Isolation and identification of cysteinyl peptide labeled by 6- [( 4-bromo-2,3-dioxobutyl)thio]-6-deaminoadenosine 5'-diphosphate in the reduced diphosphopyridine nucleotide inhibitory site of glutamate dehydrogenase.

Abstract:

:6-[(4-Bromo-2,3-dioxobutyl)thio]-6-deaminoadenosine 5'-diphosphate (6-BDB-TADP) has been shown to react at the reduced diphosphopyridine nucleotide (DPNH) inhibitory site of bovine liver glutamate dehydrogenase with incorporation of 1 mol of reagent/mol of enzyme subunit [Batra, S. P., & Colman, R. F. (1984) Biochemistry 23, 4940-4946]. The modified enzyme had lost one of the six free sulfhydryl groups per enzyme subunit as detected by 5,5'-dithiobis(2-nitrobenzoate). In the unmodified enzyme digested with trypsin, six cysteinyl peptides labeled with [14C]iodoacetic acid were detected by high-performance liquid chromatography (HPLC), whereas only five were observed in the 6-BDB-TADP-modified enzyme. A cysteinyl peptide has been isolated from modified enzyme digested with trypsin and chymotrypsin. Purification of the nucleotidyl peptide was accomplished by chromatography on phenyl boronate-agarose, followed by gel filtration on Sephadex G-25 and Bio-Gel P-4 in 50 mM ammonium bicarbonate, pH 8.0. The modified peptides were finally purified by HPLC on a C18 column using 0.1% trifluoroacetic acid with an acetonitrile gradient. By comparison of the amino acid composition and N-terminal residue of the isolated peptide with the known amino acid sequence of the enzyme, the peptide in the DPNH inhibitory site labeled by 6-BDB-TADP has been identified as the 19-membered fragment from Glu-311 to Lys-329. A unique residue, Cys-319, was identified as the reactive amino acid within the DPNH inhibitory site.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Batra SP,Colman RF

doi

10.1021/bi00360a005

subject

Has Abstract

pub_date

1986-06-17 00:00:00

pages

3508-15

issue

12

eissn

0006-2960

issn

1520-4995

journal_volume

25

pub_type

杂志文章
  • Phase-resolved spectral measurements with several two tryptophan containing proteins.

    abstract::We have used frequency domain fluorescence techniques to resolve the component emission spectra for several two tryptophan containing proteins (e.g., horse liver alcohol dehydrogenase, sperm whale apomyoglobin, yeast 3-phosphoglycerate kinase, apoazurin from Alcaligenes denitricans). We have first performed multifrequ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00399a047

    authors: Eftink MR,Wasylewski Z,Ghiron CA

    更新日期:1987-12-15 00:00:00

  • Campylobacter jejuni KDO8P Synthase, Its Inhibition by KDO8P Oxime, and Control of the Residence Time of Slow-Binding Inhibition.

    abstract::3-Deoxy-d- manno-2-octulosonate-8-phosphate (KDO8P) synthase catalyzes the first step of lipopolysaccharide biosynthesis, namely condensation of phosphoenolpyruvate (PEP) with arabinose 5-phosphate (A5P), to produce KDO8P. We have characterized Campylobacter jejuni KDO8P synthase and its inhibition by KDO8P oxime. It ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00748

    authors: Gama SR,Balachandran N,Berti PJ

    更新日期:2018-09-11 00:00:00

  • Autocatalytically fragmented light chain of botulinum a neurotoxin is enzymatically active.

    abstract::The zinc-endopeptidase light chain of botulinum A neurotoxin undergoes autocatalytic fragmentation that is accelerated by the presence of the metal cofactor, zinc [Ahmed, S. A. et al. (2001) J. Protein Chem. 20, 221-231]. We show in this paper that >95% fragmented light chain obtained in the absence of added zinc reta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030062c

    authors: Ahmed SA,McPhie P,Smith LA

    更新日期:2003-11-04 00:00:00

  • Effects of base mutations on topoisomerase II DNA cleavage stimulated by mAMSA in short DNA oligomers.

    abstract::DNA cleavage by topoisomerase II in the absence or presence of mAMSA, and VM-26 was investigated in a series of oligonucleotides of 36 and 42 base pairs, which were derived from the DNA sequence of the major topoisomerase II cleavage site in the matrix-associated region of SV40 DNA. Topoisomerase II introduced strand ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00052a020

    authors: Capranico G,Tinelli S,Zunino F,Kohn KW,Pommier Y

    更新日期:1993-01-12 00:00:00

  • Interactions between heme d and heme b595 in quinol oxidase bd from Escherichia coli: a photoselection study using femtosecond spectroscopy.

    abstract::Femtosecond spectroscopy was performed on CO-liganded (fully reduced and mixed-valence states) and O(2)-liganded quinol oxidase bd from Escherichia coli. Substantial polarization effects, unprecedented for optical studies of heme proteins, were observed in the CO photodissociation spectra, implying interactions betwee...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0158019

    authors: Borisov VB,Liebl U,Rappaport F,Martin JL,Zhang J,Gennis RB,Konstantinov AA,Vos MH

    更新日期:2002-02-05 00:00:00

  • The structure of a soluble chemoreceptor suggests a mechanism for propagating conformational signals.

    abstract::Transmembrane chemoreceptors, also known as methyl-accepting chemotaxis proteins (MCPs), translate extracellular signals into intracellular responses in the bacterial chemotaxis system. MCP ligand binding domains control the activity of the CheA kinase, situated approximately 200 A away, across the cytoplasmic membran...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801727m

    authors: Pollard AM,Bilwes AM,Crane BR

    更新日期:2009-03-10 00:00:00

  • p21rac does not participate in the early interaction between p47-phox and cytochrome b558 that leads to phagocyte NADPH oxidase activation in vitro.

    abstract::The phagocyte superoxide-generating NADPH oxidase, a multicomponent, membrane-bound electron transport chain, consists of cytochrome b558, p47-phox, p67-phox, and p21rac1 or p21rac2. The mechanisms of oxidase assembly are poorly understood. In previous studies using a cell-free NADPH oxidase system, we showed that pre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00175a018

    authors: Kleinberg ME,Malech HL,Mital DA,Leto TL

    更新日期:1994-03-08 00:00:00

  • The swapping of terminal arms in ribonucleases: comparison of the solution structure of monomeric bovine seminal and pancreatic ribonucleases.

    abstract::Bovine seminal ribonuclease (BS-RNase), the only dimeric protein among the pancreatic-like ribonucleases, is endowed with special structural features and with biological functions beyond enzymatic activity. In solution, the protein exists as an equilibrium mixture of two forms, with or without exchange (or swapping) o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0342517

    authors: Avitabile F,Alfano C,Spadaccini R,Crescenzi O,D'Ursi AM,D'Alessio G,Tancredi T,Picone D

    更新日期:2003-07-29 00:00:00

  • Evolutionary coadaptation of the motif 2--acceptor stem interaction in the class II prolyl-tRNA synthetase system.

    abstract::Known crystal structures of class II aminoacyl-tRNA synthetases complexed to their cognate tRNAs reveal that critical acceptor stem contacts are made by the variable loop connecting the beta-strands of motif 2 located within the catalytic core of class II synthetases. To identify potential acceptor stem contacts made ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001835p

    authors: Burke B,Yang F,Chen F,Stehlin C,Chan B,Musier-Forsyth K

    更新日期:2000-12-19 00:00:00

  • Conformations of cytochrome oxidase: thermodynamic evaluation of the interconversion of the 418- and 428-nm forms.

    abstract::Oxidized cytochrome c oxidase exists in two reasonably well-defined conformations, a high-spin conformation with maximal absorption at 418 nm and a low-spin conformation with maximal absorption at 428 nm. The equilibrium between these two conformations has been studied as a function of pH, pressure, and temperature. p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00265a009

    authors: Kornblatt JA,Hui Bon Hoa G

    更新日期:1982-10-26 00:00:00

  • Kinetic folding and cis/trans prolyl isomerization of staphylococcal nuclease. A study by stopped-flow absorption, stopped-flow circular dichroism, and molecular dynamics simulations.

    abstract::We studied the urea-induced unfolding transition of staphylococcal nuclease (SNase) and its five proline mutants (P47A, P47T, P117G, P47T/P117G, and P47A/P117G) [corrected] by peptide and aromatic circular dichroism and aromatic absorption spectroscopy at equilibrium and the refolding-unfolding kinetics of the protein...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi963174v

    authors: Ikura T,Tsurupa GP,Kuwajima K

    更新日期:1997-05-27 00:00:00

  • Catalysis of RNA cleavage by a ribozyme derived from the group I intron of Anabaena pre-tRNA(Leu).

    abstract::In the cyanobacterium Anabaena PCC7120, the precursor to tRNA(Leu) contains a 249-nucleotide group I intron that undergoes efficient self-splicing in vitro. By deleting the 5' and 3' splice sites, this intron has now been converted to an RNA enzyme that uses a guanosine nucleophile to cleave substrate RNAs (S) with mu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00253a033

    authors: Zaug AJ,Dávila-Aponte JA,Cech TR

    更新日期:1994-12-13 00:00:00

  • Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.

    abstract::Glutamate mutase is one of a group of adenosylcobalamin-dependent enzymes that catalyze unusual isomerizations that proceed through organic radical intermediates generated by homolytic fission of the coenzyme's unique cobalt-carbon bond. These enzymes are part of a larger family of enzymes that catalyze radical chemis...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0616908

    authors: Cheng MC,Marsh EN

    更新日期:2007-01-23 00:00:00

  • A Cyclic Mimic of HIV Tat Differentiates Similar TAR RNAs on the Basis of Distinct Dynamic Behaviors.

    abstract::Efforts toward the development of RNA-based drug leads have been challenging because of the complexity and dynamic nature of RNA structures as therapeutic targets. The transactivation response (TAR) RNA and cognate Tat protein of HIV have long been recognized as promising antiviral targets, and recent works have ident...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00325

    authors: Lu J,Nguyen L,Zhao L,Xia T,Qi X

    更新日期:2015-06-16 00:00:00

  • Competition between Different S-Components for the Shared Energy Coupling Factor Module in Energy Coupling Factor Transporters.

    abstract::Energy coupling factor (ECF) transporters take up micronutrients in Bacteria and Archaea. They consist of a membrane-embedded S-component that provides substrate specificity and a three-subunit ECF module that couples ATP hydrolysis to transport. The S-components ThiT (for thiamin) and NiaX (for niacin) from Lactococc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00609

    authors: Majsnerowska M,Ter Beek J,Stanek WK,Duurkens RH,Slotboom DJ

    更新日期:2015-08-11 00:00:00

  • Mechanistic and metabolic inferences from the binding of substrate analogues and products to arginase.

    abstract::Arginase is a binuclear Mn(2+) metalloenzyme that catalyzes the hydrolysis of L-arginine to L-ornithine and urea. X-ray crystal structures of arginase complexed to substrate analogues N(omega)-hydroxy-L-arginine and N(omega)-hydroxy-nor-L-arginine, as well as the products L-ornithine and urea, complete a set of struct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002318+

    authors: Cox JD,Cama E,Colleluori DM,Pethe S,Boucher JL,Mansuy D,Ash DE,Christianson DW

    更新日期:2001-03-06 00:00:00

  • A heuristic approach to the analysis of enzymic catalysis: reaction of delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-alpha-aminobutyrate and delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-allylglycine catalyzed by isopenicillin N synthase isozymes.

    abstract::Isopenicillin N synthase (IPNS) catalyzes the oxidative cyclization of delta-(L-alpha-aminoadipoyl)-L-cysteinyl-D-valine to isopenicillin N. It is proposed that the multiple products produced from certain substrate analogues result from pathway branching after formation of a ferryl oxene intermediate. We have been int...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00022a031

    authors: Blackburn JM,Sutherland JD,Baldwin JE

    更新日期:1995-06-06 00:00:00

  • Use of azidobestatin as a photoaffinity label to identify the active site peptide of leucine aminopeptidase.

    abstract::Aminopeptidases catalyze the hydrolysis of amino acid residues from the amino terminus of peptide substrates. They are found in most cells and tissues, and their activity has been implicated in myriad fundamental biochemical and physiological processes. Nevertheless, little is known about the structure of the aminopep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00131a034

    authors: Taylor A,Peltier CZ,Jahngen EG Jr,Laxman E,Szewczuk Z,Torre FJ

    更新日期:1992-04-28 00:00:00

  • Amyloid formation via supramolecular peptide assemblies.

    abstract::Amyloid fibrils have been classically defined as linear, nonbranched polymeric proteins with a cross beta-sheet structure and the ability to alter the optical properties of the amyloid-specific dye Congo Red. Mounting evidence suggests that soluble oligomeric peptide assemblies approximately 2-20 nm in diameter are cr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700247y

    authors: Moore RA,Hayes SF,Fischer ER,Priola SA

    更新日期:2007-06-19 00:00:00

  • Binding of beta-scorpion toxin: a physicochemical study.

    abstract::The binding to rat brain synaptosomes of a beta-scorpion toxin, i.e., toxin II of Centruroides suffusus suffusus (Css II), was studied as a function of pH, temperature, and concentration of some monovalent and divalent cations. At 10 degrees C and pH 6.0, the specific binding of 125I-labeled Css II corresponds to a si...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00301a018

    authors: Jover E,Bablito J,Couraud F

    更新日期:1984-03-13 00:00:00

  • Conservation of a helix-stabilizing dipole moment in the PP-fold family of regulatory peptides.

    abstract::Investigation of the charge distribution for all known members of the PP-fold family of peptides reveals a common pattern characterized by a cluster of negative charges in the beta-turn region and a cluster of positive charges in the receptor-binding region of the peptide. Detailed analysis of the electrostatic proper...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00063a005

    authors: Bjørnholm B,Jørgensen FS,Schwartz TW

    更新日期:1993-03-30 00:00:00

  • Conformational Dynamics of Specific Aβ Oligomers Govern Their Ability To Replicate and Induce Neuronal Apoptosis.

    abstract::Oligomers of amyloid-β (Aβ) have emerged as the primary toxic agents responsible for early synaptic dysfunction and neuronal death in Alzheimer's disease (AD). Characterization of oligomers is an important step in the progress toward delineating the complex molecular mechanisms involved in AD pathogenesis. In our prev...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00161

    authors: Dean DN,Pate KM,Moss MA,Rangachari V

    更新日期:2016-04-19 00:00:00

  • Selective inhibition by methoxyamine of the apurinic/apyrimidinic endonuclease activity associated with pyrimidine dimer-DNA glycosylases from Micrococcus luteus and bacteriophage T4.

    abstract::The UV endonucleases [endodeoxyribonuclease (pyrimidine dimer), EC 3.1.25.1] from Micrococcus luteus and bacteriophage T4 possess two catalytic activities specific for the site of cyclobutane pyrimidine dimers in UV-irradiated DNA: a DNA glycosylase that cleaves the 5'-glycosyl bond of the dimerized pyrimidines and an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a011

    authors: Liuzzi M,Weinfeld M,Paterson MC

    更新日期:1987-06-16 00:00:00

  • Preferential assembly of the tropomyosin heterodimer: equilibrium studies.

    abstract::Thermal unfolding/refolding studies of the three tropomyosin dimers, alpha alpha, alpha beta, and beta beta, from chicken gizzard muscle were performed to explain the preferential assembly of alpha- and beta-tropomyosin subunits into heterodimers, alpha beta [Lehrer, S. S., & Qian, Y. (1989) J. Biol. Chem. 265, 1134]....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00237a007

    authors: Lehrer SS,Stafford WF 3rd

    更新日期:1991-06-11 00:00:00

  • Mechanistic studies of the oxygen-mediated oxidation of nitrosylhemoglobin.

    abstract::Nitrosylhemoglobin (HbFe(II)NO) has been shown to be generated in vivo from the reaction of deoxyHb with NO(*) as well as with nitrite. Despite the physiological importance attributed to this form of Hb, its reactivity has not been investigated in detail. In this study, we showed that the rate of oxidation of HbFe(II)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0475929

    authors: Herold S,Röck G

    更新日期:2005-04-26 00:00:00

  • Olfactory transduction: cross-talk between second-messenger systems.

    abstract::Chemosensory cilia of olfactory receptor neurons contain an adenylate cyclase which is stimulated by high concentrations of odorants. Cyclic AMP produced by this enzyme has been proposed to act as second messenger in olfactory transduction. Here we report that olfactory cilia contain calmodulin and that calmodulin pot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00469a004

    authors: Anholt RR,Rivers AM

    更新日期:1990-05-01 00:00:00

  • Acetylation of lysine 92 improves the chaperone and anti-apoptotic activities of human αB-crystallin.

    abstract::αB-Crystallin is a chaperone and an anti-apoptotic protein that is strongly expressed in many tissues, including the lens, retina, heart, and kidney. In the human lens, several lysine residues in αB-crystallin are acetylated. We have previously shown that such acetylation is predominant at lysine 92 (K92) and lysine 1...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400638s

    authors: Nahomi RB,Huang R,Nandi SK,Wang B,Padmanabha S,Santhoshkumar P,Filipek S,Biswas A,Nagaraj RH

    更新日期:2013-11-12 00:00:00

  • Interaction of assembly protein AP-2 and its isolated subunits with clathrin.

    abstract::The clathrin assembly protein complex AP-2 is a multimeric subunit complex consisting of two 100-115-kDa subunits known as alpha and beta and 50- and 16-kDa subunits. The subunits have been dissociated and separated by ion-exchange chromatography in 7.5 M urea. Fractions highly enriched in either the alpha or beta sub...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00236a036

    authors: Prasad K,Keen JH

    更新日期:1991-06-04 00:00:00

  • Hypertriglyceridemic VLDL decreases plasminogen binding to endothelial cells and surface-localized fibrinolysis.

    abstract::The effect of normo (NTG)- and hypertriglyceridemic (HTG)-VLDL on cultured human umbilical vein endothelial cell (HUVEC) surface-localized fibrinolysis was examined following pre-incubation with NTG-, HTG-VLDL, LDL (1-20 micrograms/mL) or buffer (control). Ligand binding assays, using 125I-labeled tcu-PA, t-PA, or Glu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952032i

    authors: Li XN,Koons JC,Benza RL,Parks JM,Varma VK,Bradley WA,Gianturco SH,Taylor KB,Grammer JR,Tabengwa EM,Booyse FM

    更新日期:1996-05-14 00:00:00

  • Parameters affecting the elongation block by RNA polymerase II at the SV40 attenuator 1 in vitro.

    abstract::We have previously suggested that folding of the SV40 attenuator RNA 1 into two hairpin elements leads to a block of transcription elongation. Using site-directed mutagenesis, we created three templates that either strengthened or weakened the proposed hairpin structures. The mutated and wild-type templates were clone...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00150a034

    authors: Goldring NB,Kessler M,Aloni Y

    更新日期:1992-09-08 00:00:00