Evolutionary distribution of light-harvesting complex-like proteins in photosynthetic eukaryotes.

Abstract:

:Light-harvesting-like (LIL) proteins are low-molecular-mass membrane proteins related to the light-harvesting complexes, which form the dominant antenna system in most photosynthetic eukaryotes. To analyze the LIL protein family, we mined a number of publicly available databases to identify members of this family in a broad range of organisms. LIL proteins are diverse, having one to three predicted transmembrane helices. One- and two-helix LIL proteins were found in all the major photosynthetic eukaryote lineages (glaucophytes, red algae, and green algae) and are particularly well conserved in the green algae and land plants. In most cases, however, these proteins are not conserved between major lineages, and in some cases appear to have evolved independently. Three-helix LIL proteins are well conserved within the gymnosperms and angiosperms, but are much more divergent, and have been duplicated multiple times, in the green algae and bryophytes. We also identified a novel LIL protein in two Micromonas strains that contains a fourth hydrophobic region. This analysis identifies conserved members of the LIL protein family, signifying their importance to photosynthetic eukaryotes. It also indicates that classification of these proteins based on structural characteristics alone inadequately reflects the evolutionary history observed in this complex protein family.

journal_name

Genome

journal_title

Genome

authors

Neilson JA,Durnford DG

doi

10.1139/g09-081

subject

Has Abstract

pub_date

2010-01-01 00:00:00

pages

68-78

issue

1

eissn

0831-2796

issn

1480-3321

pii

g09-081

journal_volume

53

pub_type

杂志文章

相关文献

GENOME文献大全
  • First isolation and characterization of Brucella suis from yak.

    abstract::Brucella spp., facultative intracellular pathogens that can persistently colonize animal host cells and cause zoonosis, affect public health and safety. A Brucella strain was isolated from yak in Qinghai Province. To detect whether this isolate could cause an outbreak of brucellosis and to reveal its genetic character...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2019-0101

    authors: Yang X,Wang N,Cao X,Bie P,Xing Z,Yin S,Jiang H,Wu Q

    更新日期:2020-08-01 00:00:00

  • Differential susceptibility of a few members of the nasuta-albomicans complex of Drosophila to paraquat-induced lethality and oxidative stress.

    abstract::The evolution of karyotypically stabilized short-lived (SL) and long-lived (LL) cytoraces in the laboratory have been established and validated through our previous lifespan studies. In the present investigation, we examined the possible reason(s) for the differential longevity among selected members of SL and LL cyto...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-049

    authors: Ranjini MS,Hosamani R,Muralidhara,Ramachandra NB

    更新日期:2011-10-01 00:00:00

  • Assessment of the genetic diversity and phylogenetic relationships of a temperate bamboo collection by using transferred EST-SSR markers.

    abstract::Polymorphic expressed sequence tag - simple sequence repeat (EST-SSR) markers derived from major cereal crops were used to assess the genetic diversity of the USDA temperate bamboo collection consisting of 92 accessions classified in 11 separate genera and 44 species. A total of 211 bands were detected with a mean num...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-022

    authors: Barkley NA,Newman ML,Wang ML,Hotchkiss MW,Pederson GA

    更新日期:2005-08-01 00:00:00

  • Large-scale development of functional markers in Brassica species.

    abstract::Numerous quantitative trait loci (QTL) have been detected in Brassica species, but fine-mapping of major QTL has advanced slowly. The development of functional markers can overcome this barrier. We used publicly available PlantGDB-assembled unique transcripts (PUTs) from Brassica species to design 7836 functional simp...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-042

    authors: An Z,Gao C,Li J,Fu D,Tang Z,Ortegón O

    更新日期:2011-09-01 00:00:00

  • EST sequencing and gene expression profiling of cultivated peanut (Arachis hypogaea L.).

    abstract::Peanut (Arachis hypogaea L.) is one of the most important oil crops in the world. However, biotechnological based improvement of peanut is far behind many other crops. It is critical and urgent to establish the biotechnological platform for peanut germplasm innovation. In this study, a peanut seed cDNA library was con...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-074

    authors: Bi YP,Liu W,Xia H,Su L,Zhao CZ,Wan SB,Wang XJ

    更新日期:2010-10-01 00:00:00

  • Associated chromosomal DNA changes in polyploids.

    abstract::The 2C and 4C nuclear DNA amounts were estimated in eight diploid species, belonging to three diverse genera (Vicia, Tephrosia, and Phlox) and their corresponding colchitetraploids. In P. drummondii, T. purpurea, and T. oxygona tetraploids the deviation from the expectation was highly significant. The DNA in P. drummo...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g94-080

    authors: Raina SN,Parida A,Koul KK,Salimath SS,Bisht MS,Raja V,Khoshoo TN

    更新日期:1994-08-01 00:00:00

  • Can butterflies cope with city life? Butterfly diversity in a young megacity in southern China.

    abstract::During 30 years of unprecedented urbanization, plant diversity in Shenzhen, a young megacity in southern China, has increased dramatically. Although strongly associated with plant diversity, butterfly diversity generally declines with urbanization, but this has not been investigated in Shenzhen. Considering the speed ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2015-0192

    authors: Sing KW,Dong H,Wang WZ,Wilson JJ

    更新日期:2016-09-01 00:00:00

  • Development of species-specific primers with potential for amplifying eDNA from imperilled freshwater unionid mussels.

    abstract::Environmental DNA (eDNA) is emerging as a potentially powerful tool for inferring species' presence, and hence occupancy, from DNA that is shed into environmental samples such as water. Although eDNA screening has been used to detect DNA from a variety of taxonomic groups, it has not yet been used to identify DNA from...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2015-0196

    authors: Cho A,Morris T,Wilson C,Freeland J

    更新日期:2016-12-01 00:00:00

  • Analysis of 106 kb of contiguous DNA sequence from the D genome of wheat reveals high gene density and a complex arrangement of genes related to disease resistance.

    abstract::Vast differences exist in genome sizes of higher plants; however, gene count remains relatively constant among species. Differences observed in DNA content can be attributed to retroelement amplification leading to genome expansion. Cytological and genetic studies have demonstrated that genes are clustered in islands ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-049

    authors: Brooks SA,Huang L,Gill BS,Fellers JP

    更新日期:2002-10-01 00:00:00

  • Genomic in situ hybridization analysis of Thinopyrum chromatin in a wheat-Th. intermedium partial amphiploid and six derived chromosome addition lines

    abstract::The genomic origin of alien chromosomes present in a wheat-Thinopyrum intermedium partial amphiploid TAF46 (2n = 8x = 56) and six derived chromosome addition lines were analyzed by genomic in situ hybridization (GISH) using S genomic DNA from Pseudoroegneria strigosa (2n = 2x = 14, SS) as a probe. The GISH analysis cl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g99-090

    authors: Chen Q,Conner RL,Laroche A,Ji WQ,Armstrong KC,Fedak G

    更新日期:1999-12-01 00:00:00

  • Application of resistance gene analog markers to analyses of genetic structure and diversity in rice.

    abstract::Plant disease resistance gene analog (RGA) markers were designed according to the conserved sequence of known RGAs and used to map resistance genes. We used genome-wide RGA markers for genetic analyses of structure and diversity in a global rice germplasm collection. Of the 472 RGA markers, 138 were polymorphic and th...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2012-0142

    authors: Ren J,Yu Y,Gao F,Zeng L,Lu X,Wu X,Yan W,Ren G

    更新日期:2013-07-01 00:00:00

  • Mitochondrial genome analysis of the predatory mite Phytoseiulus persimilis and a revisit of the Metaseiulus occidentalis mitochondrial genome.

    abstract::In this study we sequenced and analysed the complete mitochondrial (mt) genome of the Chilean predatory mite Phytoseiulus persimilis Athias-Henriot (Chelicerata: Acari: Mesostigmata: Phytoseiidae: Amblyseiinae). The 16 199 bp genome (79.8% AT) contains the standard set of 13 protein-coding and 24 RNA genes. Compared w...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-004

    authors: Dermauw W,Vanholme B,Tirry L,Van Leeuwen T

    更新日期:2010-04-01 00:00:00

  • Potential of trispecies bridge crosses and random amplified polymorphic DNA markers for introgression of Medicago daghestanica and M. pironae germplasm into alfalfa (M. sativa).

    abstract::This report describes the production and cytology of the first interspecific hybrids between cultivated alfalfa (Medicago sativa L.) at the diploid level (2n = x = 16) and the diploid (2n = 2x = 16) perennial species M. daghestanica and M. pironae. An ovule-embryo culture technique was required to rescue hybrid embryo...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-080

    authors: McCoy TJ,Echt CS

    更新日期:1993-06-01 00:00:00

  • Construction of a garlic BAC library and chromosomal assignment of BAC clones using the FISH technique.

    abstract::For molecular and cytogenetic studies, two partial bacterial artificial chromosome (BAC) libraries of the garlic cultivar Allium sativum L. 'Danyang' were constructed using high molecular weight (HMW) garlic DNA, the pBAC1-SACB1 vector, and the pIndigoBAC536 vector. The average insert size of the BAC library was about...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-012

    authors: Lee HR,Eom EM,Lim YP,Bang JW,Lee DH

    更新日期:2003-06-01 00:00:00

  • Genetic map of the powdery mildew resistance gene in soybean PI 243540.

    abstract::Powdery mildew (caused by Microsphaera diffusa Cooke & Peck) is a common disease of soybean in many soybean-growing regions of the world and under greenhouse conditions. The previously reported Rmd locus of soybean for resistance to powdery mildew was mapped on soybean molecular linkage group J (chromosome 16). We hav...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-015

    authors: Kang ST,Mian MA

    更新日期:2010-05-01 00:00:00

  • Comparative cytogenetic study on Trifolium subterraneum (2n = 16) and Trifolium israeliticum (2n = 12).

    abstract::Changes in chromosome number have played an important role in the evolution of the genus Trifolium. Along with a few species of polyploid origin there are several cases of dysploidy as evidenced by the presence of four basic chromosome numbers (x = 8, 7, 6, 5). Trifolium subterraneum and Trifolium israeliticum are rel...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0055

    authors: Falistocco E,Marconi G,Falcinelli M

    更新日期:2013-06-01 00:00:00

  • Fluorescent in situ hybridization of a bacterial artificial chromosome.

    abstract::Fluorescent in situ hybridization (FISH) of a 130 kilobase cotton (Gossypium hirsuitum L.) bacterial artificial chromosome (BAC) clone containing a high proportion of single-copy DNA produced a large pair of FISH signals on the distal end of the long arm of a pair of chromosomes of the D-genome species G. raimondii Ul...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-082

    authors: Hanson RE,Zwick MS,Choi S,Islam-Faridi MN,McKnight TD,Wing RA,Price HJ,Stelly DM

    更新日期:1995-08-01 00:00:00

  • Phylogeny and expression of paralogous and orthologous sulphate transporter genes in diploid and hexaploid wheats.

    abstract::Twelve genes encoding two closely related subtypes (ST1.1a and ST1.1b) of a sulphate transporter have been identified in the diploid wheats Aegilops tauschii, Triticum urartu, and Aegilops speltoides, as well as the hexaploid Triticum aestivum. Based on phylogenetic comparisons with other plant sulphate transporters, ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-011

    authors: Buchner P,Prosser IM,Hawkesford MJ

    更新日期:2004-06-01 00:00:00

  • Cytogenetics and characterization of microsatellite loci for a South American pioneer tree species, Croton floribundus.

    abstract::Despite the recent advances in plant population genetic studies, the lack of information regarding pedigree, ploidy level, or mode of inheritance for many polyploids can compromise the analysis of the molecular data produced. The aim of this study was to examine both microsatellite and cytogenetic characteristics of t...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0159

    authors: Silvestrini M,Pinto-Maglio CA,Zucchi MI,dos Santos FA

    更新日期:2013-12-01 00:00:00

  • DNA distribution pattern and metabolite profile of wild edible lobster mushroom (Hypomyces lactifluorum/Russula brevipes).

    abstract::Lobster mushroom is a wild edible mushroom with potential commercial value. It is the product resulting of the infection, most commonly of Russula brevipes, by Hypomyces lactifluorum. This study undertook quantitative polymerase chain reaction analysis of tissues sampled at different infection stages to investigate R....

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0168

    authors: Laperriere G,Desgagné-Penix I,Germain H

    更新日期:2018-05-01 00:00:00

  • RAPD-based genetic linkage maps of yellow passion fruit (Passiflora edulis Sims. f. flavicarpa Deg.).

    abstract::A single cross between two clones of passion fruit (Passiflora edulis Sims. f. flavicarpa Deg., 2n = 18) was selected for genetic mapping. The mapping population was composed of 90 F1 plants derived from a cross between 'IAPAR 123' (female parent) and 'IAPAR 06' (male parent). A total of 380 RAPD primers were analyzed...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-035

    authors: Carneiro MS,Camargo LE,Coelho AS,Vencovsky R,Rui PL,Stenzel NM,Vieira ML

    更新日期:2002-08-01 00:00:00

  • Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach 1.

    abstract::Bacteria are essential components of natural environments. They contribute to ecosystem functioning through roles as mutualists and pathogens for larger species, and as key components of food webs and nutrient cycles. Bacterial communities respond to environmental disturbances, and the tracking of these communities ac...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2018-0064

    authors: Farrell MJ,Govender D,Hajibabaei M,van der Bank M,Davies TJ

    更新日期:2019-03-01 00:00:00

  • An RFLP species-specific DNA sequence for the A genome of rice.

    abstract::A DNA sequence, pOs6.20, was cloned from the nuclear genome of cultivated rice (Oryza sativa L.) by hybridization with a human minisatellite sequence. At high hybridization stringency, a subfragment of the rice sequence, pOs6.20.3, detected low-copy restriction fragment length polymorphisms (RFLPs), which behaved as M...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-061

    authors: Dallas JF,McIntyre CL,Gustafson JP

    更新日期:1993-06-01 00:00:00

  • Clonal variation in the parthenogenetic rock lizard Lacerta armeniaca.

    abstract::Genetic diversity at 35 allozyme loci was surveyed in seven populations of Lacerta armeniaca. Fixed heterozygotes were present at 16 loci, with homozygotes at 17 loci. Variation occurred at two loci, one in each of two populations, indicating one widespread clone, one restricted clone, and one apparently restricted cl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-141

    authors: Macculloch RD,Murphy RW,Kupriyanova LA,Darevsky IS,Danielyan FD

    更新日期:1995-12-01 00:00:00

  • A novel QTL for Septoria speckled leaf blotch resistance in barley (Hordeum vulgare L.) accession PI 643302 by whole-genome QTL mapping.

    abstract::Septoria speckled leaf blotch (SSLB), caused by Septoria passerinii, is one of the most important foliar diseases of barley (Hordeum vulgare L.) in North America. The primary problem caused by this disease is substantial yield loss. The objective of this study was to determine the chromosomal location of SSLB resistan...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g10-032

    authors: Yu GT,Franckowiak JD,Lee SH,Horsley RD,Neate SM

    更新日期:2010-08-01 00:00:00

  • TaqI digestion reveals fractions of satellite DNAs on human chromosomes.

    abstract::Restriction endonuclease TaqI has been known as a nonbanding restriction endonuclease when it is used on fixed human chromosomes. However, a specific TaqI digestion can be obtained after varying experimental conditions such as concentration of enzyme, time of incubation, and volume of the final reaction mixture. This ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g91-039

    authors: Tagarro I,González-Aguilera JJ,Fernández-Peralta AM

    更新日期:1991-04-01 00:00:00

  • Gene expression patterns indicate that a high-fat-high-carbohydrate diet causes mitochondrial dysfunction in fish.

    abstract::Expensive and unsustainable fishmeal is increasingly being replaced with cheaper lipids and carbohydrates as sources of energy in aquaculture. Although it is known that the excess of lipids and carbohydrates has negative effects on nutrient utilization, growth, metabolic homeostasis, and health of fish, our current un...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2018-0159

    authors: Prisingkorn W,Jakovlić I,Yi SK,Deng FY,Zhao YH,Wang WM

    更新日期:2019-02-01 00:00:00

  • Changes of cytosine methylation induced by wide hybridization and allopolyploidy in Cucumis.

    abstract::We previously demonstrated that allopolyploidization could induce phenotypic variations and genome changes in a newly synthesized allotetraploid in Cucumis. To explore the molecular involvement of epigenetic phenomena, we investigated cytosine methylation in Cucumis by using methylation-sensitive amplified polymorphis...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/G08-063

    authors: Chen L,Chen J

    更新日期:2008-10-01 00:00:00

  • Sewall Wright and quantitative genetics.

    abstract::Some aspects of Wright's great contribution to quantitative genetics and animal breeding are reviewed in relation to current research and practice. Particular aspects discussed are as follows: the utility of his definition of inbreeding coefficient in terms of the correlation of uniting gametes; the maintenance of gen...

    journal_title:Genome

    pub_type: 传,历史文章,杂志文章,评审

    doi:10.1139/g89-033

    authors: Hill WG

    更新日期:1989-01-01 00:00:00

  • Chromosome banding patterns in the annual species of Cicer.

    abstract::Somatic karyotypes of the nine annual species of Cicer (2n = 16) were analyzed using C-banding. Highly significant differences in haploid genome length and C-band positive heterochromatin content were observed. The haploid genome length ranged from 20.0 μm in the wild species C. judaicum to 28.7 μm in the cultiv...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g94-093

    authors: Tayyar RI,Lukaszewski AJ,Waines JG

    更新日期:1994-08-01 00:00:00