Post-translational modification of nucleoid-associated proteins: an extra layer of functional modulation in bacteria?

Abstract:

:Post-translational modification (PTM) of histones has been investigated in eukaryotes for years, revealing its widespread occurrence and functional importance. Many PTMs affect chromatin folding and gene activity. Only recently the occurrence of such modifications has been recognized in bacteria. However, it is unclear whether PTM of the bacterial counterparts of eukaryotic histones, nucleoid-associated proteins (NAPs), bears a comparable significance. Here, we scrutinize proteome mass spectrometry data for PTMs of the four most abundantly present NAPs in Escherichia coli (H-NS, HU, IHF and FIS). This approach allowed us to identify a total of 101 unique PTMs in the 11 independent proteomic studies covered in this review. Combined with structural and genetic information on these proteins, we describe potential effects of these modifications (perturbed DNA-binding, structural integrity or interaction with other proteins) on their function.

journal_name

Biochem Soc Trans

authors

Dilweg IW,Dame RT

doi

10.1042/BST20180488

subject

Has Abstract

pub_date

2018-10-19 00:00:00

pages

1381-1392

issue

5

eissn

0300-5127

issn

1470-8752

pii

BST20180488

journal_volume

46

pub_type

杂志文章,评审
  • Expression and properties of diacylglycerol acyltransferase from cell-suspension cultures of oilseed rape.

    abstract::The expression of diacylglycerol acyltransferase (DGAT, EC 2.3.1.20) with predicted molecular mass of 56.9. kDa (BnDGAT1) was examined using microspore-derived cell suspension cultures of oilseed rape (Brassica napus L. cv Jet Neuf). As well, a recombinant histidine-tagged N-terminal fragment of BnDGAT1 [BnDGAT1((1-11...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Weselake RJ,Nykiforuk CL,Laroche A,Patterson NA,Wiehler WB,Szarka SJ,Moloney MM,Tari LW,Derekh U

    更新日期:2000-12-01 00:00:00

  • The role of ResA in type II cytochrome c maturation.

    abstract::Numerous bacterial proteins involved in the nitrogen cycle, and other processes, require c-type haem as a cofactor. c-type cytochromes are formed by covalent attachment of haem to the conserved CXXCH motif. Here, we briefly review what is presently known about cytochrome c maturation in Bacillus subtilis with particul...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0330149

    authors: Crow A,Le Brun NE,Oubrie A

    更新日期:2005-02-01 00:00:00

  • Operational and technical considerations for microbial electrosynthesis.

    abstract::Extracellular electron transfer has, in one decade, emerged from an environmental phenomenon to an industrial process driver. On the one hand, electron transfer towards anodes leads to production of power or chemicals such as hydrogen, caustic soda and hydrogen peroxide. On the other hand, electron transfer from catho...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20120111

    authors: Desloover J,Arends JB,Hennebel T,Rabaey K

    更新日期:2012-12-01 00:00:00

  • Evaluating the utility of cardiomyocytes from human pluripotent stem cells for drug screening.

    abstract::Functional cardiomyocytes can now be derived routinely from hPSCs (human pluripotent stem cells), which collectively include embryonic and induced pluripotent stem cells. This technology presents new opportunities to develop pharmacologically relevant in vitro screens to detect cardiotoxicity, with a view to improving...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0381037

    authors: Dick E,Rajamohan D,Ronksley J,Denning C

    更新日期:2010-08-01 00:00:00

  • The emerging complexity of protein ubiquitination.

    abstract::Protein ubiquitination and protein phosphorylation are two fundamental regulatory post-translational modifications controlling intracellular signalling events. However, the ubiquitin system is vastly more complex compared with phosphorylation. This is due to the ability of ubiquitin to form polymers, i.e. ubiquitin ch...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370937

    authors: Komander D

    更新日期:2009-10-01 00:00:00

  • AMPK: a cellular energy sensor primarily regulated by AMP.

    abstract::AMPK (AMP-activated protein kinase) is a cellular energy sensor that monitors the ratio of AMP/ATP, and possibly also ADP/ATP, inside cells. Once activated by falling cellular energy levels, it acts to restore energy homoeostasis by switching on catabolic pathways that generate ATP, while switching off anabolic pathwa...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20130244

    authors: Gowans GJ,Hardie DG

    更新日期:2014-02-01 00:00:00

  • Physiological significance of L-amino acid sensing by extracellular Ca(2+)-sensing receptors.

    abstract::The calcium-sensing receptor is a multimodal, multimetabolic sensor that mediates the feedback-dependent control of whole body calcium metabolism. Remarkably, in addition to its role in Ca(2+)(o) (extracellular Ca(2+)) sensing, the CaR (Ca(2+)-sensing receptor) also responds to L-amino acids. L-amino acids appear to a...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0351195

    authors: Conigrave AD,Mun HC,Brennan SC

    更新日期:2007-11-01 00:00:00

  • Pushing with actin: from cells to pathogens.

    abstract::Actin polymerization is harnessed by cells to generate lamellipodia for movement and by a subclass of pathogens to facilitate invasion of their infected hosts. Using electron tomography (ET), we have shown that lamellipodia are formed via the generation of subsets of actin filaments joined by branch junctions. Image a...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20140184

    authors: Small JV

    更新日期:2015-02-01 00:00:00

  • Presenilins: how much more than γ-secretase?!

    abstract::AD (Alzheimer's disease) is a neurodegenerative disease characterized by a gradual loss of neurons and the accumulation of neurotoxic Aβ (amyloid β-peptide) and hyperphosphorylated tau. The discovery of mutations in three genes, PSEN1 (presenilin 1), PSEN2 (presenilin 2) and APP (amyloid precursor protein), in patient...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0381474

    authors: Coen K,Annaert W

    更新日期:2010-12-01 00:00:00

  • Thiol regulation of pro-inflammatory cytokines and innate immunity: protein S-thiolation as a novel molecular mechanism.

    abstract::Inflammation or inflammatory cytokines and oxidative stress have often been associated, and thiol antioxidants, particularly glutathione, have often been seen as possible anti-inflammatory mediators. However, whereas several cytokine inhibitors have been approved for drug use in chronic inflammatory diseases, this has...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0391268

    authors: Coppo L,Ghezzi P

    更新日期:2011-10-01 00:00:00

  • Modulation of signal-transduction pathways by chemopreventive agents.

    abstract::For a disease such as cancer, where a number of alterations to normal cell function accumulate over time, there are several opportunities to inhibit, slow down or even reverse the process. Many of the changes which drive the disease process occur in cell-signalling pathways that regulate proliferation and apoptosis. A...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0280007

    authors: Manson MM,Holloway KA,Howells LM,Hudson EA,Plummer SM,Squires MS,Prigent SA

    更新日期:2000-02-01 00:00:00

  • Investigating mitochondrial radical production using targeted probes.

    abstract::A range of mitochondria-targeted probe molecules that comprise a lipophilic cation covalently attached to an active moiety have been developed. The lipophilic cation causes the accumulation of these molecules into mitochondria, driven by the mitochondrial membrane potential. To date, we have targeted antioxidants, spi...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0321011

    authors: Murphy MP

    更新日期:2004-12-01 00:00:00

  • EML proteins in microtubule regulation and human disease.

    abstract::The EMLs are a conserved family of microtubule-associated proteins (MAPs). The founding member was discovered in sea urchins as a 77-kDa polypeptide that co-purified with microtubules. This protein, termed EMAP for echinoderm MAP, was the major non-tubulin component present in purified microtubule preparations made fr...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20160125

    authors: Fry AM,O'Regan L,Montgomery J,Adib R,Bayliss R

    更新日期:2016-10-15 00:00:00

  • New functions of the MHC class I-related Fc receptor, FcRn.

    abstract::FcRn was originally identified as the receptor responsible for IgG binding to the intestinal epithelium of neonatal rats and mice. FcRn transports IgG from milk across the intestinal epithelial cells of the suckling animal. Subsequently, FcRn was detected in tissues involved in the transmission of IgG from mother to f...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0250481

    authors: Simister NE,Jacobowitz Israel E,Ahouse JC,Story CM

    更新日期:1997-05-01 00:00:00

  • Coagulation cascade proteases and tissue fibrosis.

    abstract::Fibrotic disorders of the liver, kidney and lung are associated with excessive deposition of extracellular matrix proteins and ongoing coagulation-cascade activity. In addition to their critical roles in blood coagulation, thrombin and the immediate upstream coagulation proteases, Factors Xa and VIIa, influence numero...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/

    authors: Chambers RC,Laurent GJ

    更新日期:2002-04-01 00:00:00

  • The role of TDP-43 in the pathogenesis of ALS and FTLD.

    abstract::TDP-43 (TAR DNA-binding protein 43) is an hnRNP (heterogeneous nuclear ribonucleoprotein) protein whose role in cellular processes has come to the forefront of neurodegeneration research after the observation that it is the main component of brain inclusions in ALS (amyotrophic lateral sclerosis) and FTLD (frontotempo...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20130186

    authors: Baralle M,Buratti E,Baralle FE

    更新日期:2013-12-01 00:00:00

  • The chemoattractant decoy receptor D6 as a negative regulator of inflammatory responses.

    abstract::Other than signalling receptors sustaining leucocyte recruitment during inflammatory reactions, the chemokine system includes 'silent' receptors with distinct specificity and tissue distribution. The best-characterized molecule of this subgroup is the CC chemokine receptor D6, which binds most inflammatory CC chemokin...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0341014

    authors: Borroni EM,Buracchi C,de la Torre YM,Galliera E,Vecchi A,Bonecchi R,Mantovani A,Locati M

    更新日期:2006-12-01 00:00:00

  • Placental mTOR links maternal nutrient availability to fetal growth.

    abstract::The mTOR (mammalian target of rapamycin) signalling pathway functions as a nutrient sensor, both in individual cells and, more globally, in organs such as the fat body in Drosophila and the hypothalamus in the rat. The activity of placental amino acid transporters is decreased in IUGR (intrauterine growth restriction)...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370295

    authors: Roos S,Powell TL,Jansson T

    更新日期:2009-02-01 00:00:00

  • New aspects in cardiac L-type Ca2+ channel regulation.

    abstract::Cardiac excitation-contraction coupling is initiated with the influx of Ca2+ ions across the plasma membrane through voltage-gated L-type calcium channels. This process is tightly regulated by modulation of the channel open probability and channel localization. Protein kinase A (PKA) is found in close association with...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20190229

    authors: Pallien T,Klussmann E

    更新日期:2020-02-28 00:00:00

  • Specificity and selectivity in post-translational biotin addition.

    abstract::Biotin, which serves as a carboxyl group carrier in reactions catalyzed by biotin-dependent carboxylases, is essential for life in most organisms. To function in carboxylate transfer, the vitamin must be post-translationally linked to a specific lysine residue on the biotin carboxyl carrier (BCC) of a carboxylase in a...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20180425

    authors: Beckett D

    更新日期:2018-12-17 00:00:00

  • The Escherichia coli RNA degradosome: structure, function and relationship in other ribonucleolytic multienzyme complexes.

    abstract::mRNA instability is an intrinsic property that permits timely changes in gene expression by limiting the lifetime of a transcript. The RNase e of Escherichia coli is a single-strand-specific endo-nuclease involved in the processing of rRNA and the degradation of mRNA. A nucleolytic multi-enzyme complex now known as th...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:

    authors: Carpousis AJ

    更新日期:2002-04-01 00:00:00

  • Role of PTEN/PI3K pathway in endothelial cells.

    abstract::PTEN (phosphatase and tensin homologue deleted on chromosome 10) is an important tumour-suppressor gene that encodes a 3-phosphatase. The major substrate of PTEN is PIP(3) (phosphatidylinositol 3,4,5-trisphosphate) generated by the action of PI3Ks (phosphoinositide 3-kinases). Hereditary mutation of PTEN causes tumour...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST0350172

    authors: Suzuki A,Hamada K,Sasaki T,Mak TW,Nakano T

    更新日期:2007-04-01 00:00:00

  • IRES-dependent regulation of FGF-2 mRNA translation in pathophysiological conditions in the mouse.

    abstract::The mRNA coding for FGF-2 (fibroblast growth factor 2), a major angiogenic factor, is translated by an IRES (internal ribosome entry site)-dependent mechanism. We have studied the role of the IRES in the regulation of FGF-2 expression in vivo, under pathophysiological conditions, by creating transgenic mice lines expr...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20060017

    authors: Gonzalez-Herrera IG,Prado-Lourenco L,Teshima-Kondo S,Kondo K,Cabon F,Arnal JF,Bayard F,Prats AC

    更新日期:2006-02-01 00:00:00

  • Dietary meat, endogenous nitrosation and colorectal cancer.

    abstract::Colorectal cancer is the third most common cancer in developed countries such as the U.K., but incidence rates around the world vary approx. 20-fold. Diet is thought to be a key factor determining risk: red and processed meat, but not white meat or fish, are associated with an increased risk of colorectal cancer. The ...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0351355

    authors: Kuhnle GG,Bingham SA

    更新日期:2007-11-01 00:00:00

  • Twins studies as a model for studies on the interaction between smoking and genetic factors in the development of chronic bronchitis.

    abstract::Smoking is the main risk factor for COPD (chronic obstructive pulmonary disease) but genetic factors are of importance, since only a subset of smokers develops the disease. Sex differences have been suggested both in disease prevalence and response to environmental exposures. Furthermore, it has been shown that acquis...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST0370814

    authors: Svartengren M,Engström G,Anderson M,Hallberg J,Edula G,de Verdier MG,Dahlbäck M,Lindberg CM,Forsman-Semb K,Nihlén U,Fehniger TE

    更新日期:2009-08-01 00:00:00

  • Immunoglobulin-binding domains: Protein L from Peptostreptococcus magnus.

    abstract::Protein L is a multidomain cell-wall protein isolated from Peptostreptococcus magnus. It belongs to a group of proteins that contain repeated domains that are able to bind to Igs without stimulating an immune response, the most characterized of this group being Protein A ( Staphylococcus aureus ) and Protein G ( Strep...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/bst0310716

    authors: Housden NG,Harrison S,Roberts SE,Beckingham JA,Graille M,Stura E,Gore MG

    更新日期:2003-06-01 00:00:00

  • Alkalithermophiles.

    abstract::Alkalithermophiles are an exciting subset of extremophilic organisms and represent extremophiles that are adapted to two extreme conditions, i.e. to a combination of alkaline and thermobiotic growth conditions. Among the anaerobic alkalithermophiles are representatives of both Bacteria and Archaea within a wide variet...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/bst0320193

    authors: Wiegel J,Kevbrin VV

    更新日期:2004-04-01 00:00:00

  • Expression, purification and properties of multidrug efflux proteins.

    abstract::A general strategy is described for the amplified expression, purification and characterization in Escherichia coli of multidrug efflux proteins from Staphylococcus aureus, Bacillus subtilis, Methanococcus janaschii and E. coli. They all catalyse drug/H(+) antiport of substrates such as quinolones and ethidium and exe...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:

    authors: Henderson PJ,Hoyle CK,Ward A

    更新日期:2000-01-01 00:00:00

  • Mechanisms of LRRK2-dependent neurodegeneration: role of enzymatic activity and protein aggregation.

    abstract::Mutations in the leucine-rich repeat kinase 2 (LRRK2) gene are the most common cause of familial Parkinson's disease (PD) with autosomal dominant inheritance. Accordingly, LRRK2 has emerged as a promising therapeutic target for disease modification in PD. Since the first discovery of LRRK2 mutations some 12 years ago,...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章,评审

    doi:10.1042/BST20160264

    authors: Islam MS,Moore DJ

    更新日期:2017-02-08 00:00:00

  • Chromosome positioning is largely unaffected in lymphoblastoid cell lines containing emerin or A-type lamin mutations.

    abstract::Gene-poor human chromosomes are reproducibly found at the nuclear periphery in proliferating cells. There are a number of inner nuclear envelope proteins that may have roles in chromosome location and anchorage, e.g. emerin and A-type lamins. In the last decade, a number of diseases associated with tissue degeneration...

    journal_title:Biochemical Society transactions

    pub_type: 杂志文章

    doi:10.1042/BST20051438

    authors: Meaburn KJ,Levy N,Toniolo D,Bridger JM

    更新日期:2005-12-01 00:00:00