Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase.

Abstract:

:Aerobic methane oxidation is catalyzed by particulate methane monooxygenase (pMMO), a copper-dependent, membrane metalloenzyme composed of subunits PmoA, PmoB, and PmoC. Characterization of the copper active site has been limited by challenges in spectroscopic analysis stemming from the presence of multiple copper binding sites, effects of detergent solubilization on activity and crystal structures, and the lack of a heterologous expression system. Here we utilize nanodiscs coupled with native top-down mass spectrometry (nTDMS) to determine the copper stoichiometry in each pMMO subunit and to detect post-translational modifications (PTMs). These results indicate the presence of a mononuclear copper center in both PmoB and PmoC. pMMO-nanodisc complexes with a higher stoichiometry of copper-bound PmoC exhibit increased activity, suggesting that the PmoC copper site plays a role in methane oxidation activity. These results provide key insights into the pMMO copper centers and demonstrate the ability of nTDMS to characterize complex membrane-bound metalloenzymes.

journal_name

Nat Commun

journal_title

Nature communications

authors

Ro SY,Schachner LF,Koo CW,Purohit R,Remis JP,Kenney GE,Liauw BW,Thomas PM,Patrie SM,Kelleher NL,Rosenzweig AC

doi

10.1038/s41467-019-10590-6

subject

Has Abstract

pub_date

2019-06-17 00:00:00

pages

2675

issue

1

issn

2041-1723

pii

10.1038/s41467-019-10590-6

journal_volume

10

pub_type

杂志文章
  • A clinically applicable deep-learning model for detecting intracranial aneurysm in computed tomography angiography images.

    abstract::Intracranial aneurysm is a common life-threatening disease. Computed tomography angiography is recommended as the standard diagnosis tool; yet, interpretation can be time-consuming and challenging. We present a specific deep-learning-based model trained on 1,177 digital subtraction angiography verified bone-removal co...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19527-w

    authors: Shi Z,Miao C,Schoepf UJ,Savage RH,Dargis DM,Pan C,Chai X,Li XL,Xia S,Zhang X,Gu Y,Zhang Y,Hu B,Xu W,Zhou C,Luo S,Wang H,Mao L,Liang K,Wen L,Zhou L,Yu Y,Lu GM,Zhang LJ

    更新日期:2020-11-30 00:00:00

  • Author Correction: Interplay of protein corona and immune cells controls blood residency of liposomes.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-020-15500-9

    authors: Giulimondi F,Digiacomo L,Pozzi D,Palchetti S,Vulpis E,Capriotti AL,Chiozzi RZ,Laganà A,Amenitsch H,Masuelli L,Peruzzi G,Mahmoudi M,Screpanti I,Zingoni A,Caracciolo G

    更新日期:2020-03-31 00:00:00

  • Genome-wide rare variant analysis for thousands of phenotypes in over 70,000 exomes from two cohorts.

    abstract::Understanding the impact of rare variants is essential to understanding human health. We analyze rare (MAF < 0.1%) variants against 4264 phenotypes in 49,960 exome-sequenced individuals from the UK Biobank and 1934 phenotypes (1821 overlapping with UK Biobank) in 21,866 members of the Healthy Nevada Project (HNP) coho...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14288-y

    authors: Cirulli ET,White S,Read RW,Elhanan G,Metcalf WJ,Tanudjaja F,Fath DM,Sandoval E,Isaksson M,Schlauch KA,Grzymski JJ,Lu JT,Washington NL

    更新日期:2020-01-28 00:00:00

  • Ion antiport accelerates photosynthetic acclimation in fluctuating light environments.

    abstract::Many photosynthetic organisms globally, including crops, forests and algae, must grow in environments where the availability of light energy fluctuates dramatically. How photosynthesis maintains high efficiency despite such fluctuations in its energy source remains poorly understood. Here we show that Arabidopsis thal...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6439

    authors: Armbruster U,Carrillo LR,Venema K,Pavlovic L,Schmidtmann E,Kornfeld A,Jahns P,Berry JA,Kramer DM,Jonikas MC

    更新日期:2014-11-13 00:00:00

  • In situ atomic-scale observation of oxidation and decomposition processes in nanocrystalline alloys.

    abstract::Oxygen contamination is a problem which inevitably occurs during severe plastic deformation of metallic powders by exposure to air. Although this contamination can change the morphology and properties of the consolidated materials, there is a lack of detailed information about the behavior of oxygen in nanocrystalline...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03288-8

    authors: Guo J,Haberfehlner G,Rosalie J,Li L,Duarte MJ,Kothleitner G,Dehm G,He Y,Pippan R,Zhang Z

    更新日期:2018-03-05 00:00:00

  • Dual loss of human POLQ and LIG4 abolishes random integration.

    abstract::Homologous recombination-mediated gene targeting has greatly contributed to genetic analysis in a wide range of species, but is highly inefficient in human cells because of overwhelmingly frequent random integration events, whose molecular mechanism remains elusive. Here we show that DNA polymerase θ, despite its mino...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms16112

    authors: Saito S,Maeda R,Adachi N

    更新日期:2017-07-11 00:00:00

  • Complement C1q-induced activation of β-catenin signalling causes hypertensive arterial remodelling.

    abstract::Hypertension induces structural remodelling of arteries, which leads to arteriosclerosis and end-organ damage. Hyperplasia of vascular smooth muscle cells (VSMCs) and infiltration of immune cells are the hallmark of hypertensive arterial remodelling. However, the precise molecular mechanisms of arterial remodelling re...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7241

    authors: Sumida T,Naito AT,Nomura S,Nakagawa A,Higo T,Hashimoto A,Okada K,Sakai T,Ito M,Yamaguchi T,Oka T,Akazawa H,Lee JK,Minamino T,Offermanns S,Noda T,Botto M,Kobayashi Y,Morita H,Manabe I,Nagai T,Shiojima I,Komuro

    更新日期:2015-02-26 00:00:00

  • Cholinergic neural activity directs retinal layer-specific angiogenesis and blood retinal barrier formation.

    abstract::Blood vessels in the central nervous system (CNS) develop unique features, but the contribution of CNS neurons to regulating those features is not fully understood. We report that inhibiting spontaneous cholinergic activity or reducing starburst amacrine cell numbers prevents invasion of endothelial cells into the dee...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10219-8

    authors: Weiner GA,Shah SH,Angelopoulos CM,Bartakova AB,Pulido RS,Murphy A,Nudleman E,Daneman R,Goldberg JL

    更新日期:2019-06-06 00:00:00

  • DNA-enabled rational design of fluorescence-Raman bimodal nanoprobes for cancer imaging and therapy.

    abstract::Recently, surface-enhanced Raman scattering nanoprobes have shown tremendous potential in oncological imaging owing to the high sensitivity and specificity of their fingerprint-like spectra. As current Raman scanners rely on a slow, point-by-point spectrum acquisition, there is an unmet need for faster imaging to cove...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09173-2

    authors: Pal S,Ray A,Andreou C,Zhou Y,Rakshit T,Wlodarczyk M,Maeda M,Toledo-Crow R,Berisha N,Yang J,Hsu HT,Oseledchyk A,Mondal J,Zou S,Kircher MF

    更新日期:2019-04-26 00:00:00

  • Quantitative live cell imaging reveals influenza virus manipulation of Rab11A transport through reduced dynein association.

    abstract::Assembly of infectious influenza A viruses (IAV) is a complex process involving transport from the nucleus to the plasma membrane. Rab11A-containing recycling endosomes have been identified as a platform for intracellular transport of viral RNA (vRNA). Here, using high spatiotemporal resolution light-sheet microscopy ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13838-3

    authors: Bhagwat AR,Le Sage V,Nturibi E,Kulej K,Jones J,Guo M,Tae Kim E,Garcia BA,Weitzman MD,Shroff H,Lakdawala SS

    更新日期:2020-01-07 00:00:00

  • Cervical epithelial damage promotes Ureaplasma parvum ascending infection, intrauterine inflammation and preterm birth induction in mice.

    abstract::Around 40% of preterm births are attributed to ascending intrauterine infection, and Ureaplasma parvum (UP) is commonly isolated in these cases. Here we present a mouse model of ascending UP infection that resembles human disease, using vaginal inoculation combined with mild cervical injury induced by a common spermic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-14089-y

    authors: Pavlidis I,Spiller OB,Sammut Demarco G,MacPherson H,Howie SEM,Norman JE,Stock SJ

    更新日期:2020-01-10 00:00:00

  • Diffusion-limited reactions in dynamic heterogeneous media.

    abstract::Most biochemical reactions in living cells rely on diffusive search for target molecules or regions in a heterogeneous overcrowded cytoplasmic medium. Rapid rearrangements of the medium constantly change the effective diffusivity felt locally by a diffusing particle and thus impact the distribution of the first-passag...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06610-6

    authors: Lanoiselée Y,Moutal N,Grebenkov DS

    更新日期:2018-10-23 00:00:00

  • Crystal structures of ryanodine receptor SPRY1 and tandem-repeat domains reveal a critical FKBP12 binding determinant.

    abstract::Ryanodine receptors (RyRs) form calcium release channels located in the membranes of the sarcoplasmic and endoplasmic reticulum. RyRs play a major role in excitation-contraction coupling and other Ca(2+)-dependent signalling events, and consist of several globular domains that together form a large assembly. Here we d...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8947

    authors: Yuchi Z,Yuen SM,Lau K,Underhill AQ,Cornea RL,Fessenden JD,Van Petegem F

    更新日期:2015-08-06 00:00:00

  • Resolving Dirac electrons with broadband high-resolution NMR.

    abstract::Detecting the metallic Dirac electronic states on the surface of Topological Insulators (TIs) is critical for the study of important surface quantum properties (SQPs), such as Majorana zero modes, where simultaneous probing of the bulk and edge electron states is required. However, there is a particular shortage of ex...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14838-4

    authors: Papawassiliou W,Jaworski A,Pell AJ,Jang JH,Kim Y,Lee SC,Kim HJ,Alwahedi Y,Alhassan S,Subrati A,Fardis M,Karagianni M,Panopoulos N,Dolinšek J,Papavassiliou G

    更新日期:2020-03-09 00:00:00

  • Evidence for a chemical clock in oscillatory formation of UiO-66.

    abstract::Chemical clocks are often used as exciting classroom experiments, where an induction time is followed by rapidly changing colours that expose oscillating concentration patterns. This type of reaction belongs to a class of nonlinear chemical kinetics also linked to chaos, wave propagation and Turing patterns. Despite i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11832

    authors: Goesten MG,de Lange MF,Olivos-Suarez AI,Bavykina AV,Serra-Crespo P,Krywka C,Bickelhaupt FM,Kapteijn F,Gascon J

    更新日期:2016-06-10 00:00:00

  • Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum.

    abstract::The Dead Sea is one of the most hypersaline habitats on Earth. The fungus Eurotium rubrum (Eurotiomycetes) is among the few species able to survive there. Here we highlight its adaptive strategies, based on genome analysis and transcriptome profiling. The 26.2 Mb genome of E. rubrum shows, for example, gains in gene f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4745

    authors: Kis-Papo T,Weig AR,Riley R,Peršoh D,Salamov A,Sun H,Lipzen A,Wasser SP,Rambold G,Grigoriev IV,Nevo E

    更新日期:2014-05-09 00:00:00

  • The function of zebra stripes.

    abstract::Despite over a century of interest, the function of zebra stripes has never been examined systematically. Here we match variation in striping of equid species and subspecies to geographic range overlap of environmental variables in multifactor models controlling for phylogeny to simultaneously test the five major expl...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4535

    authors: Caro T,Izzo A,Reiner RC Jr,Walker H,Stankowich T

    更新日期:2014-04-01 00:00:00

  • Photoreduction of gaseous oxidized mercury changes global atmospheric mercury speciation, transport and deposition.

    abstract::Anthropogenic mercury (Hg(0)) emissions oxidize to gaseous Hg(II) compounds, before deposition to Earth surface ecosystems. Atmospheric reduction of Hg(II) competes with deposition, thereby modifying the magnitude and pattern of Hg deposition. Global Hg models have postulated that Hg(II) reduction in the atmosphere oc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07075-3

    authors: Saiz-Lopez A,Sitkiewicz SP,Roca-Sanjuán D,Oliva-Enrich JM,Dávalos JZ,Notario R,Jiskra M,Xu Y,Wang F,Thackray CP,Sunderland EM,Jacob DJ,Travnikov O,Cuevas CA,Acuña AU,Rivero D,Plane JMC,Kinnison DE,Sonke JE

    更新日期:2018-11-15 00:00:00

  • SPA70 is a potent antagonist of human pregnane X receptor.

    abstract::Many drugs bind to and activate human pregnane X receptor (hPXR) to upregulate drug-metabolizing enzymes, resulting in decreased drug efficacy and increased resistance. This suggests that hPXR antagonists have therapeutic value. Here we report that SPA70 is a potent and selective hPXR antagonist. SPA70 inhibits hPXR i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00780-5

    authors: Lin W,Wang YM,Chai SC,Lv L,Zheng J,Wu J,Zhang Q,Wang YD,Griffin PR,Chen T

    更新日期:2017-09-29 00:00:00

  • Mutation bias and GC content shape antimutator invasions.

    abstract::Mutators represent a successful strategy in rapidly adapting asexual populations, but theory predicts their eventual extinction due to their unsustainably large deleterious load. While antimutator invasions have been documented experimentally, important discrepancies among studies remain currently unexplained. Here we...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11217-6

    authors: Couce A,Tenaillon O

    更新日期:2019-07-15 00:00:00

  • Macrophages are exploited from an innate wound healing response to facilitate cancer metastasis.

    abstract::Tumour-associated macrophages (TAMs) play an important role in tumour progression, which is facilitated by their ability to respond to environmental cues. Here we report, using murine models of breast cancer, that TAMs expressing fibroblast activation protein alpha (FAP) and haem oxygenase-1 (HO-1), which are also fou...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05346-7

    authors: Muliaditan T,Caron J,Okesola M,Opzoomer JW,Kosti P,Georgouli M,Gordon P,Lall S,Kuzeva DM,Pedro L,Shields JD,Gillett CE,Diebold SS,Sanz-Moreno V,Ng T,Hoste E,Arnold JN

    更新日期:2018-07-27 00:00:00

  • Frustrated supercritical collapse in tunable charge arrays on graphene.

    abstract::The photon-like behavior of electrons in graphene causes unusual confinement properties that depend strongly on the geometry and strength of the surrounding potential. We report bottom-up synthesis of atomically-precise one-dimensional (1D) arrays of point charges on graphene that allow exploration of a new type of su...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08371-2

    authors: Lu J,Tsai HZ,Tatan AN,Wickenburg S,Omrani AA,Wong D,Riss A,Piatti E,Watanabe K,Taniguchi T,Zettl A,Pereira VM,Crommie MF

    更新日期:2019-01-29 00:00:00

  • Near-field examination of perovskite-based superlenses and superlens-enhanced probe-object coupling.

    abstract::A planar slab of negative-index material works as a superlens with sub-diffraction-limited resolution, as propagating waves are focused and, moreover, evanescent waves are reconstructed in the image plane. Here we demonstrate a superlens for electric evanescent fields with low losses using perovskites in the mid-infra...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1249

    authors: Kehr SC,Liu YM,Martin LW,Yu P,Gajek M,Yang SY,Yang CH,Wenzel MT,Jacob R,von Ribbeck HG,Helm M,Zhang X,Eng LM,Ramesh R

    更新日期:2011-01-01 00:00:00

  • EPR-aided approach for solution structure determination of large RNAs or protein-RNA complexes.

    abstract::High-resolution structural information on RNA and its functionally important complexes with proteins is dramatically underrepresented compared with proteins but is urgently needed for understanding cellular processes at the molecular and atomic level. Here we present an EPR-based protocol to help solving large RNA and...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4669

    authors: Duss O,Yulikov M,Jeschke G,Allain FH

    更新日期:2014-05-14 00:00:00

  • A multi-marker association method for genome-wide association studies without the need for population structure correction.

    abstract::All common genome-wide association (GWA) methods rely on population structure correction, to avoid false genotype-to-phenotype associations. However, population structure correction is a stringent penalization, which also impedes identification of real associations. Using recent statistical advances, we developed a ne...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13299

    authors: Klasen JR,Barbez E,Meier L,Meinshausen N,Bühlmann P,Koornneef M,Busch W,Schneeberger K

    更新日期:2016-11-10 00:00:00

  • Bipartite electronic superstructures in the vortex core of Bi2Sr2CaCu2O8+δ.

    abstract::The central issue in the physics of cuprate superconductivity is the mutual relationship among superconductivity, pseudogap and broken-spatial-symmetry states. A magnetic field B suppresses superconductivity, providing an opportunity to investigate the competition among these states. Although various B-induced electro...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11747

    authors: Machida T,Kohsaka Y,Matsuoka K,Iwaya K,Hanaguri T,Tamegai T

    更新日期:2016-05-27 00:00:00

  • The reach of gene-culture coevolution in animals.

    abstract::Culture (behaviour based on socially transmitted information) is present in diverse animal species, yet how it interacts with genetic evolution remains largely unexplored. Here, we review the evidence for gene-culture coevolution in animals, especially birds, cetaceans and primates. We describe how culture can relax o...

    journal_title:Nature communications

    pub_type: 杂志文章,评审

    doi:10.1038/s41467-019-10293-y

    authors: Whitehead H,Laland KN,Rendell L,Thorogood R,Whiten A

    更新日期:2019-06-03 00:00:00

  • Heterovalent cation substitutional doping for quantum dot homojunction solar cells.

    abstract::Colloidal quantum dots have emerged as a material platform for low-cost high-performance optoelectronics. At the heart of optoelectronic devices lies the formation of a junction, which requires the intimate contact of n-type and p-type semiconductors. Doping in bulk semiconductors has been largely deployed for many de...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3981

    authors: Stavrinadis A,Rath AK,de Arquer FP,Diedenhofen SL,Magén C,Martinez L,So D,Konstantatos G

    更新日期:2013-01-01 00:00:00

  • Fossil black smoker yields oxygen isotopic composition of Neoproterozoic seawater.

    abstract::The evolution of the seawater oxygen isotopic composition (δ18O) through geological time remains controversial. Yet, the past δ18Oseawater is key to assess past seawater temperatures, providing insights into past climate change and life evolution. Here we provide a new and unprecedentedly precise δ18O value of -1.33 ±...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03890-w

    authors: Hodel F,Macouin M,Trindade RIF,Triantafyllou A,Ganne J,Chavagnac V,Berger J,Rospabé M,Destrigneville C,Carlut J,Ennih N,Agrinier P

    更新日期:2018-04-13 00:00:00

  • Author Correction: Directed self-assembly of herbal small molecules into sustained release hydrogels for treating neural inflammation.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-020-17712-5

    authors: Zheng J,Fan R,Wu H,Yao H,Yan Y,Liu J,Ran L,Sun Z,Yi L,Dang L,Gan P,Zheng P,Yang T,Zhang Y,Tang T,Wang Y

    更新日期:2020-07-27 00:00:00