Proteins that interact with bacterial small RNA regulators.

Abstract:

:Small regulatory RNAs have been identified in a wide range of organisms, where they modify mRNA stability, translation or protein function. Small RNA regulators (sRNAs) either pair with mRNA targets or modify protein activities. Here we discuss current knowledge of the various proteins that interact with RNA regulators and review the physiologic implications of sRNA-protein complexes in DNA, RNA and protein metabolism, as well as in RNA and protein quality control in prokaryotes. Proteins that interact with the sRNAs can possess catalytic activity, induce conformational changes of the sRNA, or be sequestered by the sRNA to prevent the action of the protein.

journal_name

FEMS Microbiol Rev

authors

Pichon C,Felden B

doi

10.1111/j.1574-6976.2007.00079.x

subject

Has Abstract

pub_date

2007-09-01 00:00:00

pages

614-25

issue

5

eissn

0168-6445

issn

1574-6976

pii

FMR079

journal_volume

31

pub_type

杂志文章,评审
  • Regulation of gene expression during swarmer cell differentiation in Proteus mirabilis.

    abstract::The gram-negative bacterium Proteus mirabilis can exist in either of two cell types, a vegetative cell characterized as a short rod and a highly elongated and hyperflagellated swarmer cell. This differentiation is triggered by growth on solid surfaces and multiple inputs are sensed by the cell to initiate the differen...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2010.00229.x

    authors: Morgenstein RM,Szostek B,Rather PN

    更新日期:2010-09-01 00:00:00

  • Repetitive sequences in malaria parasite proteins.

    abstract::Five species of parasite cause malaria in humans with the most severe disease caused by Plasmodium falciparum. Many of the proteins encoded in the P. falciparum genome are unusually enriched in repetitive low-complexity sequences containing a limited repertoire of amino acids. These repetitive sequences expand and con...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fux046

    authors: Davies HM,Nofal SD,McLaughlin EJ,Osborne AR

    更新日期:2017-11-01 00:00:00

  • Eubacterial sigma-factors.

    abstract::The initiation of transcription is the most important step for gene regulation in eubacteria. To initiate transcription, RNA polymerase has to associate with a small protein, known as a sigma-factor. The sigma-factor directs RNA polymerase to a specific class of promoter sequences. Most bacterial species synthesize se...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1998.tb00364.x

    authors: Wösten MM

    更新日期:1998-09-01 00:00:00

  • The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus.

    abstract::More than a century ago, the term 'virus' was introduced to describe infectious agents that are invisible by light microscopy and capable of passing through sterilizing filters. In addition to their extremely small size, most viruses have minimal genomes and gene contents, and rely almost entirely on host cell-encoded...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv037

    authors: Abergel C,Legendre M,Claverie JM

    更新日期:2015-11-01 00:00:00

  • Microbes and membrane biology.

    abstract::General principles of membrane function have been elucidated by the study of lactic acid bacteria. In this review, the operation and function of ion pumps, secondary transport systems and solute ATPases will be discussed. Despite their differences in kinetics and mechanisms between the transport systems, structural si...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6968.1990.tb04881.x

    authors: Maloney PC

    更新日期:1990-09-01 00:00:00

  • Quorum-sensing in Gram-negative bacteria.

    abstract::It has become increasingly and widely recognised that bacteria do not exist as solitary cells, but are colonial organisms that exploit elaborate systems of intercellular communication to facilitate their adaptation to changing environmental conditions. The languages by which bacteria communicate take the form of chemi...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2001.tb00583.x

    authors: Whitehead NA,Barnard AM,Slater H,Simpson NJ,Salmond GP

    更新日期:2001-08-01 00:00:00

  • Multi-species biofilms: living with friendly neighbors.

    abstract::Our knowledge regarding the nature and development of microbial biofilms has grown significantly since the first report of these communities by Antonie van Leeuwenhoek in the late 1600s. Nevertheless, most biofilm studies examine mono-species cultures, whereas nearly all biofilm communities in nature comprise a variet...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2012.00325.x

    authors: Elias S,Banin E

    更新日期:2012-09-01 00:00:00

  • Metal limitation and toxicity at the interface between host and pathogen.

    abstract::Metals are required cofactors for numerous fundamental processes that are essential to both pathogen and host. They are coordinated in enzymes responsible for DNA replication and transcription, relief from oxidative stress, and cellular respiration. However, excess transition metals can be toxic due to their ability t...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/1574-6976.12087

    authors: Becker KW,Skaar EP

    更新日期:2014-11-01 00:00:00

  • Phages of the marine cyanobacterial picophytoplankton.

    abstract::Cyanobacteria of the genera Synechococcus and Prochlorococcus dominate the prokaryotic component of the picophytoplankton in the oceans. It is still less than 10 years since the discovery of phages that infect marine Synechococcus and the beginning of the characterisation of these phages and assessment of their ecolog...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/S0168-6445(03)00016-0

    authors: Mann NH

    更新日期:2003-04-01 00:00:00

  • AT-rich region and repeated sequences - the essential elements of replication origins of bacterial replicons.

    abstract::Repeated sequences are commonly present in the sites for DNA replication initiation in bacterial, archaeal, and eukaryotic replicons. Those motifs are usually the binding places for replication initiation proteins or replication regulatory factors. In prokaryotic replication origins, the most abundant repeated sequenc...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2011.00300.x

    authors: Rajewska M,Wegrzyn K,Konieczny I

    更新日期:2012-03-01 00:00:00

  • ELISA in serodiagnosis of HCV infection.

    abstract::A high level of anti-HCV is generally associated with viral replication and the number of recognized epitopes appears to be correlated with the viral charge. Nevertheless, the absence of detectable antibodies in about 60% of patients during the acute phase of the disease and in 10% of chronically infected (generally i...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1111/j.1574-6976.1994.tb00092.x

    authors: Pillot J,Rioche M,Lazizi Y

    更新日期:1994-07-01 00:00:00

  • Engineering a peptide epitope display system on filamentous bacteriophage.

    abstract::The genome of bacteriophage fd has been engineered to allow foreign amino acid sequences to be displayed in the exposed N-terminal segment of the major coat protein in the virus particle: small peptides can be encoded directly; larger peptides are encoded in hybrid virions, in which wild-type coat protein subunits are...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1995.tb00184.x

    authors: Perham RN,Terry TD,Willis AE,Greenwood J,di Marzo Veronese F,Appella E

    更新日期:1995-08-01 00:00:00

  • From hairballs to hypotheses-biological insights from microbial networks.

    abstract::Microbial networks are an increasingly popular tool to investigate microbial community structure, as they integrate multiple types of information and may represent systems-level behaviour. Interpreting these networks is not straightforward, and the biological implications of network properties are unclear. Analysis of...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuy030

    authors: Röttjers L,Faust K

    更新日期:2018-11-01 00:00:00

  • Biotransformation and biodegradation of N-substituted aromatics in methanogenic granular sludge.

    abstract::N-Substituted aromatic compounds are environmental contaminants associated with the production and use of dyes, explosives, pesticides and pharmaceuticals. In this article, we examine the potential of anaerobic granular sludge from anaerobic treatment systems towards the detoxification, transformation, and mineralizat...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1111/j.1574-6976.1997.tb00335.x

    authors: Razo-Flores E,Donlon B,Lettinga G,Field JA

    更新日期:1997-07-01 00:00:00

  • Class IIa bacteriocins: biosynthesis, structure and activity.

    abstract::In the last decade, a variety of ribosomally synthesized antimicrobial peptides or bacteriocins produced by lactic acid bacteria have been identified and characterized. As a result of these studies, insight has been gained into fundamental aspects of biology and biochemistry such as producer self protection, membrane-...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2000.tb00534.x

    authors: Ennahar S,Sashihara T,Sonomoto K,Ishizaki A

    更新日期:2000-01-01 00:00:00

  • Synthetic chromosomes.

    abstract::What a living organism looks like and how it works and what are its components-all this is encoded on DNA, the genetic blueprint. Consequently, the way to change an organism is to change its genetic information. Since the first pieces of recombinant DNA have been used to transform cells in the 1970s, this approach has...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv030

    authors: Schindler D,Waldminghaus T

    更新日期:2015-11-01 00:00:00

  • P(II) signal transduction proteins: nitrogen regulation and beyond.

    abstract::The P(II) proteins are one of the most widely distributed families of signal transduction proteins in nature. They are pivotal players in the control of nitrogen metabolism in bacteria and archaea, and are also found in the plastids of plants. Quite remarkably, P(II) proteins control the activities of a diverse rang...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2012.00351.x

    authors: Huergo LF,Chandra G,Merrick M

    更新日期:2013-03-01 00:00:00

  • Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed.

    abstract::The accurate synthesis of proteins, dictated by the corresponding nucleotide sequence encoded in mRNA, is essential for cell growth and survival. Central to this process are the aminoacyl-tRNA synthetases (aaRSs), which provide amino acid substrates for the growing polypeptide chain in the form of aminoacyl-tRNAs. The...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00119.x

    authors: Hausmann CD,Ibba M

    更新日期:2008-07-01 00:00:00

  • Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network.

    abstract::The genus Corynebacterium belongs to the taxonomic class Actinobacteria representing the high G+C branch of gram-positive bacteria. Among the most prominent members of this genus is Corynebacterium glutamicum, which is used by the biotechnological industry for the fermentative production of l-amino acids. Because of i...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2010.00228.x

    authors: Schröder J,Tauch A

    更新日期:2010-09-01 00:00:00

  • From Nano to Micro: using nanotechnology to combat microorganisms and their multidrug resistance.

    abstract::The spread of antibiotic resistance and increasing prevalence of biofilm-associated infections is driving demand for new means to treat bacterial infection. Nanotechnology provides an innovative platform for addressing this challenge, with potential to manage even infections involving multidrug-resistant (MDR) bacteri...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fux003

    authors: Natan M,Banin E

    更新日期:2017-05-01 00:00:00

  • Gene conversion and concerted evolution in bacterial genomes.

    abstract::Gene conversion is defined as the non-reciprocal transfer of information between homologous sequences. Despite methodological problems to establish non-reciprocity, gene conversion has been demonstrated in a wide variety of bacteria. Besides examples of high-frequency reversion of mutations in repeated genes, gene con...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/j.femsre.2004.10.004

    authors: Santoyo G,Romero D

    更新日期:2005-04-01 00:00:00

  • Phagocyte subsets and lymphocyte clonal deletion behind ineffective immune response to Staphylococcus aureus.

    abstract::Lack of known mechanisms of protection against Staphylococcus aureus in humans is hindering development of efficacious vaccines. Preclinical as well as clinical data suggest that antibodies play an important role against S. aureus. For instance, certain hypogammaglobulinaemic patients are at increased risk of staphylo...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv024

    authors: Pozzi C,Lofano G,Mancini F,Soldaini E,Speziale P,De Gregorio E,Rappuoli R,Bertholet S,Grandi G,Bagnoli F

    更新日期:2015-09-01 00:00:00

  • Archaeal cell surface biogenesis.

    abstract::Cell surfaces are critical for diverse functions across all domains of life, from cell-cell communication and nutrient uptake to cell stability and surface attachment. While certain aspects of the mechanisms supporting the biosynthesis of the archaeal cell surface are unique, likely due to important differences in cel...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1093/femsre/fuy027

    authors: Pohlschroder M,Pfeiffer F,Schulze S,Abdul Halim MF

    更新日期:2018-09-01 00:00:00

  • The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems.

    abstract::Small cells dominate photosynthetic biomass and primary production in many marine ecosystems. Traditionally, picoplankton refers to cells < or =2 microm. Here we extend the size range of the organisms considered to 3 microm, a threshold often used operationally in field studies. While the prokaryotic component of pico...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00121.x

    authors: Vaulot D,Eikrem W,Viprey M,Moreau H

    更新日期:2008-08-01 00:00:00

  • Microbial arsenic: from geocycles to genes and enzymes.

    abstract::Arsenic compounds have been abundant at near toxic levels in the environment since the origin of life. In response, microbes have evolved mechanisms for arsenic resistance and enzymes that oxidize As(III) to As(V) or reduce As(V) to As(III). Formation and degradation of organoarsenicals, for example methylarsenic comp...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2002.tb00617.x

    authors: Mukhopadhyay R,Rosen BP,Phung LT,Silver S

    更新日期:2002-08-01 00:00:00

  • Regulation of nitrogen metabolism, starch utilisation and the beta-hbd-adh1 gene cluster in Clostridium acetobutylicum.

    abstract::The successful genetic manipulation of Clostridium acetobutylicum for the increased production of solvents will depend on an understanding of gene structure and regulation in the bacterium. The glutamine synthetase (glnA) gene is regulated by antisense RNA, transcribed from a downstream promoter, in the opposite direc...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1995.tb00213.x

    authors: Woods DR,Reid SJ

    更新日期:1995-10-01 00:00:00

  • Structural and functional aspects of peroxisomal membranes in yeasts.

    abstract::The peroxisomal membrane compartmentalizes specific metabolic functions in the intermediary metabolism of various aerobic eukarya. In yeast, peroxisomal membranes are typified by their small width (+/- 7-8 nm) and absence of large integral membrane proteins in freeze-etch replicas. They show a unique polypeptide profi...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1993.tb00002.x

    authors: Sulter GJ,Harder W,Veenhuis M

    更新日期:1993-08-01 00:00:00

  • Escherichia coli O157:H7 colonization in small domestic ruminants.

    abstract::Enterohaemorrhagic Escherichia coli O157:H7 was first implicated in human disease in the early 1980s, with ruminants cited as the primary reservoirs. Preliminary studies indicated cattle to be the sole source of E. coli O157:H7 outbreaks in humans; however, further epidemiological studies soon demonstrated that E. col...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00138.x

    authors: La Ragione RM,Best A,Woodward MJ,Wales AD

    更新日期:2009-03-01 00:00:00

  • Side effects of antibiotics on genetic variability.

    abstract::In recent years, there has been accumulating evidence that antibiotics, besides their antimicrobial action, potentially have a number of undesired side effects that can, at least in some cases, promote genetic variability of bacteria. In addition to resistant variants, antibiotics have also been shown to select mutato...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2009.00165.x

    authors: Couce A,Blázquez J

    更新日期:2009-05-01 00:00:00

  • The long and winding road from the research laboratory to industrial applications of lactic acid bacteria.

    abstract::Research innovations are constantly occurring in universities, research institutions and industrial research laboratories. These are reported in the scientific literature and presented to the scientific community in various congresses and symposia as well as through direct contacts and collaborations. Conversion of th...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/j.femsre.2005.04.001

    authors: Pedersen MB,Iversen SL,Sørensen KI,Johansen E

    更新日期:2005-08-01 00:00:00