Structural basis for distinct roles of SMAD2 and SMAD3 in FOXH1 pioneer-directed TGF-β signaling.

Abstract:

:TGF-β receptors phosphorylate SMAD2 and SMAD3 transcription factors, which then form heterotrimeric complexes with SMAD4 and cooperate with context-specific transcription factors to activate target genes. Here we provide biochemical and structural evidence showing that binding of SMAD2 to DNA depends on the conformation of the E3 insert, a structural element unique to SMAD2 and previously thought to render SMAD2 unable to bind DNA. Based on this finding, we further delineate TGF-β signal transduction by defining distinct roles for SMAD2 and SMAD3 with the forkhead pioneer factor FOXH1 as a partner in the regulation of differentiation genes in mouse mesendoderm precursors. FOXH1 is prebound to target sites in these loci and recruits SMAD3 independently of TGF-β signals, whereas SMAD2 remains predominantly cytoplasmic in the basal state and set to bind SMAD4 and join SMAD3:FOXH1 at target promoters in response to Nodal TGF-β signals. The results support a model in which signal-independent binding of SMAD3 and FOXH1 prime mesendoderm differentiation gene promoters for activation, and signal-driven SMAD2:SMAD4 binds to promoters that are preloaded with SMAD3:FOXH1 to activate transcription.

journal_name

Genes Dev

journal_title

Genes & development

authors

Aragón E,Wang Q,Zou Y,Morgani SM,Ruiz L,Kaczmarska Z,Su J,Torner C,Tian L,Hu J,Shu W,Agrawal S,Gomes T,Márquez JA,Hadjantonakis AK,Macias MJ,Massagué J

doi

10.1101/gad.330837.119

subject

Has Abstract

pub_date

2019-11-01 00:00:00

pages

1506-1524

issue

21-22

eissn

0890-9369

issn

1549-5477

pii

gad.330837.119

journal_volume

33

pub_type

杂志文章
  • Localization of RecA-like recombination proteins on chromosomes of the lily at various meiotic stages.

    abstract::The Rad51 and Lim15 proteins of lily, which are homologs of the bacterial RecA protein, were found on chromosomes in various stages of meiotic prophase 1. The presence of both Rad51 and Lim15 proteins as discrete foci on leptotene and zygotene chromosomes and their colocalization suggest that meiotic recombination beg...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.8.925

    authors: Terasawa M,Shinohara A,Hotta Y,Ogawa H,Ogawa T

    更新日期:1995-04-15 00:00:00

  • Smad3-dependent nuclear translocation of beta-catenin is required for TGF-beta1-induced proliferation of bone marrow-derived adult human mesenchymal stem cells.

    abstract::Adult mesenchymal stem cells (MSCs) derived from bone marrow contribute to the regeneration of multiple types of mesenchymal tissues. Here we describe the functional role of a novel form of cross-talk between the transforming growth factor beta1 (TGF-beta1) and Wnt signaling pathways in regulating the activities of hu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1388806

    authors: Jian H,Shen X,Liu I,Semenov M,He X,Wang XF

    更新日期:2006-03-15 00:00:00

  • Gene encoding a morphogenic protein required in the assembly of the outer coat of the Bacillus subtilis endospore.

    abstract::Endospores of Bacillus subtilis are encased in a two-layer protein shell known as the coat, which consists of a lammellar-like inner layer and an electron-dense outer layer. We report the cloning of the structural gene (designated cotE) for an alkali-soluble coat protein of 24 kD and show that the cotE gene product is...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2.8.1047

    authors: Zheng LB,Donovan WP,Fitz-James PC,Losick R

    更新日期:1988-08-01 00:00:00

  • Fibroblast growth factor signals regulate a wave of Hedgehog activation that is essential for coronary vascular development.

    abstract::Myocardial infarction and ischemic heart disease are the leading cause of death in the industrial world. Therapies employed for treating these diseases are aimed at promoting increased blood flow to cardiac tissue. Pharmacological induction of new coronary growth has recently been explored, however, clinical trials wi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1411406

    authors: Lavine KJ,White AC,Park C,Smith CS,Choi K,Long F,Hui CC,Ornitz DM

    更新日期:2006-06-15 00:00:00

  • Codon usage affects the structure and function of the Drosophila circadian clock protein PERIOD.

    abstract::Codon usage bias is a universal feature of all genomes, but its in vivo biological functions in animal systems are not clear. To investigate the in vivo role of codon usage in animals, we took advantage of the sensitivity and robustness of the Drosophila circadian system. By codon-optimizing parts of Drosophila period...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.281030.116

    authors: Fu J,Murphy KA,Zhou M,Li YH,Lam VH,Tabuloc CA,Chiu JC,Liu Y

    更新日期:2016-08-01 00:00:00

  • Smad proteins act in combination with synergistic and antagonistic regulators to target Dpp responses to the Drosophila mesoderm.

    abstract::Dorsal mesoderm induction in arthropods and ventral mesoderm induction in vertebrates are closely related processes that involve signals of the BMP family. In Drosophila, induction of visceral mesoderm, dorsal muscles, and the heart by Dpp is, at least in part, effected through the transcriptional activation and funct...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.15.2354

    authors: Xu X,Yin Z,Hudson JB,Ferguson EL,Frasch M

    更新日期:1998-08-01 00:00:00

  • A monocarboxylate transporter required for hepatocyte secretion of ketone bodies during fasting.

    abstract::To find new genes that influence liver lipid mass, we performed a genetic screen for zebrafish mutants with hepatic steatosis, a pathological accumulation of fat. The red moon (rmn) mutant develops hepatic steatosis as maternally deposited yolk is depleted. Conversely, hepatic steatosis is suppressed in rmn mutants by...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.180968.111

    authors: Hugo SE,Cruz-Garcia L,Karanth S,Anderson RM,Stainier DY,Schlegel A

    更新日期:2012-02-01 00:00:00

  • Role of the Escherichia coli RecQ DNA helicase in SOS signaling and genome stabilization at stalled replication forks.

    abstract::The RecQ protein family is a highly conserved group of DNA helicases that play roles in maintaining genomic stability. In this study, we present biochemical and genetic evidence that Escherichia coli RecQ processes stalled replication forks and participates in SOS signaling. Cells that carry dnaE486, a mutation in the...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1223804

    authors: Hishida T,Han YW,Shibata T,Kubota Y,Ishino Y,Iwasaki H,Shinagawa H

    更新日期:2004-08-01 00:00:00

  • canoe encodes a novel protein containing a GLGF/DHR motif and functions with Notch and scabrous in common developmental pathways in Drosophila.

    abstract::The canoemisty1 (cnomis1) mutation was isolated by virtue of its severe rough eye phenotype from approximately 500 fly lines, each harboring a single autosomal insertion of a P element (Bm delta w). Excision of the P element generated a lethal, null allele, cnomis10, together with many revertants with normal eye morph...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.5.612

    authors: Miyamoto H,Nihonmatsu I,Kondo S,Ueda R,Togashi S,Hirata K,Ikegami Y,Yamamoto D

    更新日期:1995-03-01 00:00:00

  • The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing.

    abstract::Piwi-piRNA (Piwi-interacting RNA) ribonucleoproteins (piRNPs) enforce retrotransposon silencing, a function critical for preserving the genome integrity of germ cells. The molecular functions of most of the factors that have been genetically implicated in primary piRNA biogenesis are still elusive. Here we show that M...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.254631.114

    authors: Vourekas A,Zheng K,Fu Q,Maragkakis M,Alexiou P,Ma J,Pillai RS,Mourelatos Z,Wang PJ

    更新日期:2015-03-15 00:00:00

  • Hematopoietic development of embryonic stem cells in vitro: cytokine and receptor gene expression.

    abstract::A novel system to study early hematopoietic development is described. This report documents the in vitro capacity of murine embryonic stem (ES) cells to differentiate into hematopoietic precursors of most, if not all, of the colony-forming cells found in normal bone marrow. This system is used to correlate the genetic...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.5.5.728

    authors: Schmitt RM,Bruyns E,Snodgrass HR

    更新日期:1991-05-01 00:00:00

  • Replication initiates at a confined region during DNA amplification in Sciara DNA puff II/9A.

    abstract::Two independent two-dimensional (2D) gel methods were used to map an origin of replication that is developmentally regulated by the steroid hormone ecdysone, namely an origin for DNA puff amplification in the fungus fly Sciara coprophila. Initiation of replication was found to occur within a small region of no larger ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.7.6.1072

    authors: Liang C,Spitzer JD,Smith HS,Gerbi SA

    更新日期:1993-06-01 00:00:00

  • Regulation of cell growth by Notch signaling and its differential requirement in normal vs. tumor-forming stem cells in Drosophila.

    abstract::Cancer stem cells (CSCs) are postulated to be a small subset of tumor cells with tumor-initiating ability that shares features with normal tissue-specific stem cells. The origin of CSCs and the mechanisms underlying their genesis are poorly understood, and it is uncertain whether it is possible to obliterate CSCs with...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.171959.111

    authors: Song Y,Lu B

    更新日期:2011-12-15 00:00:00

  • Exon coconversion biases accompanying intron homing: battle of the nucleases.

    abstract::Intron homing in phage T4 occurs in the context of recombination-dependent replication, by virtue of intron-encoded endonucleolytic activity. After the td intron endonuclease I-TevI cleaves the intronless recipient 23 and 25 nucleotides upstream of the intron insertion site, exonucleolytic degradation is required for ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.17.2158

    authors: Mueller JE,Smith D,Belfort M

    更新日期:1996-09-01 00:00:00

  • Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation.

    abstract::Histone post-translational modifications regulate chromatin structure and function largely through interactions with effector proteins that often contain multiple histone-binding domains. While significant progress has been made characterizing individual effector domains, the role of paired domains and how they functi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.220467.113

    authors: Rothbart SB,Dickson BM,Ong MS,Krajewski K,Houliston S,Kireev DB,Arrowsmith CH,Strahl BD

    更新日期:2013-06-01 00:00:00

  • SAM68 is required for regulation of Pumilio by the NORAD long noncoding RNA.

    abstract::The number of known long noncoding RNA (lncRNA) functions is rapidly growing, but how those functions are encoded in their sequence and structure remains poorly understood. NORAD (noncoding RNA activated by DNA damage) is a recently characterized, abundant, and highly conserved lncRNA that is required for proper mitot...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.309138.117

    authors: Tichon A,Perry RB,Stojic L,Ulitsky I

    更新日期:2018-01-01 00:00:00

  • Ablation of NF1 function in neurons induces abnormal development of cerebral cortex and reactive gliosis in the brain.

    abstract::Neurofibromatosis type 1 (NF1) is a prevalent genetic disorder that affects growth properties of neural-crest-derived cell populations. In addition, approximately one-half of NF1 patients exhibit learning disabilities. To characterize NF1 function both in vitro and in vivo, we circumvent the embryonic lethality of NF1...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.862101

    authors: Zhu Y,Romero MI,Ghosh P,Ye Z,Charnay P,Rushing EJ,Marth JD,Parada LF

    更新日期:2001-04-01 00:00:00

  • scratch, a pan-neural gene encoding a zinc finger protein related to snail, promotes neuronal development.

    abstract::The Drosophila scratch (scrt) gene is expressed in most or all neuronal precursor cells and encodes a predicted zinc finger transcription factor closely related to the product of the mesoderm determination gene snail (sna). Adult flies homozygous for scrt null alleles have a reduced number of photoreceptors in the eye...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.19.2384

    authors: Roark M,Sturtevant MA,Emery J,Vaessin H,Grell E,Bier E

    更新日期:1995-10-01 00:00:00

  • The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system.

    abstract::Interruption of translation in Escherichia coli can lead to the addition of an 11-residue carboxy-terminal peptide tail to the nascent chain. This modification is mediated by SsrA RNA (also called 10Sa RNA and tmRNA) and marks the tagged polypeptide for proteolysis. Degradation in vivo of lambda repressor amino-termin...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.9.1338

    authors: Gottesman S,Roche E,Zhou Y,Sauer RT

    更新日期:1998-05-01 00:00:00

  • H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.

    abstract::The histone variants H3.3 and H2A.Z have recently emerged as two of the most important features in transcriptional regulation, the molecular mechanism of which still remains poorly understood. In this study, we investigated the regulation of H3.3 and H2A.Z on chromatin dynamics during transcriptional activation. Our i...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.222174.113

    authors: Chen P,Zhao J,Wang Y,Wang M,Long H,Liang D,Huang L,Wen Z,Li W,Li X,Feng H,Zhao H,Zhu P,Li M,Wang QF,Li G

    更新日期:2013-10-01 00:00:00

  • A weak germ-line excision mutation blocks developmentally controlled amplification of the rDNA minichromosome of Tetrahymena thermophila.

    abstract::During development of the somatic macronucleus of Tetrahymena thermophila, the rDNA is excised from its germ-line chromosome, rearranged into a palindrome, and amplified to 10(4) copies. We have identified a cis-acting germ-line mutation, rmm11/6, that prevents amplification of the rDNA in all but approximately 1 in 1...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.8.1.84

    authors: Kapler GM,Blackburn EH

    更新日期:1994-01-01 00:00:00

  • Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB.

    abstract::The transcription factor TFIIB plays a central role in preinitiation complex assembly, providing a bridge between promoter-bound TFIID and RNA Polymerase II. TFIIB possesses sequence-specific DNA-binding ability and interacts with the TFIIB-recognition element (BRE), present in many promoters. Here we show that the BR...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.206901

    authors: Evans R,Fairley JA,Roberts SG

    更新日期:2001-11-15 00:00:00

  • The large N-terminal region of the Brr2 RNA helicase guides productive spliceosome activation.

    abstract::The Brr2 helicase provides the key remodeling activity for spliceosome catalytic activation, during which it disrupts the U4/U6 di-snRNP (small nuclear RNA protein), and its activity has to be tightly regulated. Brr2 exhibits an unusual architecture, including an ∼ 500-residue N-terminal region, whose functions and mo...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.271528.115

    authors: Absmeier E,Wollenhaupt J,Mozaffari-Jovin S,Becke C,Lee CT,Preussner M,Heyd F,Urlaub H,Lührmann R,Santos KF,Wahl MC

    更新日期:2015-12-15 00:00:00

  • mRNA 5'-leader trans-splicing in the chordates.

    abstract::We report the discovery of mRNA 5'-leader trans-splicing (SL trans-splicing) in the chordates. In the ascidian protochordate Ciona intestinalis, the mRNAs of at least seven genes undergo trans-splicing of a 16-nucleotide 5'-leader apparently derived from a 46-nucleotide RNA that shares features with previously charact...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.865401

    authors: Vandenberghe AE,Meedel TH,Hastings KE

    更新日期:2001-02-01 00:00:00

  • STAR RNA-binding protein Quaking suppresses cancer via stabilization of specific miRNA.

    abstract::Multidimensional cancer genome analysis and validation has defined Quaking (QKI), a member of the signal transduction and activation of RNA (STAR) family of RNA-binding proteins, as a novel glioblastoma multiforme (GBM) tumor suppressor. Here, we establish that p53 directly regulates QKI gene expression, and QKI prote...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.189001.112

    authors: Chen AJ,Paik JH,Zhang H,Shukla SA,Mortensen R,Hu J,Ying H,Hu B,Hurt J,Farny N,Dong C,Xiao Y,Wang YA,Silver PA,Chin L,Vasudevan S,Depinho RA

    更新日期:2012-07-01 00:00:00

  • A new regulatory protein, KSRP, mediates exon inclusion through an intronic splicing enhancer.

    abstract::We have purified and cloned a new splicing factor, KSRP. KSRP is a component of a multiprotein complex that binds specifically to an intronic splicing enhancer element downstream of the neuron-specific c-src N1 exon. This 75-kD protein induces the assembly of five other proteins, including the heterogeneous nuclear ri...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.8.1023

    authors: Min H,Turck CW,Nikolic JM,Black DL

    更新日期:1997-04-15 00:00:00

  • Heritable activity: a prion that propagates by covalent autoactivation.

    abstract::Known prions (infectious proteins) are self-propagating amyloids or conformationally altered proteins, but in theory an enzyme necessary for its own activation could also be a prion (or a gene composed of protein). We show that yeast protease B is such a prion, called [beta].[beta] is infectious, reversibly curable, a...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1115803

    authors: Roberts BT,Wickner RB

    更新日期:2003-09-01 00:00:00

  • So many pieces, one puzzle: cell type specification and visual circuitry in flies and mice.

    abstract::The visual system is a powerful model for probing the development, connectivity, and function of neural circuits. Two genetically tractable species, mice and flies, are together providing a great deal of understanding of these processes. Current efforts focus on integrating knowledge gained from three cross-fostering ...

    journal_title:Genes & development

    pub_type: 杂志文章,评审

    doi:10.1101/gad.248245.114

    authors: Wernet MF,Huberman AD,Desplan C

    更新日期:2014-12-01 00:00:00

  • Mutation of the AAUAAA polyadenylation signal depresses in vitro splicing of proximal but not distal introns.

    abstract::To investigate the relationship between splicing and polyadenylation during the production of vertebrate mRNAs, we examined the effect of mutation of a poly(A) site on splicing of upstream introns. Mutation of the AAUAAA polyadenylation consensus sequence inhibited in vitro splicing of an upstream intron. The magnitud...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.5.11.2086

    authors: Niwa M,Berget SM

    更新日期:1991-11-01 00:00:00

  • Role of the hypothalamic-pituitary-thyroid axis in metabolic regulation by JNK1.

    abstract::The cJun N-terminal kinase 1 (JNK1) is implicated in diet-induced obesity. Indeed, germline ablation of the murine Jnk1 gene prevents diet-induced obesity. Here we demonstrate that selective deficiency of JNK1 in the murine nervous system is sufficient to suppress diet-induced obesity. The failure to increase body mas...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1878510

    authors: Sabio G,Cavanagh-Kyros J,Barrett T,Jung DY,Ko HJ,Ong H,Morel C,Mora A,Reilly J,Kim JK,Davis RJ

    更新日期:2010-02-01 00:00:00