Mechanistic studies of the oxygen-mediated oxidation of nitrosylhemoglobin.

Abstract:

:Nitrosylhemoglobin (HbFe(II)NO) has been shown to be generated in vivo from the reaction of deoxyHb with NO(*) as well as with nitrite. Despite the physiological importance attributed to this form of Hb, its reactivity has not been investigated in detail. In this study, we showed that the rate of oxidation of HbFe(II)NO by O(2) does not depend on the O(2) concentration. The reaction time courses had to be fitted to a two-exponential expression, and the obtained rates were approximately 2 x 10(-)(4) and 1 x 10(-)(4) s(-)(1), respectively. In the presence of the allosteric effector inositol hexaphosphate (IHP), the value for the fast component of the rate was significantly larger (44 x 10(-)(4) s(-)(1)) whereas that for the slow step was only slightly higher (2.5 x 10(-)(4) s(-)(1)). Moreover, we found that both in the absence and in the presence of IHP the rate of the O(2)-mediated oxidation of HbFe(II)NO is essentially identical to that of NO(*) dissociation from HbFe(II)NO, determined under analogous conditions by replacement of NO(*) with CO in the presence of an excess of dithionite. Taken together, our data show that the reaction between O(2) and HbFe(II)NO proceeds in three steps via dissociation of NO(*) (rate-determining step), binding of O(2) to deoxyHb, and NO(*)-mediated oxidation of oxyHb to metHb and nitrate.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Herold S,Röck G

doi

10.1021/bi0475929

subject

Has Abstract

pub_date

2005-04-26 00:00:00

pages

6223-31

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • Catalytic mechanism of enzymes: preorganization, short strong hydrogen bond, and charge buffering.

    abstract::During the past decade, there has been much debate about the enormous catalytic rate enhancement observed in enzymatic reactions involving carbanion intermediates. Our recent theoretical study has demonstrated the importance of the short strong hydrogen bond (SSHB) in the enzymatic reactions. Nevertheless, other recen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0255118

    authors: Kim KS,Kim D,Lee JY,Tarakeshwar P,Oh KS

    更新日期:2002-04-23 00:00:00

  • Solvent proton magnetic resonance dispersion in protocatechuate 3,4-dioxygenase and complexes with 3-halo-4-hydroxybenzoate inhibitors.

    abstract::Solvent proton nuclear magnetic dispersion studies at 25, 100, and 300 MHz have been performed on protocatechuate 3,4-dioxygenase (PCD) and its complexes with 3-chloro-4-hydroxybenzoate and 3-fluoro-4-hydroxybenzoate. Longitudinal and transverse relaxation rates were measured for these compounds and for the apoenzyme....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00312a024

    authors: Felton RH,Gordon SL,Sowell AL,May SW

    更新日期:1984-08-14 00:00:00

  • Transient kinetics of electron-transfer reactions of flavodoxins.

    abstract::Stopped-flow and laser photolysis methods have been used to investigate the rates of electron-transfer reactions of fully reduced riboflavin and the three oxidation states of Clostridium pasteurianum flavodoxin. Both normal and 7,8-dichloroflavin analogues were studied. Redox reagents included oxygen, ferricyanide, fe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00521a005

    authors: Jung J,Tollin G

    更新日期:1981-09-01 00:00:00

  • Soybean lipoxygenase-1 oxygenates synthetic polyenoic fatty acids with an altered positional specificity: evidence for inverse substrate alignment.

    abstract::The positional specificity is the decisive enzyme property for classification of lipoxygenases and for the currently used lipoxygenase nomenclature. It has been reported before that soybean lipoxygenase-1, which oxygenates polyenoic fatty acids at alkaline pH to the corresponding n - 6 hydroperoxy derivative, exhibits...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010700w

    authors: Ivanov I,Rathmann J,Myagkova G,Kuhn H

    更新日期:2001-08-28 00:00:00

  • Measuring RNA-Ligand Interactions with Microscale Thermophoresis.

    abstract::In recent years, there has been dramatic growth in the study of RNA. RNA has gone from being known as an intermediate in the central dogma of molecular biology to a molecule with a large diversity of structure and function that is involved in all aspects of biology. As new functions are rapidly discovered, it has beco...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01141

    authors: Moon MH,Hilimire TA,Sanders AM,Schneekloth JS Jr

    更新日期:2018-08-07 00:00:00

  • Study of the spin-spin interactions between the metal centers of Desulfovibrio gigas aldehyde oxidoreductase: identification of the reducible sites of the [2Fe-2S]1+,2+ clusters.

    abstract::The aldehyde oxidoreductase from Desulfovibrio gigas belongs to the family of molybdenum hydroxylases. Besides a molybdenum cofactor which constitutes their active site, these enzymes contain two [2Fe-2S](2+,1+) clusters which are believed to transfer the electrons provided by the substrate to an acceptor which is eit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0510025

    authors: More C,Asso M,Roger G,Guigliarelli B,Caldeira J,Moura J,Bertrand P

    更新日期:2005-08-30 00:00:00

  • Shortening the HIV-1 TAR RNA Bulge by a Single Nucleotide Preserves Motional Modes over a Broad Range of Time Scales.

    abstract::Helix-junction-helix (HJH) motifs are flexible building blocks of RNA architecture that help define the orientation and dynamics of helical domains. They are also frequently involved in adaptive recognition of proteins and small molecules and in the formation of tertiary contacts. Here, we use a battery of nuclear mag...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00285

    authors: Merriman DK,Xue Y,Yang S,Kimsey IJ,Shakya A,Clay M,Al-Hashimi HM

    更新日期:2016-08-16 00:00:00

  • Kinetic and modeling studies of S3-S3' subsites of HIV proteinases.

    abstract::Kinetic analysis and modeling studies of HIV-1 and HIV-2 proteinases were carried out using the oligopeptide substrate [formula: see text] and its analogs containing single amino acid substitutions in P3-P3' positions. The two proteinases acted similarly on the substrates except those having certain hydrophobic amino ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00135a008

    authors: Tözsér J,Weber IT,Gustchina A,Bláha I,Copeland TD,Louis JM,Oroszlan S

    更新日期:1992-05-26 00:00:00

  • Thymine dimer-induced structural changes to the DNA duplex examined with reactive probes (†).

    abstract::Despite significant progress in the past decade, questions still remain about the complete structural, dynamic, and thermodynamic effect of the cis-syn cyclobutane pyrimidine dimer lesion (hereafter called the thymine dimer) on double-stranded genomic DNA. We examined a 19-mer oligodeoxynucleotide duplex containing a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801417u

    authors: Rumora AE,Kolodziejczak KM,Malhowski Wagner A,Núñez ME

    更新日期:2008-12-09 00:00:00

  • Mode of interaction of aminooxy compounds with sheep liver serine hydroxymethyltransferase.

    abstract::The interaction of aminooxy compounds such as aminooxyacetate (AAA), L-canaline, and hydroxylamine with sheep liver serine hydroxymethyltransferase (EC 2.1.2.1) was studied by absorption spectra and stopped-flow spectrophotometry and compared with the unique feature of interaction of O-amino-D-serine (OADS) with the e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00451a010

    authors: Baskaran N,Prakash V,Savithri HS,Radhakrishnan AN,Appaji Rao N

    更新日期:1989-12-12 00:00:00

  • Interconversion of conformational isomers of light chains in the Mcg immunoglobulins.

    abstract::Previous crystallographic studies in this laboratory demonstrated that immunoglobulin light chains with the same amino acid sequence can have at least two and probably three or more conformations, depending on whether the second member of an interacting pair is a light or heavy chain. If a heavy chain is not available...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00594a022

    authors: Firca JR,Ely KR,Kremser P,Westholm FA,Dorrington KJ,Edmundson AB

    更新日期:1978-01-10 00:00:00

  • Purification and characterization of a transformation-dependent protein secreted by cultured murine fibroblasts.

    abstract::The major excreted protein (MEP) of transformed mouse fibroblasts has been purified, and monospecific antisera against it have been prepared. Synthesis and secretion of this protein have previously been shown to be stimulated by transformation or treatment with tumor-promoting phorbol esters, but its function is still...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00509a039

    authors: Gottesman MM,Cabral F

    更新日期:1981-03-17 00:00:00

  • Molecular interactions of N-RAP, a nebulin-related protein of striated muscle myotendon junctions and intercalated disks.

    abstract::N-RAP is a recently discovered muscle-specific protein that is concentrated at the myotendon junctions in skeletal muscle and at the intercalated disks in cardiac muscle. The C-terminal half of N-RAP contains a region with sequence homology to nebulin, while a LIM domain is found at its N-terminus. N-RAP is hypothesiz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982395t

    authors: Luo G,Herrera AH,Horowits R

    更新日期:1999-05-11 00:00:00

  • Understanding functional divergence in proteins by studying intragenomic homologues.

    abstract::Studies of intragenomic homologues in bacterial genomes can provide valuable insights into functional divergence. Three GTP cyclohydrolase II homologues in the Streptomyces coelicolor genome have been shown to catalyze two related but distinct reactions [Spoonamore, J. E., Dahlgran, A. L., Jacobsen, N. E., and Bandari...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi702263z

    authors: Spoonamore JE,Bandarian V

    更新日期:2008-02-26 00:00:00

  • A multifunctional protein possessing glycinamide ribonucleotide synthetase, glycinamide ribonucleotide transformylase, and aminoimidazole ribonucleotide synthetase activities in de novo purine biosynthesis.

    abstract::Three activities on the pathway of purine biosynthesis de novo in chicken liver, namely, glycinamide ribonucleotide synthetase, glycinamide ribonucleotide transformylase, and aminoimidazole ribonucleotide synthetase, have been found to reside on the same polypeptide chain. Three diverse purification schemes, utilizing...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00346a006

    authors: Daubner SC,Schrimsher JL,Schendel FJ,Young M,Henikoff S,Patterson D,Stubbe J,Benkovic SJ

    更新日期:1985-12-03 00:00:00

  • eIF2B Mechanisms of Action and Regulation: A Thermodynamic View.

    abstract::Eukaryotic translation initiation factor 2B (eIF2B) is the guanine nucleotide exchange factor of the GTPase eIF2, which brings the initiator Met-tRNAi to the ribosome in the form of the eIF2-GTP·Met-tRNAi ternary complex (TC). The activity of eIF2B is inhibited by phosphorylation of its substrate eIF2 by several stres...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00957

    authors: Bogorad AM,Lin KY,Marintchev A

    更新日期:2018-03-06 00:00:00

  • Photolabeling of cardiolipin binding subunits within bovine heart cytochrome c oxidase.

    abstract::Subunits located near the cardiolipin binding sites of bovine heart cytochrome c oxidase (CcO) were identified by photolabeling with arylazido-cardiolipin analogues and detecting labeled subunits by reversed-phase HPLC and HPLC-electrospray ionization mass spectrometry. Two arylazido-containing cardiolipin analogues w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050870z

    authors: Sedlák E,Panda M,Dale MP,Weintraub ST,Robinson NC

    更新日期:2006-01-24 00:00:00

  • Isoleucyl transfer ribonucleic acid synthetase. Steady-state kinetic analysis.

    abstract::A steady-state kinetic analysis was conducted of the overall aminoacylation reaction catalyzed by isoleucyl-tRNA synthetase. The patterns of Lineweaver-Burk plots obtained indicated that tRNA adds to the enzyme only after isoleucyl adenylate formation and pyrophosphate release. These kinetic patterns were consistent w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00580a018

    authors: Moe JG,Piszkiewicz D

    更新日期:1979-06-26 00:00:00

  • Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine.

    abstract::Purine riboswitches are RNA regulatory elements that control purine metabolism in response to intracellular concentrations of the purine ligands. Conformational changes of the guanine riboswitch aptamer domain induced by guanine binding lead to transcriptional regulation of genes involved in guanine biosynthesis. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9019912

    authors: Brenner MD,Scanlan MS,Nahas MK,Ha T,Silverman SK

    更新日期:2010-03-02 00:00:00

  • The Inflection Point Hypothesis: The Relationship between the Temperature Dependence of Enzyme-Catalyzed Reaction Rates and Microbial Growth Rates.

    abstract::The temperature dependence of biological rates at different scales (from individual enzymes to isolated organisms to ecosystem processes such as soil respiration and photosynthesis) is the subject of much historical and contemporary research. The precise relationship between the temperature dependence of enzyme rates ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00530

    authors: Prentice EJ,Hicks J,Ballerstedt H,Blank LM,Liáng LNL,Schipper LA,Arcus VL

    更新日期:2020-09-29 00:00:00

  • A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.

    abstract::The hepatitis delta virus (HDV) ribozyme and HDV-like ribozymes are self-cleaving RNAs found throughout all kingdoms of life. These RNAs fold into a double-nested pseudoknot structure and cleave RNA, yielding 2',3'-cyclic phosphate and 5'-hydroxyl termini. The active site nucleotide C75 has a pK(a) shifted >2 pH units...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100670p

    authors: Chen JH,Yajima R,Chadalavada DM,Chase E,Bevilacqua PC,Golden BL

    更新日期:2010-08-10 00:00:00

  • Calpain inhibition by alpha-ketoamide and cyclic hemiacetal inhibitors revealed by X-ray crystallography.

    abstract::Calpains are intracellular calcium-activated cysteine proteases whose unregulated proteolysis following the loss of calcium homeostasis can lead to acute degeneration during ischemic episodes and trauma, as well as Alzheimer's disease and cataract formation. The determination of the crystal structure of the proteolyti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060425j

    authors: Cuerrier D,Moldoveanu T,Inoue J,Davies PL,Campbell RL

    更新日期:2006-06-20 00:00:00

  • Structural insights into the prereaction state of pyruvate decarboxylase from Zymomonas mobilis .

    abstract::Pyruvate decarboxylase (PDC) uses thiamine diphosphate as an essential cofactor to catalyze the formation of acetaldehyde on the pathway of ethanol synthesis. Here we report the crystallographic image of a prereaction intermediate of a bacterial pyruvate decarboxylase prepared by cocrystallizing the enzyme with pyruva...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901864j

    authors: Pei XY,Erixon KM,Luisi BF,Leeper FJ

    更新日期:2010-03-02 00:00:00

  • Revealing Conformational Transitions in G-Protein-Coupled Receptor Rhodopsin upon Phosphorylation.

    abstract::G-protein-coupled receptors (GPCRs) have evolved as highly specialized cellular machinery that can dictate biological outcomes in response to diverse stimuli. Specifically, they induce multiple pathway responses upon structural perturbations induced at local protein sites. GPCRs utilize a concurrent strategy involving...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00884

    authors: Jatana N,Aswin SK,Rathore S,Thukral L

    更新日期:2020-01-28 00:00:00

  • Structure-activity relationships for the interaction of bovine pancreatic trypsin inhibitor with an intracellular site on a large conductance Ca(2+)-activated K(+) channel.

    abstract::Large conductance Ca(2+)-activated K(+) channels (BK(Ca)) contain an intracellular binding site for bovine pancreatic trypsin inhibitor (BPTI), a well-known inhibitor of various serine proteinase (SerP) enzymes. To investigate the structural basis of this interaction, we examined the activity of 11 BPTI mutants using ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992140v

    authors: Favre I,Moss GW,Goldenberg DP,Otlewski J,Moczydlowski E

    更新日期:2000-02-29 00:00:00

  • Influence of the calcium-induced gel phase on the behavior of small molecules in phosphatidylserine and phosphatidylserine-phosphatidylcholine multilamellar vesicles.

    abstract::The behavior of fluorescent and spin-label probes is examined in several fluid and gel phospholipid phases, with particular focus on the Ca2+-induced gel phase in phosphatidylserine (PS). These probes have behavior characteristic of the type of probe and of the type of lipid environment. Anthroyloxy- and doxyl-labeled...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00380a039

    authors: Florine KI,Feigenson GW

    更新日期:1987-03-24 00:00:00

  • L-cysteine desulfidase: an [4Fe-4S] enzyme isolated from Methanocaldococcus jannaschii that catalyzes the breakdown of L-cysteine into pyruvate, ammonia, and sulfide.

    abstract::A [4Fe-4S] enzyme that decomposes L-cysteine to hydrogen sulfide, ammonia, and pyruvate has been isolated and characterized from Methanocaldococcus jannaschii. The sequence of the isolated enzyme demonstrated that the protein was the product of the M. jannaschii MJ1025 gene. The protein product of this gene was recomb...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0484769

    authors: Tchong SI,Xu H,White RH

    更新日期:2005-02-08 00:00:00

  • Isotope trapping and kinetic isotope effect studies of rat liver alpha-(2-->6)-sialyltransferase.

    abstract::A mechanistic study of rat liver alpha-(2-->6) sialyltransferase (ST) is presented that includes isotope trapping experiments and kinetic isotope effects on V/K for the ST-catalyzed reaction of isotopically labeled CMP-N-acetylneuraminate and N-acetyllactosamine. The isotope trapping experiments confirmed that the kin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971624t

    authors: Bruner M,Horenstein BA

    更新日期:1998-01-06 00:00:00

  • Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription.

    abstract::Abortive transcription initiation can be rate-limiting for promoter escape and therefore represents a barrier to productive gene expression. The mechanism for abortive initiation is unknown, but the amount of abortive transcript is known to vary with the composition of the initial transcribed sequence (ITS). Here, we ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00272

    authors: Skancke J,Bar N,Kuiper M,Hsu LM

    更新日期:2015-07-21 00:00:00

  • The metastasis-associated extracellular matrix protein osteopontin forms transient structure in ligand interaction sites.

    abstract::Osteopontin (OPN) is an acidic hydrophilic glycophosphoprotein that was first identified as a major sialoprotein in bones. It functions as a cell attachment protein displaying a RGD cell adhesion sequence and as a cytokine that signals through integrin and CD44 cell adhesion molecules. OPN is also implicated in human ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200291e

    authors: Platzer G,Schedlbauer A,Chemelli A,Ozdowy P,Coudevylle N,Auer R,Kontaxis G,Hartl M,Miles AJ,Wallace BA,Glatter O,Bister K,Konrat R

    更新日期:2011-07-12 00:00:00