Insect genomes: progress and challenges.

Abstract:

:In the wake of constant improvements in sequencing technologies, numerous insect genomes have been sequenced. Currently, 1219 insect genome-sequencing projects have been registered with the National Center for Biotechnology Information, including 401 that have genome assemblies and 155 with an official gene set of annotated protein-coding genes. Comparative genomics analysis showed that the expansion or contraction of gene families was associated with well-studied physiological traits such as immune system, metabolic detoxification, parasitism and polyphagy in insects. Here, we summarize the progress of insect genome sequencing, with an emphasis on how this impacts research on pest control. We begin with a brief introduction to the basic concepts of genome assembly, annotation and metrics for evaluating the quality of draft assemblies. We then provide an overview of genome information for numerous insect species, highlighting examples from prominent model organisms, agricultural pests and disease vectors. We also introduce the major insect genome databases. The increasing availability of insect genomic resources is beneficial for developing alternative pest control methods. However, many opportunities remain for developing data-mining tools that make maximal use of the available insect genome resources. Although rapid progress has been achieved, many challenges remain in the field of insect genomics.

journal_name

Insect Mol Biol

journal_title

Insect molecular biology

authors

Li F,Zhao X,Li M,He K,Huang C,Zhou Y,Li Z,Walters JR

doi

10.1111/imb.12599

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

739-758

issue

6

eissn

0962-1075

issn

1365-2583

journal_volume

28

pub_type

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