Abstract:
:Amino acid networks (AANs) are undirected networks consisting of amino acid residues and their interactions in three-dimensional protein structures. The analysis of AANs provides novel insight into protein science, and several common amino acid network properties have revealed diverse classes of proteins. In this review, we first summarize methods for the construction and characterization of AANs. We then compare software tools for the construction and analysis of AANs. Finally, we review the application of AANs for understanding protein structure and function, including the identification of functional residues, the prediction of protein folding, analyzing protein stability and protein-protein interactions, and for understanding communication within and between proteins.
journal_name
Amino Acidsjournal_title
Amino acidsauthors
Yan W,Zhou J,Sun M,Chen J,Hu G,Shen Bdoi
10.1007/s00726-014-1710-6subject
Has Abstractpub_date
2014-06-01 00:00:00pages
1419-39issue
6eissn
0939-4451issn
1438-2199journal_volume
46pub_type
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