Different unfolding pathways of homologous alpha amylases from Bacillus licheniformis (BLA) and Bacillus amyloliquefaciens (BAA) in GdmCl and urea.

Abstract:

:Understanding the factors governing stability of proteins is fundamentally and industrially important topic in protein science. Bacterial alpha amylases are industrially important enzymes which are involved in the breakage of α-1, 4-glycosidic bonds in starch. Current study is focussed on elucidating the role of non-covalent interactions in the differential stability of alpha amylases from thermophilic like Bacillus licheniformis (BLA) and mesophilic Bacillus amyloliquefaciens (BAA). The conformational stability of BLA is slightly higher than BAA in GdmCl which are 2.94 and 2.53 kcal/mol respectively. BLA does not unfold even in 8.0 M urea at pH 7.0, while for BAA, the conformational stability in urea is calculated to be 2.22 kcal/mol. A structure-function relationship study of BLA reveals the non-coincidental unfolding by far UV-CD, enzyme activity and tryptophan fluorescence which indicates the presence of partially unfolded intermediates. The existence of intermediates in BLA during GdmCl induced unfolding was further confirmed by ANS fluorescence. The unfolding kinetics of both enzymes showed biphasic nature with slower unfolding of BLA compare to BAA pointing towards the higher kinetic stability of BLA than BAA. Taken together, our work demonstrates that the higher stability of BLA is mainly due to the combination of ionic and hydrophobic interactions.

journal_name

Int J Biol Macromol

authors

Ahmad A,Mishra R

doi

10.1016/j.ijbiomac.2020.05.139

subject

Has Abstract

pub_date

2020-09-15 00:00:00

pages

667-674

eissn

0141-8130

issn

1879-0003

pii

S0141-8130(20)33290-6

journal_volume

159

pub_type

杂志文章
  • Designing a direct ELISA kit for the detection of Staphylococcus aureus enterotoxin A in raw milk samples.

    abstract::Under favorable growth conditions, Staphylococcus aureus infects and causes illnesses in humans and animals. Staphylococcal enterotoxins are considered the most important factor for food poisoning, with these toxins usually found in milk and its byproducts. This study investigated the presence of a classical enterotox...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.10.052

    authors: Nouri A,Ahari H,Shahbazzadeh D

    更新日期:2018-02-01 00:00:00

  • The biomedical potential of cellulose acetate/polyurethane nanofibrous mats containing reduced graphene oxide/silver nanocomposites and curcumin: Antimicrobial performance and cutaneous wound healing.

    abstract::In this study, nanofibrous scaffolds were prepared from polyurethane and cellulose acetate using electrospinning. Reduced graphene oxide/silver nanocomposites, rGO/Ag, were also used into the mats due to the strong antibacterial activity of rGO/Ag nanocomposites. In order to prevent the agglomeration of silver nanopar...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.02.295

    authors: Esmaeili E,Eslami-Arshaghi T,Hosseinzadeh S,Elahirad E,Jamalpoor Z,Hatamie S,Soleimani M

    更新日期:2020-06-01 00:00:00

  • Sulfated polysaccharide from the green marine algae Caulerpa racemosa reduces experimental pain in the rat temporomandibular joint.

    abstract::Temporomandibular disorder is a clinical painful condition in the temporomandibular joint (TMJ) region. The purified sulfated polysaccharide from the green marine algae Caulerpa racemosa (Cr) has provided anti-inflammatory and antinociceptive activity. This study evaluated these effects on a TMJ hypernociception model...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.01.272

    authors: Ribeiro NA,Chaves HV,da Conceição Rivanor RL,do Val DR,de Assis EL,Silveira FD,Gomes FIF,Freitas HC,Vieira LV,da Silva Costa DV,de Castro Brito GA,Bezerra MM,Benevides NMB

    更新日期:2020-05-01 00:00:00

  • pH-sensitive sodium alginate/poly(vinyl alcohol) hydrogel beads prepared by combined Ca2+ crosslinking and freeze-thawing cycles for controlled release of diclofenac sodium.

    abstract::In order to enhance the drug entrapment efficiency and improve the swelling behaviors of drug delivery system, Ca2+ crosslinking and freeze-thawing (FT) cycle techniques were used to prepare sodium alginate/poly(vinyl alcohol) (SA/PVA) hydrogel beads. The mixture solution of SA and PVA was firstly crosslinked with Ca2...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2010.03.004

    authors: Hua S,Ma H,Li X,Yang H,Wang A

    更新日期:2010-06-01 00:00:00

  • Digestion kinetics of native and modified cardaba banana starch: A biphasic approach.

    abstract::To understand the mechanism through which cardaba banana starch is hydrolysed, the starch digestion kinetics of native and modified cardaba banana starch samples of Nigeria origin were investigated using an in vitro procedure. The digestion kinetics of the starch samples revealed the samples exhibited a biphasic diges...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.03.089

    authors: Olawoye B,Gbadamosi SO

    更新日期:2020-07-01 00:00:00

  • Enhanced antibacterial activity of PEO-chitosan nanofibers with potential application in burn infection management.

    abstract::Chitosan (CS) is a well-known biological macromolecule having numerous applications due to its exceptional properties especially in the form of nanofibers. The antibacterial activity is compromised when co-polymers are added to electrospun CS but, the reproducibility can be enhanced which is key to commercialization. ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.06.022

    authors: Abid S,Hussain T,Nazir A,Zahir A,Ramakrishna S,Hameed M,Khenoussi N

    更新日期:2019-08-15 00:00:00

  • Natural killer cell-mediated anticancer effects of an arabinogalactan derived from rice hull in CT26 colon cancer-bearing mice.

    abstract::Rice hull polysaccharides (RHPS) have been reported to activate innate immunity in mice. This study investigated the effects of RHPS on natural killer (NK) cell-mediated cytotoxicity in vitro and the possible underlying anticancer mechanisms in vivo. The results showed that sustained exposure to RHPS increased NK-92MI...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.11.200

    authors: Yang LC,Lai CY,Hsieh CC,Lin WC

    更新日期:2019-03-01 00:00:00

  • Immunopotentiation of Polysaccharides of Atractylodes macrocephala Koidz-loaded nanostructured lipid carriers as an adjuvant.

    abstract::The immunoregulation and immunopotentiation of Polysaccharides of Atractylodes macrocephala Koidz (PAMK) have been widely demonstrated. Nanostructured lipid carriers (NLC) have high drug loading capacity for lipophilic and hydrophilic drugs, and have good biocompatibility and high bioavailability. In this study, the e...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.08.108

    authors: Liu Z,Sun Y,Zhang J,Ou N,Gu P,Hu Y,Liu J,Wu Y,Wang D

    更新日期:2018-12-01 00:00:00

  • Characterization by mass spectrometry of poly(3-hydroxyalkanoates) produced by Rhodospirillum rubrum from 3-hydroxyacids.

    abstract::The sequence distributions of two microbial copolyesters obtained by fermentation of Rhodospirillum rubrum, grown with 3-hydroxyhexanoic or 3-hydroxyheptanoic acids, were determined by analyzing the oligomers prepared by partial pyrolysis or partial methanolysis of these copolyesters using fast atom bombardment mass s...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/s0141-8130(99)00085-9

    authors: Ballistreri A,Giuffrida M,Impallomeni G,Lenz RW,Fuller RC

    更新日期:1999-11-01 00:00:00

  • pH-responsive poly(gellan gum-co-acrylamide-co-acrylic acid) hydrogel: Synthesis, and its application for organic dye removal.

    abstract::A poly(gellan gum-co-acrylamide-co-acrylic acid) (GGDA) hydrogel was synthesized by modifying gellan gum (GG) with partly neutralized acrylic acid (AAc) and acrylamide (AAm) under the crosslinking agent trimethylolpropane triglycidyl ether. With the introduction of carboxyl and amino groups by the AAc and AAm, the GGD...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.03.024

    authors: Zheng M,Cai K,Chen M,Zhu Y,Zhang L,Zheng B

    更新日期:2020-06-15 00:00:00

  • Synergistic role of three dimensional niche and hypoxia on conservation of cancer stem cell phenotype.

    abstract::Hypoxia is a pathalogical condition in which tissues are deprived of adequate oxygen supply. The hypoxia effect on tumors has a critically important role on maintenance of cancer stem cell phenotype. The aim of this study is to investigate the effects of hypoxia on cancer stem cells on three dimensional (3D) in vitro ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2015.12.053

    authors: Gorgun C,Ozturk S,Gokalp S,Vatansever S,Gurhan SI,Urkmez AS

    更新日期:2016-09-01 00:00:00

  • Models in which many cross-bridges attach simultaneously can explain the filament movement per ATP split during muscle contraction.

    abstract::Contractile filaments in skeletal muscle are moved by less than 2nm for each ATP used. If just one cross-bridge is attached to each thin filament at any instant then this distance represents the fundamental myosin cross-bridge step size (i.e. the distance one cross-bridge moves a thin filament in one ATP-splitting cyc...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/s0141-8130(03)00047-3

    authors: Barclay CJ

    更新日期:2003-09-01 00:00:00

  • Multi-analysis of chemical transformations of lignin macromolecules from waterlogged archaeological wood.

    abstract::A large number of archaeological wooden building poles have been excavated from the Hai Menkou site (Yunnan province, China). Lignin can be transformed and altered accompanied with significant loss of carbohydrates during this process. Elucidation of chemical and structural transformations of lignin is of primary impo...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.12.114

    authors: Xia Y,Chen TY,Wen JL,Zhao YL,Qiu J,Sun RC

    更新日期:2018-04-01 00:00:00

  • Ag NPs on chitosan-alginate coated magnetite for synthesis of indazolo[2,1-b]phthalazines and human lung protective effects against α-Guttiferin.

    abstract::Biocomposite nanomaterials have been evolved as the new generation catalysts and therapeutic supplement in these days. Magnetically isolation has added new features to this category. This has encouraged us to synthesize a novel Ag NP adorned chitosan-alginate dual bio-polysaccharide (two of the more versatile polysacc...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.08.183

    authors: Han Y,Gao Y,Cao X,Zangeneh MM,Liu S,Li J

    更新日期:2020-12-01 00:00:00

  • Effect of microbial exopolysaccharide on wheat bran sourdough: Rheological, thermal and microstructural characteristics.

    abstract::Rheological, thermal and microstructural properties of wheat bran sourdough (WBS) containing different levels of microbial exopolysaccharide (EPS) extracted from Lactobacillus plantarum were investigated. All sourdough samples showed pseudoplastic behavior and the highest apparent viscosity was achieved at 1.5% EPS. T...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2020.03.149

    authors: Abedfar A,Hosseininezhad M,Rafe A

    更新日期:2020-07-01 00:00:00

  • Molecular weight and antitumour activity of Zymomonas mobilis levans.

    abstract::Levans produced by several Zymomonas mobilis strains were classified by their viscosity average molecular weight and tested against sarcoma 180. Measurements of the samples' polydispersity were carried out to characterise the molecular weight distribution. The antitumour activities of levan samples were plotted agains...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/s0141-8130(00)00125-2

    authors: Calazans GMT,Lima RC,de França FP,Lopes CE

    更新日期:2000-07-12 00:00:00

  • Stabilizing enzymes by immobilization on bacterial spores: A review of literature.

    abstract::The ever-increasing applications of enzymes are limited by the relatively poor performance in harsh processing conditions. As a result, there are constant innovations in immobilization protocols for improving biocatalyst activity and stability. Bacterial spores are cheap to generate and highly resistant to environment...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijbiomac.2020.10.171

    authors: Ugwuodo CJ,Nwagu TN

    更新日期:2021-01-01 00:00:00

  • Purification and characterization of thermostable superoxide dismutase from Anoxybacillus gonensis KA 55 MTCC 12684.

    abstract::A thermostable superoxide dismutase from thermophilic bacterium Anoxybacillus gonensis KA 55 MTCC 12684 which was isolated from Manikaran hotspring of Himachal Pradesh was purified to apparent homogeneity by fractional ammonium sulphate precipitation and anion exchange chromatography. A purification factor of 33.1-fol...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.06.031

    authors: Bhatia K,Mal G,Bhar R,Jyoti,Attri C,Seth A

    更新日期:2018-10-01 00:00:00

  • On the relationship between the conserved 'black' and 'gray' structural clusters and intrinsic disorder in parvalbumins.

    abstract::Recently we found two highly conserved structural motifs in the members of the EF-hand protein family, which provide a supporting scaffold for their Ca2+ binding loops. Each structural motif is formed by a cluster of three amino acids. These clusters were called 'black' cluster (cluster I) and 'gray' cluster (cluster ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.08.183

    authors: Deryusheva EI,Denesyuk AI,Denessiouk K,Uversky VN,Permyakov SE,Permyakov EA

    更新日期:2018-12-01 00:00:00

  • Exopolysaccharides production by Lactobacillus acidophilus LA5 and Bifidobacterium animalis subsp. lactis BB12: Optimization of fermentation variables and characterization of structure and bioactivities.

    abstract::In this study, the most important variables (incubation temperature, fermentation time and yeast extract concentration) responsible for the exopolysaccharides (EPSs) production by Lactobacillus acidophilus LA5 and Bifidobacterium animalis subsp. lactis BB12 were screened. The EPSs synthesize by LA5, BB12, and their co...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.11.084

    authors: Amiri S,Rezaei Mokarram R,Sowti Khiabani M,Rezazadeh Bari M,Alizadeh Khaledabad M

    更新日期:2019-02-15 00:00:00

  • Effects of growth condition on the structure of glycogen produced in cyanobacterium Synechocystis sp. PCC6803.

    abstract::Growth and glycogen production were characterized for Synechocystis sp. strain PCC6803 grown under continuous fluorescent light in four variations of BG-11 medium: either with (G+) or without (G-) 5mM glucose, and with a normal (N+, 1.5 g sodium nitrate/L) or a reduced (N-, 0.084 g sodium nitrate/L) nitrogen concentra...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2006.11.009

    authors: Yoo SH,Keppel C,Spalding M,Jane JL

    更新日期:2007-04-10 00:00:00

  • A novel GH16 beta-agarase isolated from a marine bacterium, Microbulbifer sp. BN3 and its characterization and high-level expression in Pichia pastoris.

    abstract::An agar-degrading bacterium, strain BN3, was isolated from a coastal soil sample collected in Taiwan Strait, China and identified to be a novel species of the genus Microbulbifer. The gene (N3-1) encoding for a novel β-agarase from the isolate was cloned and sequenced. It encoded a mature protein with 274 amino acids ...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2018.08.053

    authors: Li RK,Chen Z,Ying XJ,Ng TB,Ye XY

    更新日期:2018-11-01 00:00:00

  • Activation effect of Ganoderma lucidum polysaccharides liposomes on murine peritoneal macrophages.

    abstract::The activation of murine peritoneal macrophages by Ganoderma lucidum polysaccharides liposomes (GLPL) was investigated in vitro. After treatment with GLPL, the changes of the nitric oxide (NO) secretion and iNOS (inducible nitric oxide synthase) activity were evaluated. The results showed that NO production and iNOS a...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2015.10.088

    authors: Liu Z,Xing J,Huang Y,Bo R,Zheng S,Luo L,Niu Y,Zhang Y,Hu Y,Liu J,Wu Y,Wang D

    更新日期:2016-01-01 00:00:00

  • Helicoverpa-inducible Thioredoxin h from Cicer arietinum: structural modeling and potential targets.

    abstract::Thioredoxins are small and universal proteins, which are involved in the cell redox regulation. In plants, they participate in a broad range of biochemical processes like self-incompatibility, seed germination, pathogen & pest defense and oxidative stress tolerance. The h-type of thioredoxin (Trx-h) protein represents...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2017.12.079

    authors: Singh A,Tyagi C,Nath O,Singh IK

    更新日期:2018-04-01 00:00:00

  • Amylopectin-g-poly(methylacrylate-co-sodium acrylate): An efficient Cd(II) binder.

    abstract::Synthesis, characterization and Cd(II) adsorption studies of a novel biodegradable graft copolymer based on partially hydrolysed polymethylacrylate (PMA) grafted amylopectin was reported, which was prepared by first grafting of PMA chains onto the amylopectin backbone followed by partial alkaline hydrolysis. The hydro...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2016.06.022

    authors: Sasmal D,Kolya H,Tripathy T

    更新日期:2016-10-01 00:00:00

  • Common buckwheat-resistant starch as a suitable raw material for food production: A structural and physicochemical investigation.

    abstract::Heat-moisture treatment (HMT) of starch is defined as a physical method to change its properties. Compared with maize and potato, starches from common buckwheat (Xinong9976 and Pingqiao2) were isolated and its morphology and physicochemical properties investigated by scanning electron microscope (SEM), X-ray diffracti...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.12.116

    authors: Gao L,Xia M,Li Z,Wang M,Wang P,Yang P,Gao X,Gao J

    更新日期:2020-02-15 00:00:00

  • Preparation and properties of granular cold-water-soluble porous starch.

    abstract::In this work, granular cold-water soluble waxy corn starch (N-GCWS) and granular cold-water soluble porous waxy corn starch (P-GCWS) were prepared by waxy corn starch (WS) treated with alcohol-alkali. Starch morphologies, crystal structures, turbidity, cold water viscosity, freeze-thaw stability and oil absorption cap...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2019.12.060

    authors: Chen Y,Dai G,Gao Q

    更新日期:2020-02-01 00:00:00

  • Applications of chitosan and chitosan based metallic nanoparticles in agrosciences-A review.

    abstract::The second most abundant biological macromolecule, next to cellulose is Chitosan. It is a versatile naturally occurring hydrophilic polysaccharide, derived as a deacetylated form of chitin. Due to its biocompatibility, biodegradability and antimicrobial activity, it has become a significant area of research towards dr...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijbiomac.2020.11.035

    authors: Chouhan D,Mandal P

    更新日期:2021-01-01 00:00:00

  • Electrospun chitosan-graft-poly (ε -caprolactone)/poly (ε-caprolactone) cationic nanofibrous mats as potential scaffolds for skin tissue engineering.

    abstract::This research is aimed to develop cationic nanofibrous mats with improved cellular adhesion profiles and stability of three-dimensional fibrous structure as potential scaffolds for skin tissue engineering. Firstly, amino-remained chitosan-graft-poly (ɛ-caprolactone) (CS-g-PCL) was synthesized with a facile one-step ma...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章

    doi:10.1016/j.ijbiomac.2010.09.019

    authors: Chen H,Huang J,Yu J,Liu S,Gu P

    更新日期:2011-01-01 00:00:00

  • Carboxymethyl cellulose-based oral delivery systems.

    abstract::For administration of therapeutic agents, the oral route is favored since it is comfortable to patients and also requires a reduced cost. Recently, a considerable amount of work has been reported on carboxymethyl cellulose as oral delivery systems. In contrast to all other polysaccharides having a profile in a pharmac...

    journal_title:International journal of biological macromolecules

    pub_type: 杂志文章,评审

    doi:10.1016/j.ijbiomac.2019.04.079

    authors: Javanbakht S,Shaabani A

    更新日期:2019-07-15 00:00:00