Phase-resolved spectral measurements with several two tryptophan containing proteins.

Abstract:

:We have used frequency domain fluorescence techniques to resolve the component emission spectra for several two tryptophan containing proteins (e.g., horse liver alcohol dehydrogenase, sperm whale apomyoglobin, yeast 3-phosphoglycerate kinase, apoazurin from Alcaligenes denitricans). We have first performed multifrequency phase/modulation measurements and have found the fluorescence of each of these proteins to be described by a double exponential. Then, using phase-sensitive detection and the algorithm of Gratton and Jameson [Gratton, E., & Jameson, D. M. (1985) Anal. Chem. 57, 1694-1697], we have determined the emission spectrum associated with each decay time for these proteins. We have compared these phase-resolved spectra with the fractional contributions of the component fluorophores determined by selective solute quenching experiments. Reasonably good agreement is seen in most cases, which argues that the individual Trp residues emit independently. In the case of apoazurin, however, a negative amplitude is seen for the phase-resolved spectrum of the short-lifetime component. This pattern is consistent with the occurrence of energy transfer from the internal Trp residue to the surface Trp of this protein. We also present multifrequency lifetime measurements, phase-resolved spectra, and solute quenching data for a few protein-ligand complexes, to illustrate the utility of this approach for the study of changes in the fluorescence of proteins.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Eftink MR,Wasylewski Z,Ghiron CA

doi

10.1021/bi00399a047

subject

Has Abstract

pub_date

1987-12-15 00:00:00

pages

8338-46

issue

25

eissn

0006-2960

issn

1520-4995

journal_volume

26

pub_type

杂志文章
  • Characterization of metal ion activation and inhibition of CTP synthetase.

    abstract::A reinvestigation of the metal ion activation and specificity of CTP synthetase was begun in order to separate effects due to binding of free metal ions and binding of nucleotide-complexed ions. Apo-CTP synthetase was prepared by dialysis against 5 mM EDTA. Analysis of apo-enzyme by atomic absorption spectroscopy reve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00065a032

    authors: Robertson JG,Villafranca JJ

    更新日期:1993-04-13 00:00:00

  • NG-methyl-L-arginine functions as an alternate substrate and mechanism-based inhibitor of nitric oxide synthase.

    abstract::NG-Methyl-L-arginine (L-NMA) is one of the most commonly used inhibitors of the nitric oxide synthases (NOS). Results reported here demonstrate that L-NMA is an alternate substrate and a mechanism-based inhibitor of the inducible NOS purified from murine macrophages. The irreversible inhibition displays pseudo-first-o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00088a020

    authors: Olken NM,Marletta MA

    更新日期:1993-09-21 00:00:00

  • Argonaute Facilitates the Lateral Diffusion of the Guide along Its Target and Prevents the Guide from Being Pushed Away by the Ribosome.

    abstract::Argonaute (AGO) proteins play central roles in nucleic acid-guided interference that regulates gene expression and defend against foreign genetic elements in all life. Although much progress has been made with respect to the function of argonaute proteins in target recognition and cleavage, the detailed mechanism of t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00213

    authors: Song G,Chen H,Sheng G,Wang Y,Lou J

    更新日期:2018-04-17 00:00:00

  • Conformational basis for substrate recruitment in protein tyrosine phosphatase 10D.

    abstract::The coordinated activity of protein tyrosine phosphatases (PTPs) is crucial for the initiation, modulation, and termination of diverse cellular processes. The catalytic activity of this protein depends on a nucleophilic cysteine at the active site that mediates the hydrolysis of the incoming phosphotyrosine substrate....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201092q

    authors: Madan LL,Gopal B

    更新日期:2011-11-22 00:00:00

  • Novel benzimidazole inhibitors bind to a unique site in the kinesin spindle protein motor domain.

    abstract::Affinity selection-mass spectrometry (AS-MS) screening of kinesin spindle protein (KSP) followed by enzyme inhibition studies and temperature-dependent circular dichroism (TdCD) characterization was utilized to identify a series of benzimidazole compounds. This series also binds in the presence of Ispinesib, a known a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1005283

    authors: Sheth PR,Shipps GW Jr,Seghezzi W,Smith CK,Chuang CC,Sanden D,Basso AD,Vilenchik L,Gray K,Annis DA,Nickbarg E,Ma Y,Lahue B,Herbst R,Le HV

    更新日期:2010-09-28 00:00:00

  • Binding of polyaminocarboxylate chelators to the active-site copper inhibits the GSNO-reductase activity but not the superoxide dismutase activity of Cu,Zn-superoxide dismutase.

    abstract::In addition to its superoxide dismutase (SOD) activity, Cu,Zn-superoxide dismutase (CuZnSOD) catalyzes the reductive decomposition of S-nitroso-L-glutathione (GSNO) in the presence of thiols such as L-glutathione (GSH). The GSNO-reductase activity but not the superoxide dismutase (SOD) activity of CuZnSOD is inhibited...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061077o

    authors: Ye M,English AM

    更新日期:2006-10-24 00:00:00

  • Nitrogenase reactivity: cyanide as substrate and inhibitor.

    abstract::We have examined the reduction of cyanide by using the purified component proteins of nitrogenase (Av1 and Av2). The previously reported self-inhibition phenomenon was found to be an artifact. One of the two species present in cyanide solutions, CN-, was shown to be a potent reversible inhibitor (Ki = 27 microM) of to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00261a031

    authors: Li J,Burgess BK,Corbin JL

    更新日期:1982-08-31 00:00:00

  • Mechanism of adenylate kinase. Structural and functional roles of the conserved arginine-97 and arginine-132.

    abstract::The structural and functional roles of two conserved active site residues, Arg-97 and Arg-132, in chicken muscle adenylate kinase (AK) were evaluated by site-directed mutagenesis in conjunction with one- and two-dimensional proton nuclear magnetic resonance (NMR), kinetics, and guanidine hydrochloride-induced denatura...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00142a022

    authors: Dahnke T,Shi Z,Yan H,Jiang RT,Tsai MD

    更新日期:1992-07-14 00:00:00

  • Denaturation of type I collagen fibrils is an endothermic process accompanied by a noticeable change in the partial heat capacity.

    abstract::Thermal transitions of type I collagen fibrils were investigated by differential scanning calorimetry and spectrophotometry of turbidity within a wide range of external conditions. The advanced microcalorimeter allowed us to carry out the measurements at low concentrations of collagen (0.15-0.3 mg/mL). At these concen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980360n

    authors: Tiktopulo EI,Kajava AV

    更新日期:1998-06-02 00:00:00

  • Folding domains as functional tools in allosteric systems: a heme-dependent domain in hemoglobin beta subunits.

    abstract::We have investigated the denaturation by guanidine hydrochloride (Gdn X HCl), temperature, and pH of hemoglobin beta subunits and of the peptides beta (1-146), beta (56-146), and beta (1-55). The last peptide was insensitive to all of the three agents. In the other polypeptides denaturation by Gdn X HCl and temperatur...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00267a024

    authors: Franchi D,Fronticelli C,Bucci E

    更新日期:1982-11-23 00:00:00

  • G-1:C73 recognition by an arginine cluster in the active site of Escherichia coli histidyl-tRNA synthetase.

    abstract::Aminoacylation of a transfer RNA (tRNA) by its cognate aminoacyl-tRNA synthetase relies upon the recognition of specific nucleotides as well as conformational features within the tRNA by the synthetase. In Escherichia coli, the aminoacylation of tRNA(His) by histidyl-tRNA synthetase (HisRS) is highly dependent upon th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035708f

    authors: Connolly SA,Rosen AE,Musier-Forsyth K,Francklyn CS

    更新日期:2004-02-03 00:00:00

  • The Asp285 variant of DNA polymerase beta extends mispaired primer termini via increased nucleotide binding.

    abstract::Endogenous DNA damage occurs at a rate of at least 20,000 lesions per cell per day. Base excision repair (BER) is a key pathway for maintaining genome stability. Several pol beta variants were identified as conferring resistance to 3'-azido-3'-deoxythymidine (AZT) in Escherichia coli (Kosa et al. (1999) J. Biol. Chem....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi702104y

    authors: Murphy DL,Kosa J,Jaeger J,Sweasy JB

    更新日期:2008-08-05 00:00:00

  • Conformational heterogeneity at position U37 of an all-RNA hairpin ribozyme with implications for metal binding and the catalytic structure of the S-turn.

    abstract::The hairpin ribozyme is an RNA enzyme that performs site-specific phosphodiester bond cleavage between nucleotides A-1 and G+1 within its cognate substrate. Previous functional studies revealed that the minimal hairpin ribozyme exhibited "gain-of-function" cleavage properties resulting from U39C or U39 to propyl linke...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051550i

    authors: Alam S,Grum-Tokars V,Krucinska J,Kundracik ML,Wedekind JE

    更新日期:2005-11-08 00:00:00

  • Glycosphingolipids: 2H NMR study of the influence of carbohydrate headgroup structure on ceramide acyl chain behavior in glycolipid-phospholipid bilayers.

    abstract::Galactosyl- and glucosylceramide, globoside, and dihydrolactosylceramide, bearing [2,2-2H2]stearic acid, have been studied at a concentration of 10 mol% in bilayers of dimyristoylphosphatidylcholine by 2H NMR. The quadrupolar splitting delta vQ of the C2 deuterons were measured at several temperatures in the range of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00232a019

    authors: Fenske DB,Hamilton K,Jarrell HC,Florio E,Barber KR,Grant CW

    更新日期:1991-05-07 00:00:00

  • Requirement of a unique Ca(2+)-binding loop for folding of Tk-subtilisin from a hyperthermophilic archaeon.

    abstract::Tk-subtilisin from the hyperthermophiolic archaeon Thermococcus kodakaraensis matures from Pro-Tk-subtilisin upon autoprocessing and degradation of Tk-propeptide [Tanaka, S., Saito, K., Chon, H., Matsumura, H., Koga, Y., Takano, K., and Kanaya, S. (2007) J. Biol. Chem. 282, 8246-8255]. It requires Ca(2+) for folding a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901334b

    authors: Takeuchi Y,Tanaka S,Matsumura H,Koga Y,Takano K,Kanaya S

    更新日期:2009-11-10 00:00:00

  • ABC transporters and immunity: mechanism of self-defense.

    abstract::The transporter associated with antigen processing (TAP) is a prototype of an asymmetric ATP-binding cassette (ABC) transporter, which uses ATP binding and hydrolysis to translocate peptides from the cytosol to the lumen of the endoplasmic reticulum (ER). Here, we review molecular details of peptide binding and ATP bi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi300128f

    authors: Hinz A,Tampé R

    更新日期:2012-06-26 00:00:00

  • Infrared spectroscopy of polynucleotides in the carbonyl region in H2O solution: A.U systems.

    abstract::Strong absorbance of water at 1645 cm-1 has previously prevented dependable observation of infrared spectra of H2O solutions in the carbonyl region. We have obtained reliable spectra in pure water and in alcohol-water mixtures in this region and used them to study A.U polynucleotide interaction. Spectra in pure water ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00607a034

    authors: Miles HT,Frazier J

    更新日期:1978-07-11 00:00:00

  • Regulation of PutA-membrane associations by flavin adenine dinucleotide reduction.

    abstract::Proline utilization A (PutA) from Escherichia coli is a multifunctional flavoprotein that is both a transcriptional repressor of the proline utilization (put) genes and a membrane-associated enzyme which catalyzes the 4-electron oxidation of proline to glutamate. Previously, proline was shown to induce PutA-membrane b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048596g

    authors: Zhang W,Zhou Y,Becker DF

    更新日期:2004-10-19 00:00:00

  • Kinetic mechanism of Escherichia coli asparagine synthetase B.

    abstract::Escherichia coli asparagine synthetase B (AS-B) catalyzes the synthesis of asparagine from aspartate, glutamine, and ATP. A combination of kinetic, isotopic-labeling, and stoichiometry studies have been performed to define the nature of nitrogen transfer mediated by AS-B. The results of initial rate studies were consi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981058h

    authors: Boehlein SK,Stewart JD,Walworth ES,Thirumoorthy R,Richards NG,Schuster SM

    更新日期:1998-09-22 00:00:00

  • Preferred heme binding sites of histidine-rich glycoprotein.

    abstract::The heme binding sites of rabbit histidine-rich glycoprotein (HRG), 94 kDa, were studied with rose bengal (RB), a fluorescein derivative that associates with histidine residues. Difference absorbance spectra indicate that HRG binds RB at two thermodynamically preferred sites (Kd approximately 2 microM) that are spectr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00342a034

    authors: Burch MK,Morgan WT

    更新日期:1985-10-08 00:00:00

  • Divergence of structure and function in the haloacid dehalogenase enzyme superfamily: Bacteroides thetaiotaomicron BT2127 is an inorganic pyrophosphatase.

    abstract::The explosion of protein sequence information requires that current strategies for function assignment evolve to complement experimental approaches with computationally based function prediction. This necessitates the development of strategies based on the identification of sequence markers in the form of specificity ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201181q

    authors: Huang H,Patskovsky Y,Toro R,Farelli JD,Pandya C,Almo SC,Allen KN,Dunaway-Mariano D

    更新日期:2011-10-18 00:00:00

  • In vitro activation of purified human heat shock factor by heat.

    abstract::A major regulatory step in the heat-induced transcription of heat shock protein (hsp) genes in eukaryotes is the activation of heat shock factor (HSF). In metazoans and Schizosaccharomyces pombe, HSF is present in unstressed cells but is unable to bind to its target DNA sequence element, the heat shock element (HSE). ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00006a011

    authors: Larson JS,Schuetz TJ,Kingston RE

    更新日期:1995-02-14 00:00:00

  • Substrate recognition determinants for rhodopsin kinase: studies with synthetic peptides, polyanions, and polycations.

    abstract::Rhodopsin kinase phosphorylates serine- and threonine-containing peptides from bovine rhodopsin's carboxyl-terminal sequence. Km's for the peptides decrease as the length of the peptide is increased over the range 12-31 amino acids, reaching 1.7 mM for peptide 318-348 from the rhodopsin sequence. The Km for phosphoryl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00448a013

    authors: Palczewski K,Arendt A,McDowell JH,Hargrave PA

    更新日期:1989-10-31 00:00:00

  • Characterization of a genomic and cDNA clone coding for the thioesterase domain and 3' noncoding region of the chicken liver fatty acid synthase gene.

    abstract::The fatty acid synthase (FAS) of animal tissue is a dimer of two identical subunits, each with a Mr of 260,000. The subunit is a single multifunctional protein having seven catalytic activities and a site for binding of the prosthetic group 4'-phosphopantetheine. The mRNA coding for the subunit has an estimated size o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00420a029

    authors: Kasturi R,Chirala S,Pazirandeh M,Wakil SJ

    更新日期:1988-10-04 00:00:00

  • "Partly folded" state, a new equilibrium state of protein molecules: four-state guanidinium chloride-induced unfolding of beta-lactamase at low temperature.

    abstract::Guanidinium chloride- (GdmCl-) induced unfolding of beta-lactamase has been investigated by a combination of size-exclusion chromatography (SEC-FPLC) and usual optical methods. It has been shown that at low temperatures this protein unfolds through two equilibrium intermediates. The first of these intermediates is the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00176a006

    authors: Uversky VN,Ptitsyn OB

    更新日期:1994-03-15 00:00:00

  • Identification of the protein 4.1 binding site to phosphatidylserine vesicles.

    abstract::Previous studies have shown that protein 4.1 is a multifunctional protein that binds to spectrin, actin, glycophorins, the anion channel protein, and phosphatidylserine (PS). In this report, we have characterized the binding of protein 4.1 and its major proteolytic fragments to phospholipid vesicles. Pure 125I-labeled...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00402a018

    authors: Cohen AM,Liu SC,Lawler J,Derick L,Palek J

    更新日期:1988-01-26 00:00:00

  • Chromatographic behavior of cyclic AMP dependent protein kinase and its subunits from Dictyostelium discoideum.

    abstract::An adenosine cyclic 3',5'-monophosphate (cAMP) dependent protein kinase has recently been shown to exist in Dictyostelium discoideum and to be developmentally regulated. In this report we have followed the chromatographic behavior of both the holoenzyme and its subunits. A cAMP-dependent holoenzyme could be obtained f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00315a015

    authors: Rutherford CL,Vaughan RL,Cloutier MJ,Ferris DK,Brickey DA

    更新日期:1984-09-25 00:00:00

  • Characterization of a small metal binding protein from Nitrosomonas europaea.

    abstract::A small metal-binding protein (SmbP) with no known similarity to other proteins in current databases was isolated and characterized from the periplasm of Nitrosomonas europaea. The primary structure of this small (9.9 kDa) monomeric protein is characterized by a series of 10 repeats of a seven amino acid motif and an ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049318k

    authors: Barney BM,LoBrutto R,Francisco WA

    更新日期:2004-09-07 00:00:00

  • A LIN28-dependent structural change in pre-let-7g directly inhibits dicer processing.

    abstract::Several recent studies have provided evidence that LIN28, a cytoplasmic RNA-binding protein, inhibits the biogenesis of members of the let-7 microRNA family at the Dicer step in both mammals and Caenorhabditis elegans. However, the precise mechanism of inhibition is still poorly understood. Here we report on an in vit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200851d

    authors: Lightfoot HL,Bugaut A,Armisen J,Lehrbach NJ,Miska EA,Balasubramanian S

    更新日期:2011-09-06 00:00:00

  • Ciliary dynein conformational changes as evidenced by the extrinsic fluorescent probe 8-anilino-1-naphthalenesulfonate.

    abstract::The binding of 8-anilino-1-naphthalenesulfonate (ANS) to ciliary dynein ATPase leads to a marked increase in the dye's fluorescence intensity, accompanied by a blue shift in the observed fluorescence emission maximum. We found that dynein has 37 +/- 3 ANS binding sites and that experimentally applied ANS concentration...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00347a012

    authors: Saucier AC,Mariotti S,Anderson SA,Purich DL

    更新日期:1985-12-17 00:00:00