Aβ(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage.

Abstract:

:Formation of amyloid-beta (Aβ) oligomer pores in the membrane of neurons has been proposed to explain neurotoxicity in Alzheimer's disease (AD). Here, we present the three-dimensional structure of an Aβ oligomer formed in a membrane mimicking environment, namely an Aβ(1-42) tetramer, which comprises a six stranded β-sheet core. The two faces of the β-sheet core are hydrophobic and surrounded by the membrane-mimicking environment while the edges are hydrophilic and solvent-exposed. By increasing the concentration of Aβ(1-42) in the sample, Aβ(1-42) octamers are also formed, made by two Aβ(1-42) tetramers facing each other forming a β-sandwich structure. Notably, Aβ(1-42) tetramers and octamers inserted into lipid bilayers as well-defined pores. To establish oligomer structure-membrane activity relationships, molecular dynamics simulations were carried out. These studies revealed a mechanism of membrane disruption in which water permeation occurred through lipid-stabilized pores mediated by the hydrophilic residues located on the core β-sheets edges of the oligomers.

journal_name

Nat Commun

journal_title

Nature communications

authors

Ciudad S,Puig E,Botzanowski T,Meigooni M,Arango AS,Do J,Mayzel M,Bayoumi M,Chaignepain S,Maglia G,Cianferani S,Orekhov V,Tajkhorshid E,Bardiaux B,Carulla N

doi

10.1038/s41467-020-16566-1

subject

Has Abstract

pub_date

2020-06-15 00:00:00

pages

3014

issue

1

issn

2041-1723

pii

10.1038/s41467-020-16566-1

journal_volume

11

pub_type

杂志文章
  • HDAC3 maintains oocyte meiosis arrest by repressing amphiregulin expression before the LH surge.

    abstract::It is known that granulosa cells (GCs) mediate gonadotropin-induced oocyte meiosis resumption by releasing EGF-like factors in mammals, however, the detailed molecular mechanisms remain unclear. Here, we demonstrate that luteinizing hormone (LH) surge-induced histone deacetylase 3 (HDAC3) downregulation in GCs is esse...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13671-8

    authors: Wang H,Cai H,Wang X,Zhang M,Liu B,Chen Z,Yang T,Fang J,Zhang Y,Liu W,Han J,Guo Q,Zhang H,Wang H,Xia G,Wang C

    更新日期:2019-12-16 00:00:00

  • SPA70 is a potent antagonist of human pregnane X receptor.

    abstract::Many drugs bind to and activate human pregnane X receptor (hPXR) to upregulate drug-metabolizing enzymes, resulting in decreased drug efficacy and increased resistance. This suggests that hPXR antagonists have therapeutic value. Here we report that SPA70 is a potent and selective hPXR antagonist. SPA70 inhibits hPXR i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00780-5

    authors: Lin W,Wang YM,Chai SC,Lv L,Zheng J,Wu J,Zhang Q,Wang YD,Griffin PR,Chen T

    更新日期:2017-09-29 00:00:00

  • Structural basis for ELL2 and AFF4 activation of HIV-1 proviral transcription.

    abstract::The intrinsically disordered scaffold proteins AFF1/4 and the transcription elongation factors ELL1/2 are core components of the super elongation complex required for HIV-1 proviral transcription. Here we report the 2.0-Å resolution crystal structure of the human ELL2 C-terminal domain bound to its 50-residue binding ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14076

    authors: Qi S,Li Z,Schulze-Gahmen U,Stjepanovic G,Zhou Q,Hurley JH

    更新日期:2017-01-30 00:00:00

  • Author Correction: EpCAM-dependent extracellular vesicles from intestinal epithelial cells maintain intestinal tract immune balance.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-020-17430-y

    authors: Jiang L,Shen Y,Guo D,Yang D,Liu J,Fei X,Yang Y,Zhang B,Lin Z,Yang F,Wang X,Wang K,Wang J,Cai Z

    更新日期:2020-07-16 00:00:00

  • A selective inhibitor of mitofusin 1-βIIPKC association improves heart failure outcome in rats.

    abstract::We previously demonstrated that beta II protein kinase C (βIIPKC) activity is elevated in failing hearts and contributes to this pathology. Here we report that βIIPKC accumulates on the mitochondrial outer membrane and phosphorylates mitofusin 1 (Mfn1) at serine 86. Mfn1 phosphorylation results in partial loss of its ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08276-6

    authors: Ferreira JCB,Campos JC,Qvit N,Qi X,Bozi LHM,Bechara LRG,Lima VM,Queliconi BB,Disatnik MH,Dourado PMM,Kowaltowski AJ,Mochly-Rosen D

    更新日期:2019-01-18 00:00:00

  • Ultralow-threshold multiphoton-pumped lasing from colloidal nanoplatelets in solution.

    abstract::Although multiphoton-pumped lasing from a solution of chromophores is important in the emerging fields of nonlinear optofluidics and bio-photonics, conventionally used organic dyes are often rendered unsuitable because of relatively small multiphoton absorption cross-sections and low photostability. Here, we demonstra...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9513

    authors: Li M,Zhi M,Zhu H,Wu WY,Xu QH,Jhon MH,Chan Y

    更新日期:2015-09-30 00:00:00

  • Graphene etching on SiC grains as a path to interstellar polycyclic aromatic hydrocarbons formation.

    abstract::Polycyclic aromatic hydrocarbons as well as other organic molecules appear among the most abundant observed species in interstellar space and are key molecules to understanding the prebiotic roots of life. However, their existence and abundance in space remain a puzzle. Here we present a new top-down route to form pol...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4054

    authors: Merino P,Švec M,Martinez JI,Jelinek P,Lacovig P,Dalmiglio M,Lizzit S,Soukiassian P,Cernicharo J,Martin-Gago JA

    更新日期:2014-01-01 00:00:00

  • Mapping ecologically relevant social behaviours by gene knockout in wild mice.

    abstract::The laboratory mouse serves as an important model system for studying gene, brain and behavioural interactions. Powerful methods of gene targeting have helped to decipher gene-function associations in human diseases. Yet, the laboratory mouse, obtained after decades of human-driven artificial selection, inbreeding, an...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5569

    authors: Chalfin L,Dayan M,Levy DR,Austad SN,Miller RA,Iraqi FA,Dulac C,Kimchi T

    更新日期:2014-08-05 00:00:00

  • Memory phototransistors based on exponential-association photoelectric conversion law.

    abstract::Ultraweak light detectors have wide-ranging important applications such as astronomical observation, remote sensing, laser ranging, and night vision. Current commercial ultraweak light detectors are commonly based on a photomultiplier tube or an avalanche photodiode, and they are incompatible with microelectronic devi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09206-w

    authors: Shao Z,Jiang T,Zhang X,Zhang X,Wu X,Xia F,Xiong S,Lee ST,Jie J

    更新日期:2019-03-20 00:00:00

  • Microring resonator-assisted Fourier transform spectrometer with enhanced resolution and large bandwidth in single chip solution.

    abstract::Single chip integrated spectrometers are critical to bring chemical and biological sensing, spectroscopy, and spectral imaging into robust, compact and cost-effective devices. Existing on-chip spectrometer approaches fail to realize both high resolution and broad band. Here we demonstrate a microring resonator-assiste...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10282-1

    authors: Zheng SN,Zou J,Cai H,Song JF,Chin LK,Liu PY,Lin ZP,Kwong DL,Liu AQ

    更新日期:2019-05-28 00:00:00

  • Transparent and attachable ionic communicators based on self-cleanable triboelectric nanogenerators.

    abstract::Human-machine interfaces have benefited from the advent of wireless sensor networks and the internet of things, but rely on wearable/attachable electronics exhibiting stretchability, biocompatibility, and transmittance. Limited by weight and volume, wearable devices should be energy efficient and even self-powered. He...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03954-x

    authors: Lee Y,Cha SH,Kim YW,Choi D,Sun JY

    更新日期:2018-05-04 00:00:00

  • Influence of Tibetan Plateau snow cover on East Asian atmospheric circulation at medium-range time scales.

    abstract::The responses of atmospheric variability to Tibetan Plateau (TP) snow cover (TPSC) at seasonal, interannual and decadal time scales have been extensively investigated. However, the atmospheric response to faster subseasonal variability of TPSC has been largely ignored. Here, we show that the subseasonal variability of...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06762-5

    authors: Li W,Guo W,Qiu B,Xue Y,Hsu PC,Wei J

    更新日期:2018-10-12 00:00:00

  • Automated acquisition of explainable knowledge from unannotated histopathology images.

    abstract::Deep learning algorithms have been successfully used in medical image classification. In the next stage, the technology of acquiring explainable knowledge from medical images is highly desired. Here we show that deep learning algorithm enables automated acquisition of explainable features from diagnostic annotation-fr...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13647-8

    authors: Yamamoto Y,Tsuzuki T,Akatsuka J,Ueki M,Morikawa H,Numata Y,Takahara T,Tsuyuki T,Tsutsumi K,Nakazawa R,Shimizu A,Maeda I,Tsuchiya S,Kanno H,Kondo Y,Fukumoto M,Tamiya G,Ueda N,Kimura G

    更新日期:2019-12-18 00:00:00

  • A unified neurocognitive model of semantics language social behaviour and face recognition in semantic dementia.

    abstract::The anterior temporal lobes (ATL) have become a key brain region of interest in cognitive neuroscience founded upon neuropsychological investigations of semantic dementia (SD). The purposes of this investigation are to generate a single unified model that captures the known cognitive-behavioural variations in SD and m...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16089-9

    authors: Ding J,Chen K,Liu H,Huang L,Chen Y,Lv Y,Yang Q,Guo Q,Han Z,Lambon Ralph MA

    更新日期:2020-05-22 00:00:00

  • History-based action selection bias in posterior parietal cortex.

    abstract::Making decisions based on choice-outcome history is a crucial, adaptive ability in life. However, the neural circuit mechanisms underlying history-dependent decision-making are poorly understood. In particular, history-related signals have been found in many brain areas during various decision-making tasks, but the ca...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01356-z

    authors: Hwang EJ,Dahlen JE,Mukundan M,Komiyama T

    更新日期:2017-11-01 00:00:00

  • Understanding crystallization pathways leading to manganese oxide polymorph formation.

    abstract::Hydrothermal synthesis is challenging in metal oxide systems with diverse polymorphism, as reaction products are often sensitive to subtle variations in synthesis parameters. This sensitivity is rooted in the non-equilibrium nature of low-temperature crystallization, where competition between different metastable phas...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04917-y

    authors: Chen BR,Sun W,Kitchaev DA,Mangum JS,Thampy V,Garten LM,Ginley DS,Gorman BP,Stone KH,Ceder G,Toney MF,Schelhas LT

    更新日期:2018-06-29 00:00:00

  • Benchmarking monolayer MoS2 and WS2 field-effect transistors.

    abstract::Here we benchmark device-to-device variation in field-effect transistors (FETs) based on monolayer MoS2 and WS2 films grown using metal-organic chemical vapor deposition process. Our study involves 230 MoS2 FETs and 160 WS2 FETs with channel lengths ranging from 5 μm down to 100 nm. We use statistical measures to eval...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20732-w

    authors: Sebastian A,Pendurthi R,Choudhury TH,Redwing JM,Das S

    更新日期:2021-01-29 00:00:00

  • A region-resolved mucosa proteome of the human stomach.

    abstract::The human gastric mucosa is the most active layer of the stomach wall, involved in food digestion, metabolic processes and gastric carcinogenesis. Anatomically, the human stomach is divided into seven regions, but the protein basis for cellular specialization is not well understood. Here we present a global analysis o...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07960-x

    authors: Ni X,Tan Z,Ding C,Zhang C,Song L,Yang S,Liu M,Jia R,Zhao C,Song L,Liu W,Zhou Q,Gong T,Li X,Tai Y,Zhu W,Shi T,Wang Y,Xu J,Zhen B,Qin J

    更新日期:2019-01-03 00:00:00

  • P38α/JNK signaling restrains erythropoiesis by suppressing Ezh2-mediated epigenetic silencing of Bim.

    abstract::While erythropoietin (EPO) constitutes the major treatment for anemia, a range of anemic disorders remain resistant to EPO treatment. The need for alternative therapeutic strategies requires the identification of mechanisms that physiologically restrain erythropoiesis. Here we show that P38α restrains erythropoiesis i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05955-2

    authors: Hu P,Nebreda AR,Hanenberg H,Kinnebrew GH,Ivan M,Yoder MC,Filippi MD,Broxmeyer HE,Kapur R

    更新日期:2018-08-29 00:00:00

  • Clustering of arc volcanoes caused by temperature perturbations in the back-arc mantle.

    abstract::Clustering of arc volcanoes in subduction zones indicates along-arc variation in the physical condition of the underlying mantle where majority of arc magmas are generated. The sub-arc mantle is brought in from the back-arc largely by slab-driven mantle wedge flow. Dynamic processes in the back-arc, such as small-scal...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15753

    authors: Lee C,Wada I

    更新日期:2017-06-29 00:00:00

  • Inactivation of NF-κB2 (p52) restrains hepatic glucagon response via preserving PDE4B induction.

    abstract::Glucagon promotes hepatic gluconeogenesis and maintains whole-body glucose levels during fasting. The regulatory factors that are involved in fasting glucagon response are not well understood. Here we report a role of p52, a key activator of the noncanonical nuclear factor-kappaB signaling, in hepatic glucagon respons...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12351-x

    authors: Zhang WS,Pan A,Zhang X,Ying A,Ma G,Liu BL,Qi LW,Liu Q,Li P

    更新日期:2019-09-20 00:00:00

  • Compositional boundary layers trigger liquid unmixing in a basaltic crystal mush.

    abstract::The separation of immiscible liquids has significant implications for magma evolution and the formation of magmatic ore deposits. We combine high-resolution imaging and electron probe microanalysis with the first use of atom probe tomography on tholeiitic basaltic glass from Hawaii, the Snake River Plain, and Iceland,...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12694-5

    authors: Honour VC,Holness MB,Charlier B,Piazolo SC,Namur O,Prosa TJ,Martin I,Helz RT,Maclennan J,Jean MM

    更新日期:2019-10-23 00:00:00

  • Oxidation of difluorocarbene and subsequent trifluoromethoxylation.

    abstract::As a versatile intermediate, difluorocarbene is an electron-deficient transient species, meaning that its oxidation would be challenging. Herein we show that the oxidation of difluorocarbene could occur smoothly to generate carbonyl fluoride. The oxidation process is confirmed by successful trifluoromethoxylation, 18O...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13359-z

    authors: Yu J,Lin JH,Yu D,Du R,Xiao JC

    更新日期:2019-11-25 00:00:00

  • Chromatin remodeller Fun30Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation.

    abstract::Previous studies have revealed that nucleosomes impede elongation of RNA polymerase II (RNAPII). Recent observations suggest a role for ATP-dependent chromatin remodellers in modulating this process, but direct in vivo evidence for this is unknown. Here using fission yeast, we identify Fun30Fft3 as a chromatin remodel...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14527

    authors: Lee J,Choi ES,Seo HD,Kang K,Gilmore JM,Florens L,Washburn MP,Choe J,Workman JL,Lee D

    更新日期:2017-02-20 00:00:00

  • Hydrothermal vent fields and chemosynthetic biota on the world's deepest seafloor spreading centre.

    abstract::The Mid-Cayman spreading centre is an ultraslow-spreading ridge in the Caribbean Sea. Its extreme depth and geographic isolation from other mid-ocean ridges offer insights into the effects of pressure on hydrothermal venting, and the biogeography of vent fauna. Here we report the discovery of two hydrothermal vent fie...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1636

    authors: Connelly DP,Copley JT,Murton BJ,Stansfield K,Tyler PA,German CR,Van Dover CL,Amon D,Furlong M,Grindlay N,Hayman N,Hühnerbach V,Judge M,Le Bas T,McPhail S,Meier A,Nakamura K,Nye V,Pebody M,Pedersen RB,Plouviez S,

    更新日期:2012-01-10 00:00:00

  • 4D Visualization of replication foci in mammalian cells corresponding to individual replicons.

    abstract::Since the pioneering proposal of the replicon model of DNA replication 50 years ago, the predicted replicons have not been identified and quantified at the cellular level. Here, we combine conventional and super-resolution microscopy of replication sites in live and fixed cells with computational image analysis. We co...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11231

    authors: Chagin VO,Casas-Delucchi CS,Reinhart M,Schermelleh L,Markaki Y,Maiser A,Bolius JJ,Bensimon A,Fillies M,Domaing P,Rozanov YM,Leonhardt H,Cardoso MC

    更新日期:2016-04-07 00:00:00

  • Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase.

    abstract::Aerobic methane oxidation is catalyzed by particulate methane monooxygenase (pMMO), a copper-dependent, membrane metalloenzyme composed of subunits PmoA, PmoB, and PmoC. Characterization of the copper active site has been limited by challenges in spectroscopic analysis stemming from the presence of multiple copper bin...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10590-6

    authors: Ro SY,Schachner LF,Koo CW,Purohit R,Remis JP,Kenney GE,Liauw BW,Thomas PM,Patrie SM,Kelleher NL,Rosenzweig AC

    更新日期:2019-06-17 00:00:00

  • Publisher Correction: Z-ring membrane anchors associate with cell wall synthases to initiate bacterial cell division.

    abstract::The original version of this Article contained errors in Figures 1 and 3. In Fig. 1b, the label 'IP-PBP3' above the second of the three blots incorrectly read 'IP-PBP1B'. In Fig. 3b, the label 'PBP1B' under the first bar of each chart incorrectly read 'PBP1A'. These errors have been corrected in both the PDF and HTML ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-019-08410-y

    authors: Pazos M,Peters K,Casanova M,Palacios P,VanNieuwenhze M,Breukink E,Vicente M,Vollmer W

    更新日期:2019-01-30 00:00:00

  • Trade-off in membrane distillation with monolithic omniphobic membranes.

    abstract::Omniphobic membranes are attractive for membrane distillation (MD) because of their superior wetting resistance. However, a design framework for MD membrane remains incomplete, due to the complexity of omniphobic membrane fabrication and the lack of fundamental relationship between wetting resistance and water vapor p...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11209-6

    authors: Wang W,Du X,Vahabi H,Zhao S,Yin Y,Kota AK,Tong T

    更新日期:2019-07-19 00:00:00

  • Biased localization of actin binding proteins by actin filament conformation.

    abstract::The assembly of actin filaments into distinct cytoskeletal structures plays a critical role in cell physiology, but how proteins localize differentially to these structures within a shared cytoplasm remains unclear. Here, we show that the actin-binding domains of accessory proteins can be sensitive to filament conform...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19768-9

    authors: Harris AR,Jreij P,Belardi B,Joffe AM,Bausch AR,Fletcher DA

    更新日期:2020-11-25 00:00:00