Complex demethylation patterns at Sp1 binding sites in F9 embryonal carcinoma cells.

Abstract:

:The ubiquitous transcription factor Sp1 has been implicated in the mechanism which maintains CpG islands methylation-free. Plasmids containing GC boxes (Sp1 sites) were in vitro methylated at every CpG dinucleotide. After stable introduction into F9 embryonal carcinoma cells, we analysed the methylation of the sequence around the GC boxes with bisulphite sequencing. In agreement with restriction site analysis by other labs, we found preferential demethylation at GC box DNA versus control DNA. However, the bisulphite sequencing which permits the analysis of every CpG site on a given DNA molecule, revealed a complex pattern of methylated and unmethylated sites. Upon prolonged culture the pattern became simpler, with most sites demethylated but certain sites being consistently methylated.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Silke J,Rother KI,Georgiev O,Schaffner W,Matsuo K

doi

10.1016/0014-5793(95)00830-3

subject

Has Abstract

pub_date

1995-08-21 00:00:00

pages

170-4

issue

3

eissn

0014-5793

issn

1873-3468

pii

0014-5793(95)00830-3

journal_volume

370

pub_type

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