Distribution and evolution of nisin-sucrose elements in Lactococcus lactis.

Abstract:

:The distribution, architecture, and conjugal capacity of nisin-sucrose elements in wild-type Lactococcus lactis strains were studied. Element architecture was analyzed with the aid of hybridizations to different probes derived from the nisin-sucrose transposon Tn5276 of L. lactis NIZO R5, including its left and right ends, the nisA gene, and IS1068 (previously designated iso-IS904), located between the left end and the nisA gene. Three classes of nisin-sucrose elements could be distinguished in the 13 strains investigated. Classes I and II consist of conjugative transposons containing a nisA gene and a nisZ gene, respectively. Representative conjugative transposons of these classes include Tn5276 (class I) from L. lactis NIZO R5 and Tn5278 (class II) from L. lactis ILC11. The class II transposon found in L. lactis NCK400 and probably all class II elements are devoid of IS1068-like elements, which eliminates the involvement of an iso-IS1068 element in conjugative transposition. Members of class III contain a nisZ gene, are nonconjugative, and do not contain sequences similar to the left end of Tn5276 at the appropriate position. The class III element from L. lactis NIZO 22186 was found to contain an iso-IS1068 element, termed IS1069, at a position corresponding to that of IS1068 in Tn5276 but in the inverted orientation. The results suggest that an iso-IS1068-mediated rearrangement is responsible for the dislocation of the transposon's left end in this strain. A model for the evolution of nisin-sucrose elements is proposed, and the practical implications for transferring nisin A or nisin Z production and immunity are discussed.

journal_name

Appl Environ Microbiol

authors

Rauch PJ,Beerthuyzen MM,de Vos WM

doi

10.1128/AEM.60.6.1798-1804.1994

subject

Has Abstract

pub_date

1994-06-01 00:00:00

pages

1798-804

issue

6

eissn

0099-2240

issn

1098-5336

journal_volume

60

pub_type

杂志文章
  • Risk assessment in shellfish-borne outbreaks of hepatitis A.

    abstract::In the present work, we aimed at determining the relationship between the hepatitis A virus (HAV) numbers in imported frozen coquina clams involved in two hepatitis outbreaks, as well as the risk for human health. Due to HAV unculturability, a standardized TaqMan real-time reverse transcription-PCR controlling the vir...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01177-09

    authors: Pintó RM,Costafreda MI,Bosch A

    更新日期:2009-12-01 00:00:00

  • Diversity and ubiquity of bacteria capable of utilizing humic substances as electron donors for anaerobic respiration.

    abstract::Previous studies have demonstrated that reduced humic substances (HS) can be reoxidized by anaerobic bacteria such as Geobacter, Geothrix, and Wolinella species with a suitable electron acceptor; however, little is known of the importance of this metabolism in the environment. Recently we investigated this metabolism ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/aem.68.5.2445-2452.2002

    authors: Coates JD,Cole KA,Chakraborty R,O'Connor SM,Achenbach LA

    更新日期:2002-05-01 00:00:00

  • Neutral sugar composition and gravimetric yield of plant and bacterial fractions of feces.

    abstract::Separating dietary fiber from other polysaccharides in digesta and feces is necessary to understand its mechanisms of action. A gravimetric method that separates fecal plant and bacterial matter based on size and density was evaluated and modified to determine the plant and bacterial mass of lyophilized whole and blen...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.56.6.1786-1792.1990

    authors: Cabotaje LM,López-Guisa JM,Shinnick FL,Marlett JA

    更新日期:1990-06-01 00:00:00

  • Conversion of cis unsaturated fatty acids to trans, a possible mechanism for the protection of phenol-degrading Pseudomonas putida P8 from substrate toxicity.

    abstract::A trans unsaturated fatty acid was found as a major constituent in the lipids of Pseudomonas putida P8. The fatty acid was identified as 9-trans-hexadecenoic acid by gas chromatography, argentation thin-layer chromatography, and infrared absorption spectrometry. Growing cells of P. putida P8 reacted to the presence of...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.58.6.1847-1852.1992

    authors: Heipieper HJ,Diefenbach R,Keweloh H

    更新日期:1992-06-01 00:00:00

  • Specific fusion of β-1,4-endoglucanase and β-1,4-glucosidase enhances cellulolytic activity and helps in channeling of intermediates.

    abstract::Identification and design of new cellulolytic enzymes with higher catalytic efficiency are a key factor in reducing the production cost of lignocellulosic bioalcohol. We report here identification of a novel β-glucosidase (Gluc1C) from Paenibacillus sp. strain MTCC 5639 and construction of bifunctional chimeric protei...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01386-12

    authors: Adlakha N,Sawant S,Anil A,Lali A,Yazdani SS

    更新日期:2012-10-01 00:00:00

  • Protein method for investigating mercuric reductase gene expression in aquatic environments.

    abstract::A colorimetric assay for NADPH-dependent, mercuric ion-specific oxidoreductase activity was developed to facilitate the investigation of mercuric reductase gene expression in polluted aquatic ecosystems. Protein molecules extracted directly from unseeded freshwater and samples seeded with Pseudomonas aeruginosa PU21 (...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.64.2.695-702.1998

    authors: Ogunseitan OA

    更新日期:1998-02-01 00:00:00

  • Novel assay to assess permissiveness of a soil microbial community toward receipt of mobile genetic elements.

    abstract::There is a wealth of evidence indicating that mobile genetic elements can spread in natural microbial communities. However, little is known regarding the fraction of the community that actually engages in this behavior. Here we report on a new approach to quantify the fraction of a bacterial community that is able to ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02713-09

    authors: Musovic S,Dechesne A,Sørensen J,Smets BF

    更新日期:2010-07-01 00:00:00

  • Polyacrylamide-entrapped Rhizobium as an inoculant for legumes.

    abstract::Pot experiments showed that Rhizobium japonicum cells entrapped in a polyacrylamide gel could be used as an inoculant for soybeans and compared favorably to laboratory-made peat base inoculant containing the same bacterial strain. ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.37.4.779-781.1979

    authors: Dommergues YR,Diem HG,Divies C

    更新日期:1979-04-01 00:00:00

  • Role of IncP-1β plasmids pWDL7::rfp and pNB8c in chloroaniline catabolism as determined by genomic and functional analyses.

    abstract::Broad-host-range catabolic plasmids play an important role in bacterial degradation of man-made compounds. To gain insight into the role of these plasmids in chloroaniline degradation, we determined the first complete nucleotide sequences of an IncP-1 chloroaniline degradation plasmid, pWDL7::rfp and its close relativ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.07480-11

    authors: Król JE,Penrod JT,McCaslin H,Rogers LM,Yano H,Stancik AD,Dejonghe W,Brown CJ,Parales RE,Wuertz S,Top EM

    更新日期:2012-02-01 00:00:00

  • Genetic diversity and fitness of Fusarium graminearum populations from rice in Korea.

    abstract::Fusarium graminearum is an important fungal pathogen of cereal crops and produces mycotoxins, such as the trichothecenes nivalenol and deoxynivalenol. This species may be subdivided into a series of genetic lineages or phylogenetic species. We identified strains of F. graminearum from the Republic of Korea to lineage,...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02287-08

    authors: Lee J,Chang IY,Kim H,Yun SH,Leslie JF,Lee YW

    更新日期:2009-05-01 00:00:00

  • Modeling the Inactivation of Viruses from the Coronaviridae Family in Response to Temperature and Relative Humidity in Suspensions or on Surfaces.

    abstract::Temperature and relative humidity are major factors determining virus inactivation in the environment. This article reviews inactivation data regarding coronaviruses on surfaces and in liquids from published studies and develops secondary models to predict coronaviruses inactivation as a function of temperature and re...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01244-20

    authors: Guillier L,Martin-Latil S,Chaix E,Thébault A,Pavio N,Le Poder S,Batéjat C,Biot F,Koch L,Schaffner DW,Sanaa M,Covid-19 Emergency Collective Expert Appraisal Group.

    更新日期:2020-09-01 00:00:00

  • Characteristics of environmental isolates of Legionella pneumophila.

    abstract::Thirty-eight cultures of Legionella pneumophila isolated from surface waters were characterized by their morphological, tinctorial, biochemical, and serological properties and by their ability to produce disease in guinea pigs. Their susceptibility to antimicrobial agents also was tested. When they were compared with...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.42.1.109-115.1981

    authors: Orrison LH,Cherry WB,Fliermans CB,Dees SB,McDougal LK,Dodd DJ

    更新日期:1981-07-01 00:00:00

  • Round robin investigation of methods for the recovery of poliovirus from drinking water.

    abstract::Six laboratories actively involved in water virology research participated in a methods evaluation study, conducted under the auspices of the American Society for Testing and Materials Committee on Viruses in the Aquatic Environment, Task Force on Drinking Water. Each participant was asked to examine the Viradel (viru...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.47.1.144-150.1984

    authors: Melnick JL,Safferman R,Rao VC,Goyal S,Berg G,Dahling DR,Wright BA,Akin E,Stetler R,Sorber C

    更新日期:1984-01-01 00:00:00

  • Phospholipid Fatty Acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals.

    abstract::The phospholipid fatty acid (PLFA) pattern was analyzed in a forest humus and in an arable soil experimentally polluted with Cd, Cu, Ni, Pb, or Zn at different concentrations. In both soil types, there were gradual changes in the PLFA patterns for the different levels of metal contamination. The changes in the forest ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.59.11.3605-3617.1993

    authors: Frostegård A,Tunlid A,Bååth E

    更新日期:1993-11-01 00:00:00

  • NAH plasmid-mediated catabolism of anthracene and phenanthrene to naphthoic acids.

    abstract::Pseudomonas fluorescens 5R contains an NAH7-like plasmid (pKA1), and P. fluorescens 5R mutant 5RL contains a bioluminescent reporter plasmid (pUTK21) which was constructed by transposon mutagenesis. Polymerase chain reaction mapping confirmed the localization of lux transposon Tn4431 300 bp downstream from the start o...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.59.6.1938-1942.1993

    authors: Menn FM,Applegate BM,Sayler GS

    更新日期:1993-06-01 00:00:00

  • Significance of Extracellular Protease for Growth of a Heterotrophic Bacterium, Aeromonas salmonicida.

    abstract::The role of protease produced by a heterotrophic bacterium during growth was investigated with Aeromonas salmonicida, the pathogen of fish furunculosis, strain A-7301 and its protease-deficient mutant NTG-1 induced by mutagenesis. Strain A-7301 produced extracellular protease in a mixed amino acid medium (composed of ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.50.4.1031-1037.1985

    authors: Sakai DK

    更新日期:1985-10-01 00:00:00

  • Isolation and characterization of carnocyclin a, a novel circular bacteriocin produced by Carnobacterium maltaromaticum UAL307.

    abstract::Carnobacterium maltaromaticum UAL307, isolated from fresh pork, exhibits potent activity against a number of gram-positive organisms, including numerous Listeria species. Three bacteriocins were isolated from culture supernatant, and using matrix-assisted laser desorption ionization-time of flight mass spectrometry an...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.00817-08

    authors: Martin-Visscher LA,van Belkum MJ,Garneau-Tsodikova S,Whittal RM,Zheng J,McMullen LM,Vederas JC

    更新日期:2008-08-01 00:00:00

  • Fibronectin enhances transfection of Staphylococcus aureus.

    abstract::The factor in normal sera primarily responsible for the enhancement of transfection (and transformation) of Staphylococcus aureus was identified as fibronectin. Serum samples which were depleted of fibronectin by affinity chromatography showed a marked decrease in enhancing activity. Fibronectin isolated from sera of ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.50.5.1315-1318.1985

    authors: Thompson NE,Bergdoll MS,Pattee PA

    更新日期:1985-11-01 00:00:00

  • Degradation of 1,2-dichloroethane by Ancylobacter aquaticus and other facultative methylotrophs.

    abstract::Cultures of the newly isolated bacterial strains AD20, AD25, and AD27, identified as strains of Ancylobacter aquaticus, were capable of growth on 1,2-dichloroethane (DCE) as the sole carbon and energy source. These strains, as well as two other new DCE utilizers, were facultative methylotrophs and were also able to gr...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.58.3.976-983.1992

    authors: van den Wijngaard AJ,van der Kamp KW,van der Ploeg J,Pries F,Kazemier B,Janssen DB

    更新日期:1992-03-01 00:00:00

  • Association of Campylobacter jejuni metabolic traits with multilocus sequence types.

    abstract::In this study, we describe the association of three Campylobacter jejuni metabolism-related traits, γ-glutamyl-transpeptidase (GGT), fucose permease (fucP), and secreted L-asparaginase [ansB(s)], with multilocus sequence types (STs). A total of 710 C. jejuni isolates with known STs were selected and originated from hu...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01023-12

    authors: de Haan CP,Llarena AK,Revez J,Hänninen ML

    更新日期:2012-08-01 00:00:00

  • Analysis of structural and physiological profiles to assess the effects of Cu on biofilm microbial communities.

    abstract::We investigated the effects of copper on the structure and physiology of freshwater biofilm microbial communities. For this purpose, biofilms that were grown during 4 weeks in a shallow, slightly polluted ditch were exposed, in aquaria in our laboratory, to a range of copper concentrations (0, 1, 3, and 10 microM). De...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.70.8.4512-4521.2004

    authors: Massieux B,Boivin ME,Van Den Ende FP,Langenskiöld J,Marvan P,Barranguet C,Admiraal W,Laanbroek HJ,Zwart G

    更新日期:2004-08-01 00:00:00

  • A virulent phage infecting Lactococcus garvieae, with homology to Lactococcus lactis phages.

    abstract::A new virulent phage belonging to the Siphoviridae family and able to infect Lactococcus garvieae strains was isolated from compost soil. Phage GE1 has a prolate capsid (56 by 38 nm) and a long noncontractile tail (123 nm). It had a burst size of 139 and a latent period of 31 min. Its host range was limited to only tw...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02603-15

    authors: Eraclio G,Tremblay DM,Lacelle-Côté A,Labrie SJ,Fortina MG,Moineau S

    更新日期:2015-12-01 00:00:00

  • Direct effects of UV-B radiation on the freshwater heterotrophic nanoflagellate Paraphysomonas sp.

    abstract::The formation of DNA photoproducts in organisms exposed to ambient levels of UV-B radiation can lead to death and/or reduced population growth in aquatic systems. Dependence on photoenzymatic repair to reverse DNA damage caused by UV-B radiation is demonstrated for Paraphysomonas sp., a member of a widely distributed ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.02803-08

    authors: Macaluso AL,Mitchell DL,Sanders RW

    更新日期:2009-07-01 00:00:00

  • Development of genetic tools for Lactobacillus sakei: disruption of the beta-galactosidase gene and use of lacZ as a reporter gene To study regulation of the putative copper ATPase, AtkB.

    abstract::Downstream from the ptsHI operon of Lactobacillus sakei, the genes atkY and atkB, organized in an operon, were observed. The two putative proteins, AtkB and AtkY, show sequence similarity to the Enterococcus hirae copper P-type ATPase, responsible for copper efflux, and its negative regulator. Characterization of AtkB...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/aem.66.10.4272-4278.2000

    authors: Stentz R,Loizel C,Malleret C,Zagorec M

    更新日期:2000-10-01 00:00:00

  • Glutamate decarboxylase-mediated nisin resistance in Listeria monocytogenes.

    abstract::Analysis of a complete set of glutamate decarboxylase (gad) mutants of Listeria monocytogenes strain LO28 (ΔgadD1, ΔgadDT1, ΔgadD2, ΔgadT2, and ΔgadD3 mutants) revealed that the ΔgadD1 mutant is impaired in its ability to tolerate exposure to both sublethal and lethal levels of the lantibiotic nisin. gadD1 is strain v...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.00203-10

    authors: Begley M,Cotter PD,Hill C,Ross RP

    更新日期:2010-10-01 00:00:00

  • Identification of a universally primed-PCR-derived sequence-characterized amplified region marker for an antagonistic strain of Clonostachys rosea and development of a strain-specific PCR detection assay.

    abstract::We developed a PCR detection method that selectively recognizes a single biological control agent and demonstrated that universally primed PCR (UP-PCR) can identify strain-specific markers. Antagonistic strains of Clonostachys rosea (syn. Gliocladium roseum) were screened by UP-PCR, and a strain-specific marker was id...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/aem.66.11.4758-4763.2000

    authors: Bulat SA,Lübeck M,Alekhina IA,Jensen DF,Knudsen IM,Lübeck PS

    更新日期:2000-11-01 00:00:00

  • A group II intron-type open reading frame from the thermophile Bacillus (Geobacillus) stearothermophilus encodes a heat-stable reverse transcriptase.

    abstract::The production of a stable cDNA copy of an unstable RNA molecule by reverse transcription is a widely used and essential technology for many important applications, such as the construction of gene libraries, production of DNA probes, and analysis of gene expression by reverse transcriptase PCR (RT-PCR). However, the ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.70.12.7140-7147.2004

    authors: Vellore J,Moretz SE,Lampson BC

    更新日期:2004-12-01 00:00:00

  • Denitrification in marine sediment: measurement of capacity and estimate of in situ rate.

    abstract::The acetylene block technique was used to assay denitrification in undisturbed sediment cores of an intertidal mud flat. Nitrogen loss due to this process was estimated at 1 to 41 kg of N/hectare (ha) per year. Anaerobic nitrate-saturated slurry of the same sediment had a denitrification capacity of 1,026 kg of N/ha p...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.43.3.522-527.1982

    authors: Kaspar HF

    更新日期:1982-03-01 00:00:00

  • Factors influencing germination of Bacillus subtilis spores via activation of nutrient receptors by high pressure.

    abstract::Different nutrient receptors varied in triggering germination of Bacillus subtilis spores with a pressure of 150 MPa, the GerA receptor being more responsive than the GerB receptor and even more responsive than the GerK receptor. This hierarchy in receptor responsiveness to pressure was the same as receptor responsive...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.71.10.5879-5887.2005

    authors: Black EP,Koziol-Dube K,Guan D,Wei J,Setlow B,Cortezzo DE,Hoover DG,Setlow P

    更新日期:2005-10-01 00:00:00

  • Contraselectable streptomycin susceptibility determinant for genetic manipulation and analysis of Helicobacter pylori.

    abstract::Many Helicobacter pylori genetic studies would benefit from an ability to move DNA sequences easily between strains by transformation and homologous recombination, without needing to leave a conventional drug resistance determinant at the targeted locus. Presented here is a two-gene cassette that can be selected both ...

    journal_title:Applied and environmental microbiology

    pub_type: 杂志文章

    doi:10.1128/AEM.01135-06

    authors: Dailidiene D,Dailide G,Kersulyte D,Berg DE

    更新日期:2006-09-01 00:00:00