Abstract:
:The interaction of the monofunctional chorismate mutase from Bacillus subtilis with chorismate and prephenate has been studied kinetically and by NMR spectroscopy with 13C specifically labeled substrates. Prephenate dominates the population of enzyme-bound species, and the "off" rate constant (approximately 60 s-1) obtained from line-broadening experiments is close to the value of kcat for chorismate (50 s-1) determined kinetically. The calculated "on" rate constant for prephenate (8 x 10(5) M-1 s-1) is similar to the value of kcat/Km for chorismate (5 x 10(5) M-1 s-1). The kinetic parameters of the Bacillus mutase are remarkably insensitive to pH over a wide range and display no solvent isotope effect. These results suggest that the enzyme-catalyzed reaction may be encounter controlled (slowed from the diffusion limit by some feature of the enzyme's active site) and that kcat for chorismate is determined by the product off rate. There is now no evidence to suggest that the skeletal rearrangement on the enzyme surface occurs by a pathway other than a pericyclic process.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Gray JV,Eren D,Knowles JRdoi
10.1021/bi00489a051subject
Has Abstractpub_date
1990-09-18 00:00:00pages
8872-8issue
37eissn
0006-2960issn
1520-4995journal_volume
29pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::Oligothymidylates covalently linked to iron-porphyrins were synthesized to target the nuclease activity of Fe-porphyrin to complementary polynucleotides. In the presence of oxygen and a reducing agent, oligo(dT)7 bearing the reactive group attached to the 3'-phosphate was shown to be active in the cleavage of poly(dA)...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00370a002
更新日期:1986-11-04 00:00:00
abstract::The crystal structures of the deoxy and carbonmonoxy forms of a distal pocket myoglobin mutant in which valine68(E11) is replaced by threonine have been solved to 2.1- and 2.2-A resolution, respectively. This substitution has been shown previously to cause large decreases in the rate of oxygen binding and to lower the...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00211a016
更新日期:1993-12-07 00:00:00
abstract::Arginine-binding RNA motifs are important to protein-RNA interaction and perhaps also for Archean biochemistry. Selection-amplification was used to isolate three RNAs that are eluted by free arginine from an L-arginine affinity column (Kd approximately 0.2-0.4 mM). The binding sites contain specific internal and bulge...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00072a002
更新日期:1993-06-01 00:00:00
abstract::We have previously shown that the anticodon of methionine tRNAs contains most, if not all, of the nucleotides required for specific recognition of tRNA substrates by Escherichia coli methionyl-tRNA synthetase [Schulman, L. H., & Pelka, H. (1988) Science 242, 765-768]. Previous cross-linking experiments have also ident...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00461a003
更新日期:1990-03-06 00:00:00
abstract::By suspending bovine rhodopsin in trehalose-water glass films, it is possible to trap photostates in the light-activation process. Because of the unusually high vitrification temperature of trehalose-water mixtures, this trapping can be accomplished at room temperature. This allows for a facile investigation of the sp...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00181a004
更新日期:1994-04-19 00:00:00
abstract::Over 70 transthyretin (TTR) mutations facilitate amyloidosis in tissues other than the central nervous system (CNS). In contrast, the D18G TTR mutation in individuals of Hungarian descent leads to CNS amyloidosis. D18G forms inclusion bodies in Escherichia coli, unlike the other disease-associated TTR variants overexp...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi027319b
更新日期:2003-06-10 00:00:00
abstract::Histone deacetylase 8 (HDAC8) is a well-characterized member of the class I acetyl-lysine deacetylase (HDAC) family. Previous work has shown that the efficiency of HDAC8-catalyzed deacetylation of a methylcoumarin peptide varies depending on the identity of the divalent metal ion in the HDAC8 active site. Here we demo...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.7b00851
更新日期:2017-10-24 00:00:00
abstract::Hepatic microsomal cytochrome P-450 from phenobarbital-pretreated rats is destroyed by propyne in a reduced nicotinamide adenine dinucleotide dependent process which also results in vivo in the accumulation of an abnormal green porphyrin. The green porphyrin has been identified by its electronic absorption, mass spect...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00528a033
更新日期:1981-12-08 00:00:00
abstract::Both activities of the aspartokinase--homoserine I (AK-HSD) of Escherichia coli are inhibited by threonine. Careful threonine binding studies have now been done which have allowed us to distinguish the various effects of threonine on the enzyme. The ultrafiltration technique of H. Paulus ((1969) Anal. Biochem. 32, 101...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00610a014
更新日期:1978-08-22 00:00:00
abstract::Opossum (Didelphis virginiana) serum was fractionated with (NH4)2SO4 and then chromatographed on DEAE-Sepharose and phenyl-Sepharose. Affinity chromatography on a protein A-Sepharose-antibody column removed traces of opossum serum metalloproteinase inhibitors, and resulted in a homogeneous preparation of opossum alpha...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00053a015
更新日期:1993-01-19 00:00:00
abstract::Previous work has indicated that following the rapid adenosine 5'-triphosphate (ATP) induced dissociation of the microtubule-dynein complex, the rate-limiting step in the ATPase cycle is product release [Johnson, K. A. (1983) J. Biol. Chem. 258, 13825-13832], which occurs at a rate of approximately 2-6 s-1. In this re...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00350a022
更新日期:1986-01-28 00:00:00
abstract::Reporter gene transactivation by human p53 is inhibited in budding yeast lacking the TRR1 gene encoding thioredoxin reductase. To investigate the role of thioredoxin in controlling p53 activity, the level of reporter gene transactivation by p53 was determined in yeast lacking the TRX1 and TRX2 genes encoding cytosolic...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi900757q
更新日期:2009-09-29 00:00:00
abstract::Polyclonal antibody to mitochondrial P-450c27/25 reacted with two proteins of apparent molecular masses of 52 kilodaltons (kDa) and 50 kDa from the female rat liver mitochondrial proteins bound to an omega-octylaminoagarose column. The two proteins were purified to greater than 85% homogeneity by DEAE-Sephacel and hyd...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00098a007
更新日期:1991-08-27 00:00:00
abstract::A new procedure for the synthesis of the pyrophosphate bond has been employed in the preparation of nucleoside dipyrophosphates from nucleoside 3',5'-diphosphates. The method makes use of a powerful phosphorylating agent generated in a mixture of cyanoethyl phosphate, dicyclohexylcarbodiimide, and mesitylenesulfonyl c...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00666a012
更新日期:1976-10-19 00:00:00
abstract::Dihydroorotate dehydrogenases (DHODs) oxidize dihydroorotate (DHO) to orotate using the FMN prosthetic group to abstract a hydride equivalent from C6 and a protein residue (Ser for Class 2 DHODs) to deprotonate C5. The fundamental question of whether the scission of the two DHO C-H bonds is concerted or stepwise was a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi060919g
更新日期:2006-12-19 00:00:00
abstract::In recent years, there has been dramatic growth in the study of RNA. RNA has gone from being known as an intermediate in the central dogma of molecular biology to a molecule with a large diversity of structure and function that is involved in all aspects of biology. As new functions are rapidly discovered, it has beco...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.7b01141
更新日期:2018-08-07 00:00:00
abstract::Although the addition of various divalent metals to beta-galactosidase resulted in apparent activation, only Mg2+ and Mn2+ actually did activate. The apparent activation by the other divalent metals was shown to be due to Mg2+ impurities. Calcium did not activate, but experiments suggested that it did bind. Other diva...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00586a005
更新日期:1979-09-18 00:00:00
abstract::To investigate cytosine protonation and its influence on the sequence-dependent thermal stability of DNA triplexes in detail, we have employed homo- and heteronuclear NMR experiments on specifically (15)N-labeled oligodeoxynucleotides that were designed to fold into intramolecular triple helices of the pyrimidine moti...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi992630n
更新日期:2000-05-16 00:00:00
abstract::Stabilization of the plasma membrane Ca-ATPase (PMCA) in an inactive conformation upon oxidation of multiple methionines in the calcium regulatory protein calmodulin (CaM) is part of an adaptive cellular response to minimize ATP utilization and the generation of reactive oxygen species (ROS) under conditions of oxidat...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0474113
更新日期:2005-03-29 00:00:00
abstract::Filamin A (FLNA) is a ubiquitously expressed actin cross-linking protein and a scaffold of numerous binding partners to regulate cell proliferation, migration, and survival. FLNA is a homodimer, and each subunit has an N-terminal actin-binding domain followed by 24 immunoglobulin-like repeats (R). FLNA mediates mechan...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.9b00100
更新日期:2019-11-26 00:00:00
abstract::Evidence for the NADH-modulated formation of a complex between alpha-glycerol-3-phosphate dehydrogenase and l-lactate dehydrogenase was reported [Yong, H., Thomas, G. A., and Peticolas, W. L. (1993) Biochemistry 32, 11124-11131]. This NADH-modulated association suggested a mechanism of potentially great importance to ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi027244b
更新日期:2003-05-27 00:00:00
abstract::The transcriptional activity of the hexafluorinated derivative of 1,25-dihydroxyvitamin D3 [1,25-(OH)2D3], 26,26,26,27,27,27-hexafluoro-1,25-dihydroxyvitamin D3 [F6-1,25-(OH)2D3], was examined in cultured cells by a transient expression assay (CAT assay) using expression vectors for the rat nuclear vitamin D3 receptor...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00001a045
更新日期:1995-01-10 00:00:00
abstract::Aquaporin-4 (AQP4) is the predominant water channel in the brain. Although AQP4 plays an important role in brain water homeostasis, the molecular mechanisms of AQP4 regulation are not fully understood. In this report, we show how Zn(2+) rapidly and reversibly decreases the water permeability of AQP4 when it is reconst...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi901762y
更新日期:2009-12-29 00:00:00
abstract::Several snake venoms contain a phospholipase A2 in which position 49 in the active site is occupied by a lysine or a serine instead of the aspartate residue normally found. Although these proteins do not bind Ca2+ and are devoid of catalytic activity, they are still highly specific myotoxins and have recently been sho...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00014a021
更新日期:1995-04-11 00:00:00
abstract::6-[(4-Bromo-2,3-dioxobutyl)thio]-6-deaminoadenosine 5'-diphosphate (6-BDB-TADP) has been shown to react at the reduced diphosphopyridine nucleotide (DPNH) inhibitory site of bovine liver glutamate dehydrogenase with incorporation of 1 mol of reagent/mol of enzyme subunit [Batra, S. P., & Colman, R. F. (1984) Biochemis...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00360a005
更新日期:1986-06-17 00:00:00
abstract::Protein L31 from the 50S ribosomal subunit of Escherichia coli was manually sequenced by the dansyl-Edman method. Owing to the availability of only small quantities of purified L31, sequencing methods were scaled down such that the entire primary structure could be determined with 700 microgram of protein. The techniq...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00596a020
更新日期:1978-02-07 00:00:00
abstract::The fatty acid synthase (FAS) of animal tissue is a dimer of two identical subunits, each with a Mr of 260,000. The subunit is a single multifunctional protein having seven catalytic activities and a site for binding of the prosthetic group 4'-phosphopantetheine. The mRNA coding for the subunit has an estimated size o...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00420a029
更新日期:1988-10-04 00:00:00
abstract::The expression of apoE mRNA in the adrenal gland is inversely correlated to steroidogenesis and directly correlated to the level of cholesteryl ester stores. To further investigate the relationship between apoE and cellular cholesterol homeostasis, several parameters of cholesterol metabolism in the murine Y1 adrenal ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00183a007
更新日期:1994-05-03 00:00:00
abstract::We have investigated the effect of increasing percentages of methylated pyrimidines on the structure of poly(dA-dU).poly(dA-dU). This was done by synthesizing analogous polynucleotides that contained deoxythymidine residues as well as deoxyuridine residues and observing their 31P NMR spectra in increasing amounts of C...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00341a033
更新日期:1985-09-24 00:00:00
abstract::EPR studies have revealed that removal of calcium using citric acid from the site in spinach photosystem II which is coupled to the photosynthetic O2-evolving process produces a structural change in the manganese cluster responsible for water oxidation. If done in the dark, this yields a modified S1' oxidation state w...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00450a032
更新日期:1989-11-28 00:00:00