tumors in nu/nu or syngeneic mice, all the tumors contain a range of differentiated tissues, as well as embryonal carcinoma-like ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(76)90051-9

    authors: Miller RA,Ruddle FH

    更新日期:1976-09-01 00:00:00

  • BACH1, a novel helicase-like protein, interacts directly with BRCA1 and contributes to its DNA repair function.

    abstract::BRCA1 interacts in vivo with a novel protein, BACH1, a member of the DEAH helicase family. BACH1 binds directly to the BRCT repeats of BRCA1. A BACH1 derivative, bearing a mutation in a residue that was essential for catalytic function in other helicases, interfered with normal double-strand break repair in a manner t...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(01)00304-x

    authors: Cantor SB,Bell DW,Ganesan S,Kass EM,Drapkin R,Grossman S,Wahrer DC,Sgroi DC,Lane WS,Haber DA,Livingston DM

    更新日期:2001-04-06 00:00:00

  • Lifted Up from Lockdown.

    abstract::The pandemic has impacted every scientist differently. Many negative impacts are frequently discussed. Here we highlight unexpected positives that we have found and hope will persist: improved access to experts; deeper and broader human engagement among colleagues, collaborators, and competitors; and significant democ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2020.09.027

    authors: Arturo EC,Saphire EO

    更新日期:2020-10-01 00:00:00

  • Site-specific recombination intermediates trapped with suicide substrates.

    abstract::A family of novel substrates was designed to enable the efficient accumulation of intermediates in site-specific recombination. Strategically placed nicks allow these "suicide substrates" to initiate the reaction but prevent its completion or reversal. Consequently, it has been possible to determine that lambda site-s...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(87)90336-9

    authors: Nunes-Düby SE,Matsumoto L,Landy A

    更新日期:1987-08-28 00:00:00

  • TGF-beta signaling specifies axons during brain development.

    abstract::In the mammalian brain, the specification of a single axon and multiple dendrites occurs early in the differentiation of most neuron types. Numerous intracellular signaling events for axon specification have been described in detail. However, the identity of the extracellular factor(s) that initiate neuronal polarity ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2010.06.010

    authors: Yi JJ,Barnes AP,Hand R,Polleux F,Ehlers MD

    更新日期:2010-07-09 00:00:00

  • Isolation and transformation of primary mesenchymal cells of the chick embryo.

    abstract::Pure primary mesenchymal cells from definitive streak stage chick embryos have been prepared free of epiblast and hypoblast cells. These cells have the potential in culture to differentiate into erythroid cells, beating heart muscle tissue, chondrocytes and epithelial cells. Transformation in vitro of pure primary mes...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(79)90320-9

    authors: Keane RW,Lindblad PC,Pierik LT,Ingram VM

    更新日期:1979-08-01 00:00:00

  • Sequence analysis and neuronal expression of fasciclin I in grasshopper and Drosophila.

    abstract::The fasciclin I, II, and III glycoproteins are expressed on different subsets of axon bundles (fascicles) in insect embryos and are thus candidates for surface recognition molecules involved in growth cone guidance. Here we present the sequence of grasshopper fasciclin I and the identification and sequence of the Dros...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(88)90574-0

    authors: Zinn K,McAllister L,Goodman CS

    更新日期:1988-05-20 00:00:00

  • Trans-acting nuclear protein responsible for induction of rearranged human immunoglobulin heavy chain gene.

    abstract::A complete human gamma 1 heavy chain gene (HIG1) was transferred into mouse cells by protoplast fusion. The HIG1 gene was strongly expressed in mouse myeloma cells but not in mouse fibroblasts (L cells). Nuclear extracts from myeloma cells were injected into L cell transformants containing one copy of the HIG1 gene; t...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(86)90534-9

    authors: Maeda H,Kitamura D,Kudo A,Araki K,Watanabe T

    更新日期:1986-04-11 00:00:00

  • Shedding "UV" light on endogenous opioid dependence.

    abstract::Excessive sun tanning can result in addictive behavior. In this issue of Cell, Fell et al. utilize a combination of behavioral pharmacology and transgenic mice to demonstrate that chronic UV light exposure recruits p53 signaling in keratinocytes, subsequently increasing β-endorphin signaling at opioid receptors, and p...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2014.06.009

    authors: Tejeda HA,Bonci A

    更新日期:2014-06-19 00:00:00

  • Antagonizing Wnt and FGF receptors: an enemy from within (the ER).

    abstract::In this issue of Cell, Yamamoto et al. (2005) describe a novel molecule, Shisa, which functions in the endoplastic reticulum (ER) to prevent maturation of Frizzled (Fz) serpentine receptors and fibroblast growth factor receptor (FGFR). Shisa thus antagonizes Wnt and FGF signaling cell-autonomously, thereby promoting a...

    journal_title:Cell

    pub_type: 评论,杂志文章

    doi:10.1016/j.cell.2005.01.006

    authors: He X

    更新日期:2005-01-28 00:00:00

  • Progesterone-induced meiosis in Xenopus laevis oocytes: a role for cAMP at the "maturation-promoting factor" level.

    abstract::Cholera toxin inhibition of progesterone-induced meiosis of Xenopus laevis oocytes in vitro has been correlated with increased cAMP levels. Inhibition of germinal vesicle breakdown (Gvbd) and cAMP increase occurred after a lag period of 2 hr, when cholera toxin was injected, or 4--5 hr, when applied externally. The ab...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(78)90052-1

    authors: Schorderet-Slatkine S,Schorderet M,Boquet P,Godeau F,Baulieu EE

    更新日期:1978-12-01 00:00:00

  • Strong voltage-dependent inward rectification of inward rectifier K+ channels is caused by intracellular spermine.

    abstract::Inward rectifier K+ channels mediate the K+ conductance at resting potential in many types of cell. Since these K+ channels do not pass outward currents (inward rectification) when the cell membrane is depolarized beyond a trigger threshold, they play an important role in controlling excitability. Both a highly voltag...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(95)90459-x

    authors: Fakler B,Brändle U,Glowatzki E,Weidemann S,Zenner HP,Ruppersberg JP

    更新日期:1995-01-13 00:00:00

  • Lipid-Sorting Specificity Encoded in K-Ras Membrane Anchor Regulates Signal Output.

    abstract::K-Ras is targeted to the plasma membrane by a C-terminal membrane anchor that comprises a farnesyl-cysteine-methyl-ester and a polybasic domain. We used quantitative spatial imaging and atomistic molecular dynamics simulations to examine molecular details of K-Ras plasma membrane binding. We found that the K-Ras ancho...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2016.11.059

    authors: Zhou Y,Prakash P,Liang H,Cho KJ,Gorfe AA,Hancock JF

    更新日期:2017-01-12 00:00:00

  • Doublecortin, a brain-specific gene mutated in human X-linked lissencephaly and double cortex syndrome, encodes a putative signaling protein.

    abstract::X-linked lissencephaly and "double cortex" are allelic human disorders mapping to Xq22.3-Xq23 associated with arrest of migrating cerebral cortical neurons. We identified a novel 10 kb brain-specific cDNA interrupted by a balanced translocation in an XLIS patient that encodes a novel 40 kDa predicted protein named Dou...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80899-5

    authors: Gleeson JG,Allen KM,Fox JW,Lamperti ED,Berkovic S,Scheffer I,Cooper EC,Dobyns WB,Minnerath SR,Ross ME,Walsh CA

    更新日期:1998-01-09 00:00:00

  • Monoclonal antibodies: use to detect developmentally regulated antigens on D. discoideum amebae.

    abstract::We have used monoclonal antibodies to detect developmentally regulated cell surface antigens on D. discoideum amebae. A study of an antigen detected using an antibody produced by a hybridoma line implicates a previously undescribed component in the process of cell aggregation. This antigen (consisting of a doublet of ...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(83)90295-7

    authors: Brodie C,Klein C,Swierkosz J

    更新日期:1983-04-01 00:00:00

  • Regulatory nascent peptides in the ribosomal tunnel.

    abstract::Accumulating evidence for nascent-peptide-mediated regulation of translation suggests that all nascent peptides do not necessarily interact with the ribosome in a similar manner. Recent studies have helped to elucidate the exit route of the nascent chain and its interactions with the ribosome. ...

    journal_title:Cell

    pub_type: 杂志文章,评审

    doi:10.1016/s0092-8674(02)00669-4

    authors: Tenson T,Ehrenberg M

    更新日期:2002-03-08 00:00:00

  • A major segment of the neurofibromatosis type 1 gene: cDNA sequence, genomic structure, and point mutations.

    abstract::Overlapping cDNA clones from the translocation breakpoint region (TBR) gene, recently discovered at the neurofibromatosis type 1 locus and found to be interrupted by deletions and a t(17;22) translocation, have been sequenced. A 4 kb sequence of the transcript of the TBR gene has been compared with sequences of genomi...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/0092-8674(90)90253-b

    authors: Cawthon RM,Weiss R,Xu GF,Viskochil D,Culver M,Stevens J,Robertson M,Dunn D,Gesteland R,O'Connell P

    更新日期:1990-07-13 00:00:00

  • Loss of a gp130 cardiac muscle cell survival pathway is a critical event in the onset of heart failure during biomechanical stress.

    abstract::Biomechanical stress is a major stimulus for cardiac hypertrophy and the transition to heart failure. By generating mice that harbor a ventricular restricted knockout of the gp130 cytokine receptor via Cre-IoxP-mediated recombination, we demonstrate a critical role for a gp130-dependent myocyte survival pathway in the...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/s0092-8674(00)80729-1

    authors: Hirota H,Chen J,Betz UA,Rajewsky K,Gu Y,Ross J Jr,Müller W,Chien KR

    更新日期:1999-04-16 00:00:00

  • Widespread Proteome Remodeling and Aggregation in Aging C. elegans.

    abstract::Aging has been associated with a progressive decline of proteostasis, but how this process affects proteome composition remains largely unexplored. Here, we profiled more than 5,000 proteins along the lifespan of the nematode C. elegans. We find that one-third of proteins change in abundance at least 2-fold during agi...

    journal_title:Cell

    pub_type: 杂志文章

    doi:10.1016/j.cell.2015.03.032

    authors: Walther DM,Kasturi P,Zheng M,Pinkert S,Vecchi G,Ciryam P,Morimoto RI,Dobson CM,Vendruscolo M,Mann M,Hartl FU

    更新日期:2015-05-07 00:00:00