Analysis of codon usage patterns in Morus notabilis based on genome and transcriptome data.

abstract：:Variation in recombinant frequencies at two adjacent intervals on chromosome 6 of tomato (Lycopersicon esculentum Mill.) has been studied in seven lines that differ in the amount and origin of introgressed segments from wild species. These lines were all crossed to a genotype homozygous recessive for the markers tl, y...

journal_title：Genome

authors： Liharska T,Wordragen M,Kammen A,Zabel P,Koornneef M

更新日期：1996-06-01 00:00:00

abstract：:A previous study of 100 karyotyped metaphase cells has demonstrated the utility of a graphic arts tool in deriving chromosome measurements for relative length determination. In the present study we utilize this same approach to address the question: "What are the average differences in relative lengths between apparen...

journal_title：Genome

authors： Mark HF,Wyandt HE,Pan T,Mark R Jr,Paramenter M,Campbell W,Mark Y

更新日期：1993-10-01 00:00:00

abstract：:We have used a PCR and cloning strategy to identify Ty1-copia-like retrotransposons in tomato, Lycopersicon esculentum Mill. Using degenerate oligonucleotide primers corresponding to conserved domains of the Ty1-copia retrotransposon reverse transcriptase (RT), fragments of about 260 bp were obtained by PCR amplificat...

journal_title：Genome

authors： Rogers SA,Pauls KP

更新日期：2000-10-01 00:00:00

abstract：:Microsatellites or SSRs (single sequence repeats) have been used to construct and integrate genetic maps in crop species, including Phaseolus vulgaris. In the present study, 3 cDNA libraries generated by the Bean EST project (http://lgm.esalq.usp.br/BEST/), comprising a unigene collection of 3126 sequences and a genom...

journal_title：Genome

authors： Hanai LR,de Campos T,Camargo LE,Benchimol LL,de Souza AP,Melotto M,Carbonell SA,Chioratto AF,Consoli L,Formighieri EF,Siqueira MV,Tsai SM,Vieira ML

更新日期：2007-03-01 00:00:00

abstract：:Barley yellow dwarf virus (BYDV) resistance in soft red winter wheat (SRWW) cultivars has been achieved by substituting a group 7 chromosome from Thinopyrum intermedium for chromosome 7D. To localize BYDV resistance, a detailed molecular genetic analysis was done on the alien group 7 Th. intermedium chromosome to dete...

journal_title：Genome

authors： Francki MG,Crasta OR,Sharma HC,Ohm HW,Anderson JM

更新日期：1997-10-01 00:00:00

abstract：:Chamaecyparis nootkatensis is an ecologically and economically important conifer of the north Pacific coastal forests. To aid in studies of clonal structure and genetic differentiation of this and related species, we isolated and characterized microsatellites from C. nootkatensis. A microsatellite-enriched library yie...

journal_title：Genome

authors： Bérubé Y,Ritland C,Ritland K

更新日期：2003-06-01 00:00:00

abstract：:Insulin-like growth factor 1 (IGF1) regulates growth and metabolic functions in vertebrates. A dinucleotide repeat sequence located at the promoter region of the IGF1 gene has been reported in several vertebrate species and may affect the control of the transcriptional activity of this gene. The genotypes of animals f...

journal_title：Genome

authors： Caetano AR,Bowling AT

更新日期：1998-02-01 00:00:00

abstract：:A high-density BAC filter of Triticum monococcum was screened for the presence of a centromeric retrotransposon using the integrase region as a probe. Southern hybridization to the BAC digests using total genomic DNA probes of Triticum monococcum, Triticum aestivum, and Hordeum vulgare detected differentially hybridiz...

journal_title：Genome

authors： Ito H,Nasuda S,Endo TR

更新日期：2004-08-01 00:00:00

abstract：:Despite the recent advances in plant population genetic studies, the lack of information regarding pedigree, ploidy level, or mode of inheritance for many polyploids can compromise the analysis of the molecular data produced. The aim of this study was to examine both microsatellite and cytogenetic characteristics of t...

journal_title：Genome

authors： Silvestrini M,Pinto-Maglio CA,Zucchi MI,dos Santos FA

更新日期：2013-12-01 00:00:00

abstract：:High-throughput sequencing (HTS) of DNA barcodes (metabarcoding), particularly when combined with standardized sampling protocols, is one of the most promising approaches for censusing overlooked cryptic invertebrate communities. We present biodiversity estimates based on sequencing of the cytochrome c oxidase subunit...

journal_title：Genome

authors： Al-Rshaidat MM,Snider A,Rosebraugh S,Devine AM,Devine TD,Plaisance L,Knowlton N,Leray M

更新日期：2016-09-01 00:00:00

abstract：:The evolution of karyotypically stabilized short-lived (SL) and long-lived (LL) cytoraces in the laboratory have been established and validated through our previous lifespan studies. In the present investigation, we examined the possible reason(s) for the differential longevity among selected members of SL and LL cyto...

journal_title：Genome

authors： Ranjini MS,Hosamani R,Muralidhara,Ramachandra NB

更新日期：2011-10-01 00:00:00

abstract：:Quantitative trait loci (QTL) controlling traits associated with winterhardiness in barley (field survival, LT50, growth habit, and crown fructan content) were mapped to chromosome 7 in a population of 100 F1-derived doubled haploid lines. The largest QTL effects for all traits were detected in a 21% recombination int...

journal_title：Genome

authors： Hayes PM,Blake T,Chen TH,Tragoonrung S,Chen F,Pan A,Liu B

更新日期：1993-02-01 00:00:00

abstract：:Using a complementary (c)DNA-amplified fragment length polymorphism (AFLP) approach, we investigated differential gene expression linked to resistance mechanisms during the incompatible potato - Globodera pallida interaction. Expression was compared between a resistant and a susceptible potato clone, inoculated or not...

journal_title：Genome

authors： Jolivet K,Grenier E,Bouchet JP,Esquibet M,Kerlan MC,Caromel B,Mugniéry D,Lefebvre V

更新日期：2007-04-01 00:00:00

abstract：:Selection of wheat germplasm for a range of quality traits has been a challenging exercise because of the cost of testing, the variation within testing data, and a poor understanding of the underlying genetics. The objective of this study was to identify quantitative trait loci (QTLs) underlying quality traits in whea...

journal_title：Genome

authors： Raman R,Allen H,Diffey S,Raman H,Martin P,McKelvie K

更新日期：2009-08-01 00:00:00

abstract：:Paenibacillus terrae NK3-4 is a plant growth-promoting rhizobacterium that may be useful for controlling plant diseases. We conducted a genomic analysis and identified the genes mediating antimicrobial functions. Additionally, an extracellular antifungal protein component was isolated and identified. The draft genome ...

journal_title：Genome

authors： Yu WQ,Zheng GP,Qiu W,Yan FC,Liu WZ,Liu WX

更新日期：2018-10-01 00:00:00

abstract：:Our goal was to purify and characterize the allelic variants H1b1 and H1b2 of histone H1.b, one of the seven subtypes of this linker histone extracted from Japanese quail erythrocyte nuclei. These variants are revealed phenotypically as band H1.3 or part of band H1.4 by polyacrylamide gel electrophoresis (PAGE) in sod...

journal_title：Genome

authors： Pałyga J,Neelin JM

更新日期：1998-10-01 00:00:00

abstract：:We have isolated and characterized microsatellites (simple sequence repeat (SSR) loci) from the silkworm genome. The screening of a partial genomic library by the conventional hybridization method led to the isolation of 28 microsatellites harbouring clones. The abundance of (CA)n repeats in the silkworm genome was ak...

journal_title：Genome

authors： Reddy KD,Abraham EG,Nagaraju J

更新日期：1999-12-01 00:00:00

abstract：:High soil boron (B) constitutes a major soil problem in many parts of the world, particularly in low-rainfall areas and land under irrigation. Low accumulation of B in the shoot or grain of cereal crops is correlated with the maintenance of biomass production and grain yield under high B conditions, suggesting that th...

journal_title：Genome

authors： Schnurbusch T,Langridge P,Sutton T

更新日期：2008-12-01 00:00:00

abstract：:Random amplified polymorphic DNA (RAPD) fingerprints of two shrimp populations (Litopenaeus stylirostris) were compared to find genetic marker(s) that may be associated with infectious hypodermal and hematopoietic necrosis virus (IHHNV) resistance or susceptibility. Of the 100 10-mer random primers and 100 intersimple...

journal_title：Genome

authors： Hizer SE,Dhar AK,Klimpel KR,Garcia DK

更新日期：2002-02-01 00:00:00

abstract：:The first SSR-based genetic linkage map of Cucurbita moschata was created by integrating the maps of two F2 populations with one common parent developed from the crosses Waltham Butternut (WB) x Nigerian Local (NL) and ZHOU (a hull-less type) x WB. The integrated C. moschata map comprises 205 SSR markers and two morph...

journal_title：Genome

authors： Gong L,Pachner M,Kalai K,Lelley T

更新日期：2008-11-01 00:00:00

abstract：:The genetic diversity of the genus Crotalaria is unknown even though many species in this genus are economically valuable. We report the first study in which polymorphic expressed sequence tag-simple sequence repeat (EST-SSR) markers derived from Medicago and soybean were used to assess the genetic diversity of the Cr...

journal_title：Genome

authors： Wang ML,Mosjidis JA,Morris JB,Dean RE,Jenkins TM,Pederson GA

更新日期：2006-06-01 00:00:00

abstract：:A mapping population of Paspalum simplex segregating for apomixis (asexual reproduction through seeds) was screened with AFLPs to find apomixis-linked markers. Four AFLPs linked to apomixis in coupling phase were found. Three of them did not show recombinants among the 87 individuals of the mapping population, whereas...

journal_title：Genome

authors： Labombarda P,Busti A,Caceres ME,Pupilli F,Arcioni S

更新日期：2002-06-01 00:00:00

abstract：:Marsupial mammals show extraordinary karyotype stability, with 2n = 14 considered ancestral. However, macropodid marsupials (kangaroos and wallabies) exhibit a considerable variety of karyotypes, with a hypothesised ancestral karyotype of 2n = 22. Speciation and karyotypic diversity in rock wallabies (Petrogale) is ex...

journal_title：Genome

authors： O'Neill RJ,Eldridge MD,Toder R,Ferguson-Smith MA,O'Brien PC,Graves JA

更新日期：1999-06-01 00:00:00

abstract：:Light-harvesting-like (LIL) proteins are low-molecular-mass membrane proteins related to the light-harvesting complexes, which form the dominant antenna system in most photosynthetic eukaryotes. To analyze the LIL protein family, we mined a number of publicly available databases to identify members of this family in a...

journal_title：Genome

authors： Neilson JA,Durnford DG

更新日期：2010-01-01 00:00:00

abstract：:Asarum sieboldii a well-known traditional Chinese medicinal herb, is used for curing inflammation and ache. It contains both bioactive ingredient asarinin and the toxic compound aristolochic acid. To address further breeding demand, genes involved in the biosynthetic pathways of asarinin and aristolochic acid should b...

journal_title：Genome

authors： Chen C,Shi X,Zhou T,Li W,Li S,Bai G

更新日期：2020-12-15 00:00:00

abstract：:Septoria speckled leaf blotch (SSLB), caused by Septoria passerinii, is one of the most important foliar diseases of barley (Hordeum vulgare L.) in North America. The primary problem caused by this disease is substantial yield loss. The objective of this study was to determine the chromosomal location of SSLB resistan...

journal_title：Genome

authors： Yu GT,Franckowiak JD,Lee SH,Horsley RD,Neate SM

更新日期：2010-08-01 00:00:00

abstract：:Environmental DNA (eDNA) is emerging as a potentially powerful tool for inferring species' presence, and hence occupancy, from DNA that is shed into environmental samples such as water. Although eDNA screening has been used to detect DNA from a variety of taxonomic groups, it has not yet been used to identify DNA from...

journal_title：Genome

authors： Cho A,Morris T,Wilson C,Freeland J

更新日期：2016-12-01 00:00:00

abstract：:As part of a project on lentil molecular genetics, the sequence of the 18S-25S ribosomal RNA gene intergenic spacer (IGS) of Lens culinaris Medik. was determined. DNA was cloned after polymerase chain reaction (PCR) amplification. The spacer of 2939 bp was composed of nonrepetitive sequences and four tandem arrays of ...

journal_title：Genome

authors： Fernández M,Polanco C,Ruiz ML,Pérez de la Vega M

更新日期：2000-08-01 00:00:00

abstract：:The genomic content of the subtelomeric repeated sequences Spelt1 and Spelt52 was studied by dot, Southern, and in situ hybridization in 11 newly synthesized amphiploids of Aegilops and Triticum, and data were compared with the parental plants. Spelt1 had reduced copy numbers in the first generation of three synthetic...

journal_title：Genome

authors： Salina EA,Numerova OM,Ozkan H,Feldman M

更新日期：2004-10-01 00:00:00

abstract：:Red clover is an important forage legume species for temperate regions and very little is known about the genetic organization of its breeding populations. We used random amplified polymorphic DNA (RAPD) genetic markers to address the genetic diversity and the distribution of variation in 20 breeding populations and c...

journal_title：Genome

authors： Ulloa O,Ortega F,Campos H

更新日期：2003-08-01 00:00:00