The construction of an amino acid network for understanding protein structure and function.

Abstract:

:Amino acid networks (AANs) are undirected networks consisting of amino acid residues and their interactions in three-dimensional protein structures. The analysis of AANs provides novel insight into protein science, and several common amino acid network properties have revealed diverse classes of proteins. In this review, we first summarize methods for the construction and characterization of AANs. We then compare software tools for the construction and analysis of AANs. Finally, we review the application of AANs for understanding protein structure and function, including the identification of functional residues, the prediction of protein folding, analyzing protein stability and protein-protein interactions, and for understanding communication within and between proteins.

journal_name

Amino Acids

journal_title

Amino acids

authors

Yan W,Zhou J,Sun M,Chen J,Hu G,Shen B

doi

10.1007/s00726-014-1710-6

subject

Has Abstract

pub_date

2014-06-01 00:00:00

pages

1419-39

issue

6

eissn

0939-4451

issn

1438-2199

journal_volume

46

pub_type

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