Subnanometer-scale imaging of nanobio-interfaces by frequency modulation atomic force microscopy.

Abstract:

:Recently, there have been significant advancements in dynamic-mode atomic force microscopy (AFM) for biological applications. With frequency modulation AFM (FM-AFM), subnanometer-scale surface structures of biomolecules such as secondary structures of proteins, phosphate groups of DNAs, and lipid-ion complexes have been directly visualized. In addition, three-dimensional AFM (3D-AFM) has been developed by combining a high-resolution AFM technique with a 3D tip scanning method. This method enabled visualization of 3D distributions of water (i.e. hydration structures) with subnanometer-scale resolution on various biological molecules such as lipids, proteins, and DNAs. Furthermore, 3D-AFM also allows visualization of subnanometer-scale 3D distributions of flexible surface structures such as thermally fluctuating lipid headgroups. Such a direct local information at nano-bio interfaces can play a critical role in determining the atomic- or molecular-scale model to explain interfacial structures and functions. Here, we present an overview of these recent advancements in the dynamic-mode AFM techniques and their biological applications.

journal_name

Biochem Soc Trans

authors

Fukuma T

doi

10.1042/BST20200155

subject

Has Abstract

pub_date

2020-08-28 00:00:00

pages

1675-1682

issue

4

eissn

0300-5127

issn

1470-8752

pii

226045

journal_volume

48

pub_type

杂志文章
  • Infusion of plasma-derived mannan-binding lectin (MBL) into MBL-deficient humans.

    abstract::Our first experience of mannan-binding lectin (MBL)-replacement therapy was with a patient experiencing recurrent erythema multiforme associated with reactivation of herpes simplex virus; his erythematous eruptions could be controlled with infusions of fresh frozen plasma containing MBL, but not with plasma lacking MB...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/bst0310768

    authors: Valdimarsson H

    更新日期:2003-08-01 00:00:00

  • GRIF-1-kinesin-1 interactions: a confocal microscopy study.

    abstract::GRIF-1 [GABA(A) (gamma-aminobutyric acid(A)) receptor interacting factor-1] is a member of a coiled-coil family of proteins thought to function as adaptors in the anterograde trafficking of organelles utilizing the kinesin-1 motor proteins to synapses. To study in more detail the molecular interaction between GRIF-1 a...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0340048

    authors: Pozo K,Stephenson FA

    更新日期:2006-02-01 00:00:00

  • Imaging tumour heterogeneity of the consequences of a PKCα-substrate interaction in breast cancer patients.

    abstract::Breast cancer heterogeneity demands that prognostic models must be biologically driven and recent clinical evidence indicates that future prognostic signatures need evaluation in the context of early compared with late metastatic risk prediction. In pre-clinical studies, we and others have shown that various protein-p...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20140165

    authors: Weitsman G,Lawler K,Kelleher MT,Barrett JE,Barber PR,Shamil E,Festy F,Patel G,Fruhwirth GO,Huang L,Tullis ID,Woodman N,Ofo E,Ameer-Beg SM,Irshad S,Condeelis J,Gillett CE,Ellis PA,Vojnovic B,Coolen AC,Ng T

    更新日期:2014-12-01 00:00:00

  • Chloroplast lipid synthesis and lipid trafficking through ER-plastid membrane contact sites.

    abstract::Plant chloroplasts contain an intricate photosynthetic membrane system, the thylakoids, and are surrounded by two envelope membranes at which thylakoid lipids are assembled. The glycoglycerolipids mono- and digalactosyldiacylglycerol, and sulfoquinovosyldiacylglycerol as well as phosphatidylglycerol, are present in th...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20110752

    authors: Wang Z,Benning C

    更新日期:2012-04-01 00:00:00

  • The intriguing case of motor neuron disease: ALS and SMA come closer.

    abstract::MNDs (motor neuron diseases) form a heterogeneous group of pathologies characterized by the progressive degeneration of motor neurons. More and more genetic factors associated with MND encode proteins that have a function in RNA metabolism, suggesting that disturbed RNA metabolism could be a common underlying problem ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20130142

    authors: Achsel T,Barabino S,Cozzolino M,Carrì MT

    更新日期:2013-12-01 00:00:00

  • Networking in the endoplasmic reticulum.

    abstract::The network of the ER (endoplasmic reticulum) is set up by cytoskeletal control of the movement and remodelling of polygonal rings of tubules, bundles of tubules and cisternal regions. We have developed a new image analysis tool, persistency mapping, to understand the framework upon which the plant ER remodels. With t...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0380747

    authors: Griffing LR

    更新日期:2010-06-01 00:00:00

  • EPR experiments to elucidate the structure of the ready and unready states of the [NiFe] hydrogenase of Desulfovibrio vulgaris Miyazaki F.

    abstract::Isolation and purification of the [NiFe] hydrogenase of Desulfovibrio vulgaris Miyazaki F under aerobic conditions leads to a mixture of two states, Ni-A (unready) and Ni-B (ready). The two states are distinguished by different activation times and different EPR spectra. HYSCORE and ENDOR data and DFT calculations sho...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0330007

    authors: van Gastel M,Fichtner C,Neese F,Lubitz W

    更新日期:2005-02-01 00:00:00

  • Structure of artificial and natural VE-cadherin-based adherens junctions.

    abstract::In vascular endothelium, adherens junctions between endothelial cells are composed of VE-cadherin (vascular endothelial cadherin), an adhesive receptor that is crucial for the proper assembly of vascular structures and the maintenance of vascular integrity. As a classical cadherin, VE-cadherin links endothelial cells ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0360189

    authors: Taveau JC,Dubois M,Le Bihan O,Trépout S,Almagro S,Hewat E,Durmort C,Heyraud S,Gulino-Debrac D,Lambert O

    更新日期:2008-04-01 00:00:00

  • Initiation of meiotic recombination by formation of DNA double-strand breaks: mechanism and regulation.

    abstract::Homologous recombination is essential for accurate chromosome segregation during meiosis in most sexual organisms. Meiotic recombination is initiated by the formation of DSBs (DNA double-strand breaks) made by the Spo11 protein. We review here recent findings pertaining to protein-protein interactions important for DS...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0340523

    authors: Keeney S,Neale MJ

    更新日期:2006-08-01 00:00:00

  • New strategies for cartilage regeneration exploiting selected glycosaminoglycans to enhance cell fate determination.

    abstract::Most research strategies for cartilage tissue engineering use extended culture with complex media loaded with costly GFs (growth factors) to drive tissue assembly and yet they result in the production of cartilage with inferior mechanical and structural properties compared with the natural tissue. Recent evidence sugg...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20140031

    authors: Ayerst BI,Day AJ,Nurcombe V,Cool SM,Merry CL

    更新日期:2014-06-01 00:00:00

  • Investigating mitochondrial radical production using targeted probes.

    abstract::A range of mitochondria-targeted probe molecules that comprise a lipophilic cation covalently attached to an active moiety have been developed. The lipophilic cation causes the accumulation of these molecules into mitochondria, driven by the mitochondrial membrane potential. To date, we have targeted antioxidants, spi...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0321011

    authors: Murphy MP

    更新日期:2004-12-01 00:00:00

  • Oxidative modification of triacylglycerol-rich lipoproteins.

    abstract::Lipoprotein oxidation is thought to play a pivotal role in the evolution of atherosclerosis. Low-density lipoprotein (LDL) is the main source of oxidized lipid in the arterial wall. Oxidation of LDL alters its properties in a number of ways, making it more atherogenic, but oxidation of other lipoprotein classes may al...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0311062

    authors: Young IS,McFarlane C,McEneny J

    更新日期:2003-10-01 00:00:00

  • Responses of plants to iron, zinc and copper deficiencies.

    abstract::Iron, copper and zinc are essential metals for cell metabolism. Plants have evolved different schemes to efficiently mobilize low-solubility nutrients such as metals from their environment and to transport them between organs. In this review we highlight the divergences and convergences of the iron, copper and zinc up...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/bst0300766

    authors: Wintz H,Fox T,Vulpe C

    更新日期:2002-08-01 00:00:00

  • Post-translational modification of nucleoid-associated proteins: an extra layer of functional modulation in bacteria?

    abstract::Post-translational modification (PTM) of histones has been investigated in eukaryotes for years, revealing its widespread occurrence and functional importance. Many PTMs affect chromatin folding and gene activity. Only recently the occurrence of such modifications has been recognized in bacteria. However, it is unclea...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20180488

    authors: Dilweg IW,Dame RT

    更新日期:2018-10-19 00:00:00

  • Role of class II phosphoinositide 3-kinase in cell signalling.

    abstract::Although it is now well established that PI3K (phosphoinositide 3-kinase) is a key enzyme in several intracellular processes, there are still relatively few reports that precisely identify the specific isoforms of PI3K actually involved in such events. The lack of specific inhibitors has made it particularly difficult...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0350211

    authors: Falasca M,Maffucci T

    更新日期:2007-04-01 00:00:00

  • Nutritional status, metabolic responses to exercise and implications for performance.

    abstract::Diet can significantly influence exercise performance. Diet alone will not ensure successful performance in sport, but it plays a permissive role in allowing sustained intensive training with limited risk of illness and injury. Diet may also promote adaptations to training by stimulating synthesis and breakdown of the...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0311267

    authors: Maughan RJ

    更新日期:2003-12-01 00:00:00

  • Lectin-epithelial interactions in the human colon.

    abstract::Similar changes in glycosylation occur in the colonic epithelium in inflammatory conditions such as ulcerative colitis and Crohn's disease and also in colon cancer and precancerous adenomatous polyps. They include reduced length of O-glycans, reduced sulfation, increased sialylation and increased expression of oncofet...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0361482

    authors: Rhodes JM,Campbell BJ,Yu LG

    更新日期:2008-12-01 00:00:00

  • Molecular and atomic analysis of uranium complexes formed by three eco-types of Acidithiobacillus ferrooxidans.

    abstract::A combination of EXAFS, transmission electron microscopy and energy-dispersive X-ray was used to conduct a molecular and atomic analysis of the uranium complexes formed by Acidithiobacillus ferrooxidans. The results demonstrate that this bacterium accumulates uranium as phosphate compounds. We suggest that at toxic le...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/bst0300669

    authors: Merroun M,Hennig C,Rossberg A,Geipel G,Reich T,Selenska-Pobell S

    更新日期:2002-08-01 00:00:00

  • The quest for Factor VIIa exosite inhibitors.

    abstract::Coagulation proteases are involved in a highly orchestrated proteolytic cascade which is essential for haemostasis and blood clotting. In particular, the initiator of the coagulation cascade, Factor VIIa, binds to its cofactor, tissue factor, and its substrate, Factor X, via exosite interactions to form a ternary cata...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0350555

    authors: Amour A,Hutchinson J,Ruiz Avendaño AM,Ratcliffe S,Alvarez E,Martin J,Toomey JR,Senger S,Wolfendale M,Mooney C

    更新日期:2007-06-01 00:00:00

  • Getting through anaphase: splitting the sisters and beyond.

    abstract::Sister-chromatid cohesion, thought to be primarily mediated by the cohesin complex, is essential for chromosome segregation. The forces holding the two sisters resist the tendency of microtubules to prematurely pull sister DNAs apart and thereby prevent random segregation of the genome during mitosis, and consequent a...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0381639

    authors: Oliveira RA,Nasmyth K

    更新日期:2010-12-01 00:00:00

  • The role of TDP-43 in the pathogenesis of ALS and FTLD.

    abstract::TDP-43 (TAR DNA-binding protein 43) is an hnRNP (heterogeneous nuclear ribonucleoprotein) protein whose role in cellular processes has come to the forefront of neurodegeneration research after the observation that it is the main component of brain inclusions in ALS (amyotrophic lateral sclerosis) and FTLD (frontotempo...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20130186

    authors: Baralle M,Buratti E,Baralle FE

    更新日期:2013-12-01 00:00:00

  • Pathophysiology, pleiotrophy and paradigm shifts: genetic lessons from Parkinson's disease.

    abstract::PD (Parkinson's disease) is an aetiologically heterogeneous disorder characterized by a clinical phenotype consisting of resting tremor, rigidity and bradykinesia. Motor symptoms are associated with a progressive loss of dopaminergic neurons, with Lewy body inclusions within surviving neurons. Although heritability st...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0330586

    authors: Ross OA,Farrer MJ

    更新日期:2005-08-01 00:00:00

  • An additional glucose dehydrogenase from Sulfolobus solfataricus: fine-tuning of sugar degradation?

    abstract::Within the SulfoSYS (Sulfolobus Systems Biology) project, the effect of temperature on a metabolic network is investigated at the systems level. Sulfolobus solfataricus utilizes an unusual branched ED (Entner-Doudoroff) pathway for sugar degradation that is promiscuous for glucose and galactose. In the course of metab...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0390077

    authors: Haferkamp P,Kutschki S,Treichel J,Hemeda H,Sewczyk K,Hoffmann D,Zaparty M,Siebers B

    更新日期:2011-01-01 00:00:00

  • Application of a new method for the sensitive detection and quantification of acyl-CoA esters in Arabidopsis thaliana seedlings and mature leaves.

    abstract::We report a novel, highly sensitive and selective method for the detection and quantification of acyl-CoA esters from Arabidopsis thaliana. Extracted acyl-CoA esters were derived to their fluorescent acyl-etheno-CoA esters, separated by ion-paired reversed-phase HPLC, and detected fluorometrically. We report the compo...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Larson TR,Graham IA

    更新日期:2000-12-01 00:00:00

  • Modelling the peroxisomal carbon leak during lipid mobilization in Arabidopsis.

    abstract::Mutation of the ACN1 (acetate non-utilizing 1) locus of Arabidopsis results in altered acetate assimilation into gluconeogenic sugars and anapleurotic amino acids and leads to an overall depression in primary metabolite levels by approx. 50% during seedling development. Levels of acetyl-CoA were higher in acn1 compare...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0381230

    authors: Hooks MA,Allen E,Wattis JA

    更新日期:2010-10-01 00:00:00

  • Plasticity of the alpha4betadelta GABAA receptor.

    abstract::The GABAR [GABA(A) (gamma-aminobutyric acid type A) receptor], which mediates most inhibition in the brain, is regulated homoeostatically to maintain an optimal level of neuronal excitability. In particular, the alpha(4)betadelta subtype of the GABAR plays a pivotal role in this regulation. This receptor, which is exp...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0371378

    authors: Shen H,Smith SS

    更新日期:2009-12-01 00:00:00

  • The petite purple photosynthetic powerpack.

    abstract::Photoreaction centres are Nature's solar batteries. These nanometre-scale power producers are responsible for transducing the energy of sunlight into a form that can be used by biological systems, thereby powering most of the biological activity on the planet. Although to the layman the word 'photosynthesis' is usuall...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370400

    authors: Jones MR

    更新日期:2009-04-01 00:00:00

  • Twins studies as a model for studies on the interaction between smoking and genetic factors in the development of chronic bronchitis.

    abstract::Smoking is the main risk factor for COPD (chronic obstructive pulmonary disease) but genetic factors are of importance, since only a subset of smokers develops the disease. Sex differences have been suggested both in disease prevalence and response to environmental exposures. Furthermore, it has been shown that acquis...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370814

    authors: Svartengren M,Engström G,Anderson M,Hallberg J,Edula G,de Verdier MG,Dahlbäck M,Lindberg CM,Forsman-Semb K,Nihlén U,Fehniger TE

    更新日期:2009-08-01 00:00:00

  • Solution structures of complement components by X-ray and neutron scattering and analytical ultracentrifugation.

    abstract::The short consensus/complement repeat (SCR) domain (also known as the complement control protein domain) is the most abundant domain type in the complement system. Crystal and NMR structures for proteins that contain single and multiple SCR domains have now been published. These contain inter-SCR linkers of between th...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0300996

    authors: Perkins SJ,Gilbert HE,Aslam M,Hannan J,Holers VM,Goodship TH

    更新日期:2002-11-01 00:00:00

  • Unravelling chlorophyll catabolism in higher plants.

    abstract::Chlorophyll metabolism is probably the most visible manifestation of life. In spite of this, chlorophyll catabolism has remained something of a mystery until about 10 years ago. At that time, the first non-green tetrapyrrolic chlorophyll breakdown products from higher plants were discovered, and the structure of the f...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0300625

    authors: Kräutler B

    更新日期:2002-08-01 00:00:00