Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics.

Abstract:

:Our knowledge of transcriptional heterogeneities in epithelial stem and progenitor cell compartments is limited. Epidermal basal cells sustain cutaneous tissue maintenance and drive wound healing. Previous studies have probed basal cell heterogeneity in stem and progenitor potential, but a comprehensive dissection of basal cell dynamics during differentiation is lacking. Using single-cell RNA sequencing coupled with RNAScope and fluorescence lifetime imaging, we identify three non-proliferative and one proliferative basal cell state in homeostatic skin that differ in metabolic preference and become spatially partitioned during wound re-epithelialization. Pseudotemporal trajectory and RNA velocity analyses predict a quasi-linear differentiation hierarchy where basal cells progress from Col17a1Hi/Trp63Hi state to early-response state, proliferate at the juncture of these two states, or become growth arrested before differentiating into spinous cells. Wound healing induces plasticity manifested by dynamic basal-spinous interconversions at multiple basal transcriptional states. Our study provides a systematic view of epidermal cellular dynamics, supporting a revised "hierarchical-lineage" model of homeostasis.

journal_name

Cell Rep

journal_title

Cell reports

authors

Haensel D,Jin S,Sun P,Cinco R,Dragan M,Nguyen Q,Cang Z,Gong Y,Vu R,MacLean AL,Kessenbrock K,Gratton E,Nie Q,Dai X

doi

10.1016/j.celrep.2020.02.091

subject

Has Abstract

pub_date

2020-03-17 00:00:00

pages

3932-3947.e6

issue

11

issn

2211-1247

pii

S2211-1247(20)30265-5

journal_volume

30

pub_type

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