Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy.

Abstract:

:The evolutionary progression from primary to metastatic prostate cancer is largely uncharted, and the implications for liquid biopsy are unexplored. We infer detailed reconstructions of tumor phylogenies in ten prostate cancer patients with fatal disease, and investigate them in conjunction with histopathology and tumor DNA extracted from blood and cerebrospinal fluid. Substantial evolution occurs within the prostate, resulting in branching into multiple spatially intermixed lineages. One dominant lineage emerges that initiates and drives systemic metastasis, where polyclonal seeding between sites is common. Routes to metastasis differ between patients, and likely genetic drivers of metastasis distinguish the metastatic lineage from the lineage that remains confined to the prostate within each patient. Body fluids capture features of the dominant lineage, and subclonal expansions that occur in the metastatic phase are non-uniformly represented. Cerebrospinal fluid analysis reveals lineages not detected in blood-borne DNA, suggesting possible clinical utility.

journal_name

Nat Commun

journal_title

Nature communications

authors

Woodcock DJ,Riabchenko E,Taavitsainen S,Kankainen M,Gundem G,Brewer DS,Ellonen P,Lepistö M,Golubeva YA,Warner AC,Tolonen T,Jasu J,Isaacs WB,Emmert-Buck MR,Nykter M,Visakorpi T,Bova GS,Wedge DC

doi

10.1038/s41467-020-18843-5

subject

Has Abstract

pub_date

2020-10-08 00:00:00

pages

5070

issue

1

issn

2041-1723

pii

10.1038/s41467-020-18843-5

journal_volume

11

pub_type

杂志文章
  • PPARγ is an E3 ligase that induces the degradation of NFκB/p65.

    abstract::Nuclear factor-κB (NFκB) and peroxisome proliferator activated receptor-γ (PPARγ) are both transcription factors that perform distinct but overlapping roles in cellular regulation. Here we report that PPARγ acts as an E3 ubiquitin ligase, physically interacting with p65 to induce its ubiquitination and degradation. Th...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2270

    authors: Hou Y,Moreau F,Chadee K

    更新日期:2012-01-01 00:00:00

  • Multiple novel gene-by-environment interactions modify the effect of FTO variants on body mass index.

    abstract::Genetic studies have shown that obesity risk is heritable and that, of the many common variants now associated with body mass index, those in an intron of the fat mass and obesity-associated (FTO) gene have the largest effect. The size of the UK Biobank, and its joint measurement of genetic, anthropometric and lifesty...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12724

    authors: Young AI,Wauthier F,Donnelly P

    更新日期:2016-09-06 00:00:00

  • as-Indaceno[3,2,1,8,7,6-ghijklm]terrylene as a near-infrared absorbing C70-fragment.

    abstract::Carbon and hydrogen are fundamental components of organic molecules and a fascinating plethora of functions can be generated using these two elements. Yet, realizing attractive electronic structures only by using carbon and hydrogen remains challenging. Herein, we report the synthesis and properties of the C70 fragmen...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17684-6

    authors: Tanaka Y,Fukui N,Shinokubo H

    更新日期:2020-08-03 00:00:00

  • Phosphoinositide 3-kinase enables phagocytosis of large particles by terminating actin assembly through Rac/Cdc42 GTPase-activating proteins.

    abstract::Phagocytosis is responsible for the elimination of particles of widely disparate sizes, from large fungi or effete cells to small bacteria. Though superficially similar, the molecular mechanisms involved differ: engulfment of large targets requires phosphoinositide 3-kinase (PI3K), while that of small ones does not. H...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9623

    authors: Schlam D,Bagshaw RD,Freeman SA,Collins RF,Pawson T,Fairn GD,Grinstein S

    更新日期:2015-10-14 00:00:00

  • Publisher Correction: Control of laser plasma accelerated electrons for light sources.

    abstract::The original version of this Article contained an error in the last sentence of the first paragraph of the Introduction and incorrectly read 'A proper electron beam control is one of the main challenges towards the Graal of developing a compact alternative of X-ray free-electron lasers by coupling LWFA gigaelectron-vo...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-018-04299-1

    authors: André T,Andriyash IA,Loulergue A,Labat M,Roussel E,Ghaith A,Khojoyan M,Thaury C,Valléau M,Briquez F,Marteau F,Tavakoli K,N'Gotta P,Dietrich Y,Lambert G,Malka V,Benabderrahmane C,Vétéran J,Chapuis L,El Ajjouri T,Se

    更新日期:2018-05-02 00:00:00

  • Ultrasmall targeted nanoparticles with engineered antibody fragments for imaging detection of HER2-overexpressing breast cancer.

    abstract::Controlling the biodistribution of nanoparticles upon intravenous injection is the key to achieving target specificity. One of the impediments in nanoparticle-based tumor targeting is the inability to limit the trafficking of nanoparticles to liver and other organs leading to smaller accumulated amounts in tumor tissu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06271-5

    authors: Chen F,Ma K,Madajewski B,Zhuang L,Zhang L,Rickert K,Marelli M,Yoo B,Turker MZ,Overholtzer M,Quinn TP,Gonen M,Zanzonico P,Tuesca A,Bowen MA,Norton L,Subramony JA,Wiesner U,Bradbury MS

    更新日期:2018-10-08 00:00:00

  • One-by-one trap activation in silicon nanowire transistors.

    abstract::Flicker or 1/f noise in metal-oxide-semiconductor field-effect transistors (MOSFETs) has been identified as the main source of noise at low frequency. It often originates from an ensemble of a huge number of charges becoming trapped and de-trapped. However, as a deviation from the well-known model of 1/f noise is obse...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1092

    authors: Clément N,Nishiguchi K,Fujiwara A,Vuillaume D

    更新日期:2010-10-19 00:00:00

  • High efficiency perovskite quantum dot solar cells with charge separating heterostructure.

    abstract::Metal halide perovskite semiconductors possess outstanding characteristics for optoelectronic applications including but not limited to photovoltaics. Low-dimensional and nanostructured motifs impart added functionality which can be exploited further. Moreover, wider cation composition tunability and tunable surface l...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10856-z

    authors: Zhao Q,Hazarika A,Chen X,Harvey SP,Larson BW,Teeter GR,Liu J,Song T,Xiao C,Shaw L,Zhang M,Li G,Beard MC,Luther JM

    更新日期:2019-06-28 00:00:00

  • Activation of DR3 signaling causes loss of ILC3s and exacerbates intestinal inflammation.

    abstract::TNF-like ligand 1 A (TL1A) and death receptor 3 (DR3) are a ligand-receptor pair involved in the pathogenesis of inflammatory bowel disease. Group 3 innate lymphoid cells (ILC3s) regulate intestinal immunity and highly express DR3. Here, we report that activation of DR3 signaling by an agonistic anti-DR3 antibody incr...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11304-8

    authors: Li J,Shi W,Sun H,Ji Y,Chen Y,Guo X,Sheng H,Shu J,Zhou L,Cai T,Qiu J

    更新日期:2019-07-29 00:00:00

  • The transcriptional repressor NKAP is required for the development of iNKT cells.

    abstract::Invariant natural killer T cells have a distinct developmental pathway from conventional αβ T cells. Here we demonstrate that the transcriptional repressor NKAP is required for invariant natural killer T cell but not conventional T cell development. In CD4-cre NKAP conditional knockout mice, invariant natural killer T...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2580

    authors: Thapa P,Das J,McWilliams D,Shapiro M,Sundsbak R,Nelson-Holte M,Tangen S,Anderson J,Desiderio S,Hiebert S,Sant'angelo DB,Shapiro VS

    更新日期:2013-01-01 00:00:00

  • Probing low-energy hyperbolic polaritons in van der Waals crystals with an electron microscope.

    abstract::Van der Waals materials exhibit intriguing structural, electronic, and photonic properties. Electron energy loss spectroscopy within scanning transmission electron microscopy allows for nanoscale mapping of such properties. However, its detection is typically limited to energy losses in the eV range-too large for prob...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00056-y

    authors: Govyadinov AA,Konečná A,Chuvilin A,Vélez S,Dolado I,Nikitin AY,Lopatin S,Casanova F,Hueso LE,Aizpurua J,Hillenbrand R

    更新日期:2017-07-21 00:00:00

  • Orbitofrontal lesions eliminate signalling of biological significance in cue-responsive ventral striatal neurons.

    abstract::The ventral striatum has long been proposed as an integrator of biologically significant associative information to drive actions. Although inputs from the amygdala and hippocampus have been much studied, the role of prominent inputs from orbitofrontal cortex (OFC) are less well understood. Here, we recorded single-un...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8195

    authors: Cooch NK,Stalnaker TA,Wied HM,Bali-Chaudhary S,McDannald MA,Liu TL,Schoenbaum G

    更新日期:2015-05-21 00:00:00

  • Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands.

    abstract::The molecular pathogenesis of salivary gland acinic cell carcinoma (AciCC) is poorly understood. The secretory Ca-binding phosphoprotein (SCPP) gene cluster at 4q13 encodes structurally related phosphoproteins of which some are specifically expressed at high levels in the salivary glands and constitute major component...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08069-x

    authors: Haller F,Bieg M,Will R,Körner C,Weichenhan D,Bott A,Ishaque N,Lutsik P,Moskalev EA,Mueller SK,Bähr M,Woerner A,Kaiser B,Scherl C,Haderlein M,Kleinheinz K,Fietkau R,Iro H,Eils R,Hartmann A,Plass C,Wiemann S,Aga

    更新日期:2019-01-21 00:00:00

  • Photonic zero mode in a non-Hermitian photonic lattice.

    abstract::Zero-energy particles (such as Majorana fermions) are newly predicted quasiparticles and are expected to play an important role in fault-tolerant quantum computation. In conventional Hermitian quantum systems, however, such zero states are vulnerable and even become vanishing if couplings with surroundings are of the ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03822-8

    authors: Pan M,Zhao H,Miao P,Longhi S,Feng L

    更新日期:2018-04-03 00:00:00

  • Pod shattering resistance associated with domestication is mediated by a NAC gene in soybean.

    abstract::Loss of seed dispersal is a key agronomical trait targeted by ancient human selection and has been regarded as a milestone of crop domestication. In this study, in the legume crop soybean Glycine max (L.) Merr. which provides vegetable oils and proteins for humans, we show that the key cellular feature of the shatteri...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4352

    authors: Dong Y,Yang X,Liu J,Wang BH,Liu BL,Wang YZ

    更新日期:2014-01-01 00:00:00

  • Cytoplasmic DAXX drives SQSTM1/p62 phase condensation to activate Nrf2-mediated stress response.

    abstract::Autophagy cargo recognition and clearance are essential for intracellular protein quality control. SQSTM1/p62 sequesters intracellular aberrant proteins and mediates cargo delivery for their selective autophagic degradation. The formation of p62 non-membrane-bound liquid compartments is critical for its function as a ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11671-2

    authors: Yang Y,Willis TL,Button RW,Strang CJ,Fu Y,Wen X,Grayson PRC,Evans T,Sipthorpe RJ,Roberts SL,Hu B,Zhang J,Lu B,Luo S

    更新日期:2019-08-21 00:00:00

  • The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts.

    abstract::In response to intracellular signals in Gram--negative bacteria, translational riboswitches--commonly embedded in messenger RNAs (mRNAs)-regulate gene expression through inhibition of translation initiation. It is generally thought that this regulation originates from occlusion of the Shine-Dalgarno (SD) sequence upon...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9976

    authors: Rinaldi AJ,Lund PE,Blanco MR,Walter NG

    更新日期:2016-01-19 00:00:00

  • Discovery and enantiocontrol of axially chiral urazoles via organocatalytic tyrosine click reaction.

    abstract::Axially chiral compounds play an important role in areas such as asymmetric catalysis. The tyrosine click-like reaction is an efficient approach for synthesis of urazoles with potential applications in pharmaceutical and asymmetric catalysis. Here we discover a class of urazole with axial chirality by restricted rotat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10677

    authors: Zhang JW,Xu JH,Cheng DJ,Shi C,Liu XY,Tan B

    更新日期:2016-02-11 00:00:00

  • High-throughput preparation of radioprotective polymers via Hantzsch's reaction for in vivo X-ray damage determination.

    abstract::Radioprotectors for acute injuries caused by large doses of ionizing radiation are vital to national security, public health and future development of humankind. Here, we develop a strategy to explore safe and efficient radioprotectors by combining Hantzsch's reaction, high-throughput methods and polymer chemistry. A ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20027-0

    authors: Liu G,Zeng Y,Lv T,Mao T,Wei Y,Jia S,Gou Y,Tao L

    更新日期:2020-12-04 00:00:00

  • CEACAM1 promotes CD8+ T cell responses and improves control of a chronic viral infection.

    abstract::Dysfunction of CD8+ T cells can lead to the development of chronic viral infection. Identifying mechanisms responsible for such T cell dysfunction is therefore of great importance to understand how to prevent persistent viral infection. Here we show using lymphocytic choriomeningitis virus (LCMV) infection that carcin...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04832-2

    authors: Khairnar V,Duhan V,Patil AM,Zhou F,Bhat H,Thoens C,Sharma P,Adomati T,Friendrich SK,Bezgovsek J,Dreesen JD,Wennemuth G,Westendorf AM,Zelinskyy G,Dittmer U,Hardt C,Timm J,Göthert JR,Lang PA,Singer BB,Lang KS

    更新日期:2018-07-02 00:00:00

  • Signatures of Mottness and Hundness in archetypal correlated metals.

    abstract::Physical properties of multi-orbital materials depend not only on the strength of the effective interactions among the valence electrons but also on their type. Strong correlations are caused by either Mott physics that captures the Coulomb repulsion among charges, or Hund physics that aligns the spins in different or...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10257-2

    authors: Deng X,Stadler KM,Haule K,Weichselbaum A,von Delft J,Kotliar G

    更新日期:2019-06-20 00:00:00

  • ADAR-mediated RNA editing suppresses sleep by acting as a brake on glutamatergic synaptic plasticity.

    abstract::It has been postulated that synaptic potentiation during waking is offset by a homoeostatic reduction in net synaptic strength during sleep. However, molecular mechanisms to support such a process are lacking. Here we demonstrate that deficiencies in the RNA-editing gene Adar increase sleep due to synaptic dysfunction...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10512

    authors: Robinson JE,Paluch J,Dickman DK,Joiner WJ

    更新日期:2016-01-27 00:00:00

  • A spin torque meter with magnetic facet domains.

    abstract::Current-induced magnetic domain wall (DW) motion is an important operating principle of spintronic devices. Injected current generates spin torques (STs) on the DWs in two ways. One is the spin transfer from magnetic domains to the walls by the current flowing in the magnet. Current flow in attached heavy metals also ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06223-z

    authors: Moon KW,Kim C,Yoon J,Choi JW,Kim DO,Song KM,Kim D,Chun BS,Hwang C

    更新日期:2018-09-17 00:00:00

  • Exploring the wavefront of hard X-ray free-electron laser radiation.

    abstract::The high photon flux and femtosecond pulse duration of hard X-ray free-electron lasers have spurred a large variety of novel and fascinating experiments in physical, chemical and biological sciences. Many of these experiments depend fundamentally on a clean, well-defined wavefront. Here we explore the wavefront proper...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1950

    authors: Rutishauser S,Samoylova L,Krzywinski J,Bunk O,Grünert J,Sinn H,Cammarata M,Fritz DM,David C

    更新日期:2012-07-10 00:00:00

  • The child brain computes and utilizes internalized maternal choices.

    abstract::As children grow, they gradually learn how to make decisions independently. However, decisions like choosing healthy but less-tasty foods can be challenging for children whose self-regulation and executive cognitive functions are still maturing. We propose a computational decision-making process in which children esti...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11700

    authors: Lim SL,Cherry JB,Davis AM,Balakrishnan SN,Ha OR,Bruce JM,Bruce AS

    更新日期:2016-05-24 00:00:00

  • DRP1-mediated mitochondrial shape controls calcium homeostasis and muscle mass.

    abstract::Mitochondrial quality control is essential in highly structured cells such as neurons and muscles. In skeletal muscle the mitochondrial fission proteins are reduced in different physiopathological conditions including ageing sarcopenia, cancer cachexia and chemotherapy-induced muscle wasting. However, whether mitochon...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10226-9

    authors: Favaro G,Romanello V,Varanita T,Andrea Desbats M,Morbidoni V,Tezze C,Albiero M,Canato M,Gherardi G,De Stefani D,Mammucari C,Blaauw B,Boncompagni S,Protasi F,Reggiani C,Scorrano L,Salviati L,Sandri M

    更新日期:2019-06-12 00:00:00

  • nc886 is induced by TGF-β and suppresses the microRNA pathway in ovarian cancer.

    abstract::Transforming growth factor-β (TGF-β) signaling and microRNAs (miRNAs) are important gene regulatory components in cancer. Usually in advanced malignant stages, TGF-β signaling is elevated but global miRNA expression is suppressed. Such a gene expression signature is well illustrated in a fibrosis (or mesenchymal) subt...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03556-7

    authors: Ahn JH,Lee HS,Lee JS,Lee YS,Park JL,Kim SY,Hwang JA,Kunkeaw N,Jung SY,Kim TJ,Lee KS,Jeon SH,Lee I,Johnson BH,Choi JH,Lee YS

    更新日期:2018-03-21 00:00:00

  • Developmental genetic bases behind the independent origin of the tympanic membrane in mammals and diapsids.

    abstract::The amniote middle ear is a classical example of the evolutionary novelty. Although paleontological evidence supports the view that mammals and diapsids (modern reptiles and birds) independently acquired the middle ear after divergence from their common ancestor, the developmental bases of these transformations remain...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7853

    authors: Kitazawa T,Takechi M,Hirasawa T,Adachi N,Narboux-Nême N,Kume H,Maeda K,Hirai T,Miyagawa-Tomita S,Kurihara Y,Hitomi J,Levi G,Kuratani S,Kurihara H

    更新日期:2015-04-22 00:00:00

  • Role of syn-eruptive plagioclase disequilibrium crystallization in basaltic magma ascent dynamics.

    abstract::Timescales of magma ascent in conduit models are typically assumed to be much longer than crystallization and gas exsolution for basaltic eruptions. However, it is now recognized that basaltic magmas may rise fast enough for disequilibrium processes to play a key role on the ascent dynamics. The quantification of the ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13402

    authors: La Spina G,Burton M,De' Michieli Vitturi M,Arzilli F

    更新日期:2016-12-12 00:00:00

  • Signature of coexistence of superconductivity and ferromagnetism in two-dimensional NbSe2 triggered by surface molecular adsorption.

    abstract::Ferromagnetism is usually deemed incompatible with superconductivity. Consequently, the coexistence of superconductivity and ferromagnetism is usually observed only in elegantly designed multi-ingredient structures in which the two competing electronic states originate from separate structural components. Here we repo...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11210

    authors: Zhu X,Guo Y,Cheng H,Dai J,An X,Zhao J,Tian K,Wei S,Cheng Zeng X,Wu C,Xie Y

    更新日期:2016-04-04 00:00:00