Abstract：
:Repeated sequences are commonly present in the sites for DNA replication initiation in bacterial, archaeal, and eukaryotic replicons. Those motifs are usually the binding places for replication initiation proteins or replication regulatory factors. In prokaryotic replication origins, the most abundant repeated sequences are DnaA boxes which are the binding sites for chromosomal replication initiation protein DnaA, iterons which bind plasmid or phage DNA replication initiators, defined motifs for site-specific DNA methylation, and 13-nucleotide-long motifs of a not too well-characterized function, which are present within a specific region of replication origin containing higher than average content of adenine and thymine residues. In this review, we specify methods allowing identification of a replication origin, basing on the localization of an AT-rich region and the arrangement of the origin's structural elements. We describe the regularity of the position and structure of the AT-rich regions in bacterial chromosomes and plasmids. The importance of 13-nucleotide-long repeats present at the AT-rich region, as well as other motifs overlapping them, was pointed out to be essential for DNA replication initiation including origin opening, helicase loading and replication complex assembly. We also summarize the role of AT-rich region repeated sequences for DNA replication regulation.
journal_name
FEMS Microbiol Revjournal_title
FEMS microbiology reviewsauthors
Rajewska M,Wegrzyn K,Konieczny Idoi
10.1111/j.1574-6976.2011.00300.xsubject
Has Abstractpub_date
2012-03-01 00:00:00pages
408-34issue
2eissn
0168-6445issn
1574-6976journal_volume
36pub_type
杂志文章,评审abstract：:The head assembly pathway of bacteriophage HK97 shares many features with head assembly pathways determined for other dsDNA phages, and it also provides examples of novel variations on the basic theme. We describe aspects of two specific steps in the assembly pathway, the covalent cross-linking among the assembled hea...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.1995.tb00186.x
更新日期：1995-08-01 00:00:00
abstract：:The initial step of methanogenesis from CO2 is the formation of formyl-methanofuran (formyl-MFR) from methanofuran (MFR), CO2 and H2. The enzymology of this novel type of CO2 fixation reaction has been difficult to study because formyl-MFR synthesis is subject to a complex activation. Recently, however, a number of ad...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1016/0378-1097(90)90473-4
更新日期：1990-12-01 00:00:00
abstract：:Conditions that sustain constant bacterial growth are seldom found in nature. Oligotrophic environments and competition among microorganisms force bacteria to be able to adapt quickly to rough and changing situations. A particular lifestyle composed of continuous cycles of growth and starvation is commonly referred to...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.2010.00213.x
更新日期：2010-07-01 00:00:00
abstract：:Understanding the structure, functionalities and biology of functional amyloids is an issue of emerging interest. Inclusion bodies, namely protein clusters formed in recombinant bacteria during protein production processes, have emerged as unanticipated, highly tunable models for the scrutiny of the physiology and arc...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fuy038
更新日期：2019-01-01 00:00:00
abstract：:Enterohaemorrhagic Escherichia coli O157:H7 was first implicated in human disease in the early 1980s, with ruminants cited as the primary reservoirs. Preliminary studies indicated cattle to be the sole source of E. coli O157:H7 outbreaks in humans; however, further epidemiological studies soon demonstrated that E. col...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.2008.00138.x
更新日期：2009-03-01 00:00:00
abstract：:A high frequency of human cytomegalovirus (HCMV) genome and antigens in tumor samples of patients with different malignancies is now well documented, although the causative role for HCMV in the development of the neoplasias remains to be established. HCMV infection can modulate multiple cellular regulatory and signall...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1016/j.femsre.2003.07.005
更新日期：2004-02-01 00:00:00
abstract：:Five species of parasite cause malaria in humans with the most severe disease caused by Plasmodium falciparum. Many of the proteins encoded in the P. falciparum genome are unusually enriched in repetitive low-complexity sequences containing a limited repertoire of amino acids. These repetitive sequences expand and con...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fux046
更新日期：2017-11-01 00:00:00
abstract：:Respiratory syncytial virus is the major respiratory pathogen of infants and children worldwide, with no effective treatment or vaccine available. Steady progress has been made in understanding the respiratory syncytial virus life cycle and the consequences of infection, but many areas of respiratory syncytial virus b...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.2006.00025.x
更新日期：2006-09-01 00:00:00
abstract：:The wealth of information existing on the general principle of S-layers has revealed a broad application potential. The most relevant features exploited in applied S-layer research are: (i) pores passing through S-layers show identical size and morphology and are in the range of ultrafiltration membranes; (ii) functio...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.1997.tb00306.x
更新日期：1997-06-01 00:00:00
abstract：:Toxin-antitoxin systems (TAs) are ubiquitous among bacteria and play a crucial role in the dissemination and evolution of antibiotic resistance, such as maintaining multi-resistant plasmids and inducing persistence formation. Generally, activities of the toxins are neutralised by their conjugate antitoxins. In contras...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fux006
更新日期：2017-05-01 00:00:00
abstract：:Cyanobacteria of the genera Synechococcus and Prochlorococcus dominate the prokaryotic component of the picophytoplankton in the oceans. It is still less than 10 years since the discovery of phages that infect marine Synechococcus and the beginning of the characterisation of these phages and assessment of their ecolog...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1016/S0168-6445(03)00016-0
更新日期：2003-04-01 00:00:00
abstract：:DNA microarrays are a powerful and promising approach to gain a detailed understanding of the bacterial response and the molecular cross-talk that can occur as a consequence of host-pathogen interactions. However, published studies mainly describe the host response to infection. Analysis of bacterial gene regulation i...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.2008.00103.x
更新日期：2008-05-01 00:00:00
abstract：:Gene conversion is defined as the non-reciprocal transfer of information between homologous sequences. Despite methodological problems to establish non-reciprocity, gene conversion has been demonstrated in a wide variety of bacteria. Besides examples of high-frequency reversion of mutations in repeated genes, gene con...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1016/j.femsre.2004.10.004
更新日期：2005-04-01 00:00:00
abstract：:In the present review, we aim to provide a general introduction to different facets of the arms race between pathogens and their hosts/environment, emphasizing its evolutionary aspects. We focus on vector-borne parasitic protozoa, which have to adapt to both invertebrate and vertebrate hosts. Using Leishmania, Trypano...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fuw018
更新日期：2016-09-01 00:00:00
abstract：:The urogenital tract appears to be the only niche of the human body that shows clear differences in microbiota between men and women. The female reproductive tract has special features in terms of immunological organization, an epithelial barrier, microbiota, and influence by sex hormones such as estrogen. While the u...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/1574-6976.12029
更新日期：2013-09-01 00:00:00
abstract：:The P(II) proteins are one of the most widely distributed families of signal transduction proteins in nature. They are pivotal players in the control of nitrogen metabolism in bacteria and archaea, and are also found in the plastids of plants. Quite remarkably, P(II) proteins control the activities of a diverse rang...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.2012.00351.x
更新日期：2013-03-01 00:00:00
abstract：:Expression cloning is a relatively new method for fast and efficient cloning of enzyme genes from fungi that are known to make complex enzyme mixtures. In contrast to traditional cloning methods that are usually dependent on knowledge of at least a partial amino acid sequence in order to synthesize appropriate DNA pro...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.1997.tb00343.x
更新日期：1997-08-01 00:00:00
abstract：:The successful genetic manipulation of Clostridium acetobutylicum for the increased production of solvents will depend on an understanding of gene structure and regulation in the bacterium. The glutamine synthetase (glnA) gene is regulated by antisense RNA, transcribed from a downstream promoter, in the opposite direc...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.1995.tb00213.x
更新日期：1995-10-01 00:00:00
abstract：:Antibiotics are the most common type of medication prescribed to children, including infants, in the Western world. While use of antibiotics has transformed previously lethal infections into relatively minor diseases, antibiotic treatments can have adverse effects as well. It has been shown in children, adults and ani...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fuy018
更新日期：2018-07-01 00:00:00
abstract：:The natural light environment is important to many prokaryotes. Most obviously, phototrophic prokaryotes need to acclimate their photosynthetic apparatus to the prevailing light conditions, and such acclimation is frequently complemented by motility to enable cells to relocate in search of more favorable illumination ...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fux045
更新日期：2017-11-01 00:00:00
abstract：:Small cells dominate photosynthetic biomass and primary production in many marine ecosystems. Traditionally, picoplankton refers to cells < or =2 microm. Here we extend the size range of the organisms considered to 3 microm, a threshold often used operationally in field studies. While the prokaryotic component of pico...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.2008.00121.x
更新日期：2008-08-01 00:00:00
abstract：:Stress responses are crucial for bacteria to survive harmful conditions that they encounter in the environment. Although gene regulatory mechanisms underlying stress responses in bacteria have been thoroughly characterised for decades, recent advances in imaging technologies helped to uncover previously hidden dynamic...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章
doi：10.1093/femsre/fuaa022
更新日期：2020-09-01 00:00:00
abstract：:Wall teichoic acids (WTAs) are charged glycopolymers containing phosphodiester-linked polyol units and represent one of the major components of Gram-positive cell envelope. WTAs have important physiological functions in cell division, gene transfer, surface adhesion, drug resistance, and biofilm formation, and are cri...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章
doi：10.1093/femsre/fuaa064
更新日期：2020-12-03 00:00:00
abstract：:What a living organism looks like and how it works and what are its components-all this is encoded on DNA, the genetic blueprint. Consequently, the way to change an organism is to change its genetic information. Since the first pieces of recombinant DNA have been used to transform cells in the 1970s, this approach has...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1093/femsre/fuv030
更新日期：2015-11-01 00:00:00
abstract：:This review concerns the issues involved in the industrial development of fed-batch culture processes with Saccharomyces cerevisiae strains producing heterologous proteins. Most of process development considerations with fed-batch recombinant cultures are linked to the reliability and reproducibility of the process fo...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.1994.tb00146.x
更新日期：1994-12-01 00:00:00
abstract：:Water is one of the most important bacterial habitats on Earth. As such, water represents also a major way of dissemination of bacteria between different environmental compartments. Human activities led to the creation of the so-called urban water cycle, comprising different sectors (waste, surface, drinking water), a...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/1574-6976.12062
更新日期：2014-07-01 00:00:00
abstract：:The peroxisomal membrane compartmentalizes specific metabolic functions in the intermediary metabolism of various aerobic eukarya. In yeast, peroxisomal membranes are typified by their small width (+/- 7-8 nm) and absence of large integral membrane proteins in freeze-etch replicas. They show a unique polypeptide profi...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6976.1993.tb00002.x
更新日期：1993-08-01 00:00:00
abstract：:Thioredoxin is a small (Mr 12,000) ubiquitous redox protein with the conserved active site structure: -Trp-Cys-Gly-Pro-Cys-. The oxidized form (Trx-S2) contains a disulfide bridge which is reduced by NADPH and thioredoxin reductase; the reduced form [Trx(SH)2] is a powerful protein disulfide oxidoreductase. Thioredoxi...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6968.1988.tb02747.x
更新日期：1988-12-01 00:00:00
abstract：:A number of peptidases and proteases have been identified in Escherichia coli. Although their specific physiological roles are often not known, some of them have been shown to be involved in: the maturation of nascent polypeptide chains; the maturation of protein precursors; the signal peptide processing of exported p...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1016/0168-6445(89)90035-1
更新日期：1989-09-01 00:00:00
abstract：:General principles of membrane function have been elucidated by the study of lactic acid bacteria. In this review, the operation and function of ion pumps, secondary transport systems and solute ATPases will be discussed. Despite their differences in kinetics and mechanisms between the transport systems, structural si...
journal_title：FEMS microbiology reviews
pub_type： 杂志文章,评审
doi：10.1111/j.1574-6968.1990.tb04881.x
更新日期：1990-09-01 00:00:00
