Active Site Metal Identity Alters Histone Deacetylase 8 Substrate Selectivity: A Potential Novel Regulatory Mechanism.

Abstract:

:Histone deacetylase 8 (HDAC8) is a well-characterized member of the class I acetyl-lysine deacetylase (HDAC) family. Previous work has shown that the efficiency of HDAC8-catalyzed deacetylation of a methylcoumarin peptide varies depending on the identity of the divalent metal ion in the HDAC8 active site. Here we demonstrate that both HDAC8 activity and substrate selectivity for a diverse range of peptide substrates depend on the identity of the active site metal ion. Varied deacetylase activities of Fe(II)- and Zn(II)-HDAC8 toward an array of peptide substrates were identified using self-assembled monolayers for matrix-assisted laser desorption ionization (SAMDI) mass spectrometry. Subsequently, the metal dependence of deacetylation of peptides of biological interest was measured using an in vitro peptide assay. While Fe(II)-HDAC8 is generally more active than Zn(II)-HDAC8, the Fe(II)/Zn(II) HDAC8 activity ratio varies widely (from 2 to 150) among the peptides tested. These data provide support for the hypothesis that HDAC8 may undergo metal switching in vivo that, in turn, may regulate its activity. However, future studies are needed to explore the identity of the metal ion bound to HDAC8 in cells under varied conditions.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Castaneda CA,Lopez JE,Joseph CG,Scholle MD,Mrksich M,Fierke CA

doi

10.1021/acs.biochem.7b00851

subject

Has Abstract

pub_date

2017-10-24 00:00:00

pages

5663-5670

issue

42

eissn

0006-2960

issn

1520-4995

journal_volume

56

pub_type

杂志文章
  • Excitation-Wavelength-Dependent Photocycle Initiation Dynamics Resolve Heterogeneity in the Photoactive Yellow Protein from Halorhodospira halophila.

    abstract::Photoactive yellow proteins (PYPs) make up a diverse class of blue-light-absorbing bacterial photoreceptors. Electronic excitation of the p-coumaric acid chromophore covalently bound within PYP results in triphasic quenching kinetics; however, the molecular basis of this behavior remains unresolved. Here we explore th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01114

    authors: Mix LT,Carroll EC,Morozov D,Pan J,Gordon WR,Philip A,Fuzell J,Kumauchi M,van Stokkum I,Groenhof G,Hoff WD,Larsen DS

    更新日期:2018-03-20 00:00:00

  • Isolation and characterization of rat pancreatic elastase.

    abstract::Proelastase has been purified to homogeneity from rat pancreatic tissue by a combination of CM-Sephadex and immobilized protease inhibitor affinity resins. Trypsin activation yields an elastolytic enzyme that possesses a specificity toward small hydrophobic residues in synthetic amide substrates, similar to those of p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00285a008

    authors: Largman C

    更新日期:1983-08-02 00:00:00

  • Observation of multiple myosin subfragment 1-ADP-fluoroberyllate complexes by 19F NMR spectroscopy.

    abstract::Fluoroaluminate and fluoroberyllate are potent inhibitors of the ATPase activity of myosin. Inhibition requires the presence of ADP, and much evidence has accumulated to suggest that the tetrahedral fluoroaluminate and fluoroberyllate ions act as phosphate analogues, binding with high affinity at the active site in th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00090a022

    authors: Henry GD,Maruta S,Ikebe M,Sykes BD

    更新日期:1993-10-05 00:00:00

  • Effects of base mutations on topoisomerase II DNA cleavage stimulated by mAMSA in short DNA oligomers.

    abstract::DNA cleavage by topoisomerase II in the absence or presence of mAMSA, and VM-26 was investigated in a series of oligonucleotides of 36 and 42 base pairs, which were derived from the DNA sequence of the major topoisomerase II cleavage site in the matrix-associated region of SV40 DNA. Topoisomerase II introduced strand ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00052a020

    authors: Capranico G,Tinelli S,Zunino F,Kohn KW,Pommier Y

    更新日期:1993-01-12 00:00:00

  • DNA polymerase beta promotes recruitment of DNA ligase III alpha-XRCC1 to sites of base excision repair.

    abstract::Base excision repair is a major pathway for the removal of simple lesions in DNA including base damage and base loss (abasic site). Base excision repair requires the coordinated action of several repair and ancillary proteins, the impairment of which can lead to genetic instability. Using a protein-DNA cross-linking a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050085m

    authors: Parsons JL,Dianova II,Allinson SL,Dianov GL

    更新日期:2005-08-09 00:00:00

  • High-resolution phosphorus nuclear magnetic resonance spectroscopy of transfer ribonucleic acids: multiple conformations in the anticodon loop.

    abstract::The temperature dependence of the 31P NMR spectra of yeast phenylalanine tRNA, E. coli tyrosine, glutamate (2), and formylmethionine tRNA is presented. The major difference between the 31P NMR spectra of the different acceptor tRNAs is in the main cluster region between -0.5 and -1.3 ppm. This confirms an earlier assi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00266a018

    authors: Gorenstein DG,Goldfield EM

    更新日期:1982-11-09 00:00:00

  • Calcium-Induced Lipid Nanocluster Structures: Sculpturing of the Plasma Membrane.

    abstract::The plasma membrane of the cell is a complex, tightly regulated, heterogeneous environment shaped by proteins, lipids, and small molecules. Ca2+ ions are important cellular messengers, spatially separated from anionic lipids. After cell injury, disease, or apoptotic events, anionic lipids are externalized to the outer...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b01069

    authors: Hallock MJ,Greenwood AI,Wang Y,Morrissey JH,Tajkhorshid E,Rienstra CM,Pogorelov TV

    更新日期:2018-12-18 00:00:00

  • Functional groups at the catalytic site of BF1 adenosinetriphosphatase from Escherichia coli.

    abstract::The rates of inactivation of BF1 adenosinetriphosphatase (BF1-ATPase) from Escherichia coli by 7-chloro-4-nitro-2,1,3-benzoxadiazole, 1-fluoro-2,4-dinitrobenzene, 2,4,6-trinitrobenzenesulfonate, phenylglyoxal, and N,N'-dicyclohexylcarbodiimide have been measured in the presence and absence of various concentrations of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00531a011

    authors: Ting LP,Wang JH

    更新日期:1982-01-19 00:00:00

  • Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors.

    abstract::We systematically and quantitatively investigated the structure and thermodynamics of G-quadruplexes of RNAs and corresponding DNAs of the same sequences under molecular crowding conditions that mimic the high osmotic stress induced by the numerous molecules inside of living cells. Structural analyses demonstrated tha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1002822

    authors: Zhang DH,Fujimoto T,Saxena S,Yu HQ,Miyoshi D,Sugimoto N

    更新日期:2010-06-01 00:00:00

  • Circular dichroism and UV resonance raman study of the impact of alcohols on the Gibbs free energy landscape of an alpha-helical peptide.

    abstract::We used CD and UV resonance Raman spectroscopy to study the impact of alcohols on the conformational equilibria and relative Gibbs free energy landscapes along the Ramachandran Psi-coordinate of a mainly poly-Ala peptide, AP with an AAAAA(AAARA)(3)A sequence. 2,2,2-Trifluoroethanol (TFE) most stabilizes the alpha-heli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100176a

    authors: Xiong K,Asher SA

    更新日期:2010-04-20 00:00:00

  • Multiple-ligand binding in CYP2A6: probing mechanisms of cytochrome P450 cooperativity by assessing substrate dynamics.

    abstract::The contribution of ligand dynamics to CYP allosterism has not been considered in detail. On the basis of a previous study, we hypothesized that CYP2A6 and CYP2E1 accommodate multiple xylene ligands. As a result, the intramolecular ( k H/ k D) obs values observed for some xylene isomers are expected to be dependent on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi702020y

    authors: Harrelson JP,Atkins WM,Nelson SD

    更新日期:2008-03-04 00:00:00

  • Single-turnover and pre-steady-state kinetics of the reaction of the adenine glycosylase MutY with mismatch-containing DNA substrates.

    abstract::The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (OG) in DNA by the removal of misincorporated adenine residues in OG:A mispairs. MutY also exhibits adenine glycosylase activity toward...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981594+

    authors: Porello SL,Leyes AE,David SS

    更新日期:1998-10-20 00:00:00

  • Structural changes in cytochrome c upon hydrogen-deuterium exchange.

    abstract::The resonance Raman spectra of yeast ferri- and ferro-iso-1-cytochrome c dissolved in H2O and D2O are reported. Hydrogen exchange in the protein leads to distinct spectral changes of heme vibrational bands, particularly in the region between 670 and 710 cm-1 and at approximately 443 and approximately 450 cm-1. The lat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00214a013

    authors: Hildebrandt P,Vanhecke F,Heibel G,Mauk AG

    更新日期:1993-12-28 00:00:00

  • Electron transfer mechanism of the Rieske protein from Thermus thermophilus from solution nuclear magnetic resonance investigations.

    abstract::We report nuclear magnetic resonance (NMR) data indicating that the Rieske protein from the cytochrome bc complex of Thermus thermophilus (TtRp) undergoes modest redox-state-dependent and ligand-dependent conformational changes. To test models concerning the mechanism by which TtRp transfers between different sites on...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400296c

    authors: Hsueh KL,Tonelli M,Cai K,Westler WM,Markley JL

    更新日期:2013-04-30 00:00:00

  • A circumventing role for the non-native intermediate in the folding of β-lactoglobulin.

    abstract::Folding experiments have suggested that some proteins have kinetic intermediates with a non-native structure. A simple G ̅o model does not explain such non-native intermediates. Therefore, the folding energy landscape of proteins with non-native intermediates should have characteristic properties. To identify such pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200241a

    authors: Sakurai K,Fujioka S,Konuma T,Yagi M,Goto Y

    更新日期:2011-07-26 00:00:00

  • Metal ion binding to dog osteocalcin studied by 1H NMR spectroscopy.

    abstract::One-dimensional 1H NMR was employed to study the effects of Ca2+ and Lu3+ binding on the apo and calcium-saturated forms of dog bone Gla protein (BGP, osteocalcin). Titration of apo dog BGP with Ca2+ in 20 mM NaCl showed spectral perturbations consistent with the binding of 5 mol equiv of calcium in the NMR slow-excha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00093a012

    authors: Isbell DT,Du S,Schroering AG,Colombo G,Shelling JG

    更新日期:1993-10-26 00:00:00

  • Structural basis for light activation of a chloroplast enzyme: the structure of sorghum NADP-malate dehydrogenase in its oxidized form.

    abstract::Some key chloroplast enzymes are activated by light via a ferredoxin-thioredoxin reduction system which reduces disulfide bridges in the enzymes. We describe for the first time the structural basis for the redox activation of a chloroplast enzyme, the NADP-dependent malate dehydrogenase (MDH) from Sorghum vulgare whos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982876c

    authors: Johansson K,Ramaswamy S,Saarinen M,Lemaire-Chamley M,Issakidis-Bourguet E,Miginiac-Maslow M,Eklund H

    更新日期:1999-04-06 00:00:00

  • Sulphydryl group modification of aspartate aminotransferase with 3-bromo-1,1,1-trifluoropropanone during catalysis.

    abstract::After protection of cysteine-45 and -82 with iodoacetamide or N-ethylmaleimide, and in the presence of saturating concentrations of substrates, the supernatant isozyme of pig heart aspartate transaminase has been covalently modified at cysteine-390 with 3-bromo-1,1,1-trifluoropropanone. The modified enzyme retains 60-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00627a004

    authors: Critz WJ,Martinez-Carrion M

    更新日期:1977-04-19 00:00:00

  • Kinetics of the initial steps of rabbit psoas myofibrillar ATPases studied by tryptophan and pyrene fluorescence stopped-flow and rapid flow-quench. Evidence that cross-bridge detachment is slower than ATP binding.

    abstract::The kinetics of the tryptophan fluorescence enhancement that occurs when myofibrils (rabbit psoas) are mixed with Mg-ATP were studied by stopped-flow in different solvents (water, 40% ethylene glycol, 20% methanol) at 4 degrees C. Under relaxing conditions (low Ca(2+)) in water (mu = 0.16 M, pH 7.4) and at high ATP co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0004753

    authors: Stehle R,Lionne C,Travers F,Barman T

    更新日期:2000-06-27 00:00:00

  • Isolation, purification, and reconstitution of a proline carrier protein from Mycobacterium phlei.

    abstract::Membrane vesicles from Mycobacterium phlei contain carrier proteins for proline, glutamine, and glutamic acid. The transport of proline is Na+ dependent and required substrate oxidation. A proline carrier protein was solubilized from the membrane vesicles by treatment with cholate and Triton X-100. Electron microscopi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00578a015

    authors: Lee SH,Cohen NS,Jacobs AJ,Brodie AF

    更新日期:1979-05-29 00:00:00

  • Crystal structure analysis of a mutant Escherichia coli thioredoxin in which lysine 36 is replaced by glutamic acid.

    abstract::The structure of a mutant Escherichia coli thioredoxin with a glutamic acid substituted for a conserved lysine at position 36 adjacent to the active site has been solved using molecular replacement and refined at 2.0-A resolution to a crystallographic residual of 19.9%. The mutant was crystallized in an orthorhombic s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00070a017

    authors: Nikkola M,Gleason FK,Fuchs JA,Eklund H

    更新日期:1993-05-18 00:00:00

  • Use of recombinant cell-permeable small peptides to modulate glucocorticoid sensitivity of acute lymphoblastic leukemia cells.

    abstract::Glucocorticoid (GC) hormones induce apoptosis in T-cell and pre-B-cell acute lymphoblastic leukemia (ALL) cells. Steroid-mediated apoptosis requires a threshold level of the glucocorticoid receptor (GR) protein, and increasing the intracellular GR levels in ALL cells would augment their hormone sensitivity. A protein ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1007723

    authors: Geng CD,Vedeckis WV

    更新日期:2010-10-19 00:00:00

  • Linkage between operator binding and dimer to octamer self-assembly of bacteriophage lambda cI repressor.

    abstract::Cooperative binding of the bacteriophage lambda cI repressor dimer to specific sites of the phage operators OR and OL controls the developmental state of the phage. Cooperativity has long been thought to be mediated by self-assembly of repressor dimers to form tetramers which can bind simultaneously to adjacent operat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971368k

    authors: Rusinova E,Ross JB,Laue TM,Sowers LC,Senear DF

    更新日期:1997-10-21 00:00:00

  • Metal ion and substrate binding to bovine galactosyltransferase.

    abstract::Bovine milk galactosyltransferase was examined by ESR and NMR proton relaxation measurements to determine the stoichiometry and nature of manganese and UDP-Gal substrate binding. The ESR and NMR data clearly showed the binding of two (Mn(II) per mol of enzyme in the ternary complex (enzyme-manganese-UDP-Gal). The affi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00546a017

    authors: Andree PJ,Berliner LJ

    更新日期:1980-03-04 00:00:00

  • Crystal structure of recombinant human platelet factor 4.

    abstract::The crystal structure of human platelet factor 4 (PF4) has been solved to a resolution of 2.4 A by molecular replacement and refined to an R-factor of 24.1%. The structure consists of four polypeptide chains which form a tetrameric unit. N-terminal residues, previously defined as a random coil or extended loop region,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00193a025

    authors: Zhang X,Chen L,Bancroft DP,Lai CK,Maione TE

    更新日期:1994-07-12 00:00:00

  • Identification of determinants for inhibitor binding within the RNA active site of human telomerase using PNA scanning.

    abstract::Telomerase is a ribonucleoprotein that participates in the maintenance of telomere length. Its activity is up-regulated in many tumor types, suggesting that it may be a novel target for chemotherapy. The RNA component of telomerase contains an active site that plays at least two roles&sbd;binding telomere ends and tem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970438k

    authors: Hamilton SE,Pitts AE,Katipally RR,Jia X,Rutter JP,Davies BA,Shay JW,Wright WE,Corey DR

    更新日期:1997-09-30 00:00:00

  • Dynamics of ligand binding to alpha-chymotrypsin and to N-methyl-alpha-chymotrypsin.

    abstract::Ks values for binding of selected substrates, competitive inhibitors, and a noncompetitive inhibitor were found to be similar for alpha-chymotrypsin and N-methyl-alpha-chymotrypsin. The rates and steps of binding of a competitive inhibitor and a noncompetitive inhibitor were also found to be similar for alpha-chymotry...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00262a017

    authors: Maehler R,Whitaker JR

    更新日期:1982-09-14 00:00:00

  • Inhibition of protein synthesis in vesicular stomatitis virus infected Chinese hamster ovary cells: role of virus mRNA-ribonucleoprotein particle.

    abstract::Although host protein synthesis is preferentially inhibited, there is a steady decline in the ability of Chinese hamster ovary (CHO) cells infected with vesicular stomatitis virus (VSV) to synthesize both host and viral proteins. We previously reported finding an mRNA-ribonucleoprotein particle (mRNP) that contained a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a014

    authors: Rosen CA,Siekierka J,Ennis HL,Cohen PS

    更新日期:1984-05-22 00:00:00

  • Recombinant expression, biochemical characterization, and biological activities of the human MGSA/gro protein.

    abstract::Melanoma growth stimulatory activity (MGSA) is a mitogenic protein secreted by Hs294T melanoma cells that corresponds to the polypeptide encoded by the human gro gene. The MGSA/gro cDNA has been expressed in mammalian cells and the secreted recombinant factor has been purified. Biochemical and biological characterizat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00496a011

    authors: Balentien E,Han JH,Thomas HG,Wen DZ,Samantha AK,Zachariae CO,Griffin PR,Brachmann R,Wong WL,Matsushima K

    更新日期:1990-11-06 00:00:00

  • Insulin signaling in the yeast Saccharomyces cerevisiae. 1. Stimulation of glucose metabolism and Snf1 kinase by human insulin.

    abstract::Effects of human insulin on glucose metabolism in the yeast Saccharomyces cerevisiae were studied in this report. Under two conditions of growth limitation (glucose-grown cells during transition to stationary phase or spheroplasts during incubation in synthetic glucose medium), human insulin (10 and 1 microM, respecti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972071p

    authors: Müller G,Rouveyre N,Crecelius A,Bandlow W

    更新日期:1998-06-16 00:00:00